Polyodon spathula (Mississippi paddlefish): 121307808
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Entry
121307808 CDS
T07273
Name
(RefSeq) polycystic kidney disease protein 1-like 1
KO
K04987
polycystin 1L1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
pspa03037
]
121307808
04040 Ion channels [BR:
pspa04040
]
121307808
Cilium and associated proteins [BR:
pspa03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
121307808
Ion channels [BR:
pspa04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
121307808
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
REJ
PKD
Polycystin_dom
PKD_4
PLAT
PKD_channel
GPS
Motif
Other DBs
NCBI-GeneID:
121307808
NCBI-ProteinID:
XP_041096027
LinkDB
All DBs
Position
3:15525617..15572361
Genome browser
AA seq
3242 aa
AA seq
DB search
MEVSAPAQLSISVSVENEVSQLSANFTTTVQYPILQVALTVARAALGQPSNVAVTVTPAQ
DYSIYLDLGDGENLLSSSLEQPPELHCSSVPLCSSTFQFQHVYSAIGVYNLSASVANSVS
SATQTADVVVEEPIAGIQLVLMTPSVIRIRDFINATVSVQSGSEITFEWLVSFPYPGSYN
PTDCNTHVSSMSFQPEIPGVYLVSVRISSPLYSTPFIKGLPSPVKVRSPINNIHATFPFD
MSYTKMYPQPDGTYATQVLGFSVHTFSEDVSFLYDFGDGSPVSYVQGSPGFFFGVAASCL
HQFTREGTYIITVTAYNEFYNATDVLGPYYVEMLPEGLIVTVNSSVIHKNEVIFFNASLT
RGTHVTYTWNMGDQTTYVNQGPVVHHQFLTAGVYTVIVNARNRVGSILTNTSVSVLYRMQ
PVQIYTDKPIYAADTDITFEAVTSETGLLEFVWYFGDKPPVRTTSKSITTRYYTADRYNV
IVNASNRLSSFTSDIYPITIQKKVEANRLLSDASVLVNASVAFDCRINSGTNVTYQWTFG
DGTYKIGRSTEYHVFHSMGEFTVKVTVSNLVSSVSLTRQIFVVYEPCQPPPVKNMGPLKV
QVRRHQDLNLRVTFEADIKCNISQGLLYSWTFFDSNYIPVKLPLIDTNMQIIYIPNNFLE
YGRYTAIARVQIKGNVVYSNYTVPIEVIPTPPICVIDGGNNIFISSRNNSLITLNGEGSF
DPDYPESILSFAWNCVPVSGIDSSCFDYNVSTTASTFTIPAFILKSRFDQFRFTLTVQSG
DRFSTAEVFVTIQESLLKTINVFCYQCIGNTVNWNEPFSVEAKCETCENISDLSFVWNLY
LVNASNEDSTEVPFCKSLNVGGSSSLFVDPSYGGSDQATQALPITVPPSTYPATSSNAFS
VTIAPPASMSPNPANDSGTLTTTATNSKNATINPAALTPNNTALFSNNSTNTSVHQSITG
TTTVEQPPPASKEDPPFPPFLFPVEGPASGGRTRRRRSASKTITSDIPVPKDAGSLKSRS
PSSKKGATEGPLVQSGVVGGLRGDGVLSEGSSGSSEGTTFNLIPTPGPPVSVNISVSSGT
VVGGGESSSAANQTFGSNNTELTDFDTHYNGIQEGGLASGSSSGGRPAGSDSGISEGGGT
ASGGTASGGTTGGGSSSDDGSNLVDNSNSLVVLSPVTLLDLNRGKIDNRIFETYTSSGIS
SYFVTFKPFILQPKMLYMLEVSAKSTHQILGKSQLFFSINEVPKGMTCQVQPIRGYEVST
DFSIFCTSGKEDLLYQYSFSIGNSSRKLLYEGRDVQYYFNLPAGDPSDGYKVTIYTEISN
RFGARTKPCPVSVTVLPSFQRNLSSSYNPDEELYIDGLKNLSRLLLMGSDLEIRNYVILL
TNVLNRLSLEPGATVELQTRTRSALIASVCGLHLTHQGALIDKLYMLNDLMGVKEQITFS
SAKLVTGHVNELSQRFQEPFTPDSFFLDEWTVRLLVSLLSKSIEVPDNTTEDGIAFIADG
IRTTRELLLKYVVFINHTQFNVNTSLMELQTTQHYSFQNAVQRAGTTRFYLPDILNKHIT
AQTGRNSTCYISQLVSFKQNLYFWGTAPVKINGDVADLSLYNCITRRKINIKGLTEPVNV
EFEKTYKNVSCFSKFSLFRNKMNIHNFEVTSENLIEALQITLDFNRPAEKVFPIMLLLRM
LEKPTPSIYNIQQIHSWESNRAQIVLPAGSLKDTGSCYLALLNADYNRTDRNKYIASAVN
YTMTIQWTQCLYWDDIKQWKSDGCSPVQGLSSNKVNCSCNHLTTFTMANRQISSNYDFTD
VAQFISLINNLVPCIVIVFILLIYILLVIACKQADLYSEKKSGSVLLQDNSPSDQQLYSI
IIDTGFRSRAGTTAKVHIVLHGEDGVSETRELDCPDKPLFSRNSRHTFILSTPDSLGPLW
KVHLWHNNGGQSPSWYVSHVIVKDLVTGMSWFFPAECWLAVDKGDGKVERELTCLSHGPG
LKKLLYCKLTEYLEDFHFWASVYSRPSHSQFSHTQRLTVCLILLLGYMLLNTVLIYMKDD
EFTAELGLIDVSAISLVTGFFSTLAALPVGVLLSLLFRFSKVTVKKDPSAEQNTSSKASD
IYSVEVHRDALLSEDSTLESYMSWQNLQRWAQETWRKKHERGLESRSSIVVFEQDSESNN
KKEGPCSSDCSSSGFEDCSSQENGKVPPKNFEHSSSDLRSGSSLDRSLYEHHQVFGSSTI
VLPFWCHYLAWTVCLLLAIVCIVVTVLLGLKFSGTKSLLWIHSLFFSLLFCIFVVQPLVI
FIIAAVVSLKYKERSDFYTGCLETGPVLEAVKPCLNGGSENYRHSVHQEQRTDFDRIIAA
RQRARYLRLARPPTPAQLKEARDRIRKEGLIQHTLREFVLYIVMLLLLMFVTYGKFSSDQ
YLLNQAVRTEFTKNPKKLLSEVKTAEDWWSWSLTALLEGLYWDTWYNNASASAKAGPLKG
TCSLIGEPVLQKIQVINNTGCTIPSMFAGLITDCVPPYRPEVHDPGSKETSDSQTDTVRV
NLCGQIECYDGKGTTVKLGRTKSEAYRTLLQLSADRWLDRSTRAVVVKFTLYNPPSNLFT
TVSLLAETPPTGGVIPSAYIESVRIYDVSSILDYVIMAFELIFLALILLHLYFQVCAMLQ
KGLLVYWQEPWNWLEVAIIIISLFYYTYYMYHFVLAVEVIDYLQRGNFKAFVDLSLISSW
DQLTRCLHGVIIFLLLLKCLRLLWINKVISPCVTMLRLSCSSITLPVVAGIIFMIAYSCL
GNLLFLSTSHPFGTVVRSFQTVLMHFVGVSKLQTLSSMYKTNQLSIAIYYGTFFFIMSVL
WIGMIAGVLTSLAQDSKKSSRSKHLVTLTEVMVYARERLLAFIGRKRHQSPDSPTTGGSN
FYLDEFENLMDELLFRLNAFSNSLHRSLPAKQRNYLGDESPLISQSDYYYCPGSESASVN
EDSVGKKVYKIEQKLFKNNPEIYNLLMSTKENDLASQRPLRSQLETETFRHLHLKNHGSP
SATSVDNSENCKPSHTHSQDREDYLSDSTKPSVTLPGSTNPSSESCASMSDSCSLPEQCS
SCQTGCAVNPDHYNLAKLGDDLPHVLCGTKCPEKLAAQSIESRTSHQQRSTSASVSSKSR
KPLKRSHTIIIKPLESPIEVTESRAGSNDEVGYASEEKTSVSAKDSVDQPTKLSSPERSS
QHSNAKGQRSGPKVQEGAKMKKDKQKKKPKKADHHFLIAEDAQDSNLQNELTVLPESLRQ
CW
NT seq
9729 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgagtgcaccagcacaactaagcatcagtgtttcagtggagaacgaagtcagt
cagctttctgccaactttaccacaacggtccaatatccaattcttcaagttgccttaact
gtagcccgggctgctcttgggcagccaagcaatgtggctgtaacagtgactccagcccag
gactactctatttacttggatttgggtgatggggagaatctactttcatcctctcttgaa
cagccaccggagctccactgctcctcagtacctctgtgttcttcaacattccaattccaa
catgtgtactctgccattggagtttataacctgtctgccagtgtggctaattctgtcagc
tctgccacacagacagcagacgttgtggtggaagagcctattgctggtatccagctagtc
ctgatgactccaagtgtgatcagaattagagacttcattaacgccacagtctctgtgcag
tctggcagcgagattacatttgaatggcttgtttcctttccttaccctggaagttacaat
ccaactgattgcaatacccatgttagttctatgagcttccagcctgagatccctggagtc
tacctcgtgtctgtgaggatttccagtcctctgtacagcacccctttcattaagggactt
ccaagtccagttaaagttcgcagtccaatcaataacatccatgctacgtttccatttgac
atgagctacacaaaaatgtatccccagccagatgggacatatgccactcaggtcttaggc
ttcagtgttcacactttctctgaagacgtcagttttctgtatgattttggtgatgggtcg
cctgtatcttatgtccagggaagcccaggatttttttttggagtagctgcttcgtgctta
catcaatttacaagagagggtacatacataatcactgtcactgcatataatgagttctac
aatgctactgatgtgcttggcccatactatgtagaaatgctgccggaaggattgattgta
acagtgaattccagcgtgattcataaaaatgaagttattttttttaatgcaagtctaaca
aggggaacacatgtgacgtacacctggaacatgggagatcagactacttatgttaatcaa
ggtccggttgtgcatcaccagtttttaacagcaggcgtctacactgtgatagtaaatgct
cgaaaccgtgtgggaagtatcttaaccaacaccagtgtgtctgtcctttacagaatgcag
cctgttcagatttatacagacaaacccatctatgcagcagatactgatattacatttgaa
gctgtaacttcagaaaccggcctgttggaatttgtgtggtactttggggataaaccacca
gtaaggacaacgtctaaaagtataaccacaagatattacacagcagacaggtataatgtg
atcgtcaatgcatcaaataggctgagctcatttacgtctgacatctaccccatcactatc
cagaaaaaagtcgaagccaacaggcttttatctgatgcgtctgttctggtgaatgccagt
gtcgccttcgattgcagaattaattctggtaccaatgttacataccagtggacctttggg
gatggcacttacaaaataggcaggagcactgaataccatgtctttcacagtatgggggag
ttcactgtgaaggtaacagtgtccaacctggtgagctctgtttcacttactcggcagatc
tttgttgtgtatgagccctgccagccgcctcctgtcaaaaacatgggtccccttaaagtg
caggtcagacgacaccaggatctgaatcttagggtgacgtttgaagctgatattaagtgt
aacatttcccaaggtttactctacagctggaccttctttgattcaaattatattccagta
aagcttcctctgattgacaccaacatgcagattatttacatccccaacaactttctggaa
tatgggcgatacactgctatagccagggtccaaattaaagggaatgtggtgtacagtaac
tacactgtgcccattgaggtgattcctacaccaccaatctgtgtgattgatggtggtaac
aatatattcatcagcagcaggaacaattccttaataacactgaatggagaaggatcattt
gacccggactatccagaaagtatcttaagctttgcttggaattgtgttcctgtcagtgga
atcgactcctcctgctttgactacaatgtttccaccaccgcctccacattcacgattcca
gccttcatacttaaaagcagatttgaccagtttcgctttactctaacagtccagagcggg
gatcgcttttctacagcagaagtgtttgtgaccatccaagagagtttactaaagacaata
aatgtgttttgctatcagtgcataggaaacactgttaattggaatgaaccattttcagtt
gaagctaaatgcgagacatgtgaaaacatctcagacctttcttttgtctggaacttgtat
ttagtgaatgcctctaatgaagacagcactgaagtaccattttgcaaatcgctcaatgtc
ggtggctcttcaagtttattcgttgacccttcatatggaggaagtgatcaagctacccaa
gcactcccaatcactgtgcctccttccacttatcctgctacttcttccaatgctttttct
gtcactatagctcctccagcttccatgtctcctaaccctgctaatgattcaggtacactt
actactactgccaccaactctaaaaatgccactataaaccctgctgctcttacccctaat
aatactgcactattttcaaacaactccacaaatacttcagtacaccaatcaatcacaggc
actaccactgttgagcagcctccccctgctagtaaagaagaccctccctttccccccttt
ctttttcctgtggagggacctgcgtcgggagggagaacgcgacgaaggagatcagcatct
aaaaccatcacatcagacatacctgtgcctaaagatgctgggagtttgaaaagcaggagt
cccagcagtaaaaagggtgccacggaagggccgctagtgcagtccggtgttgtcggcggg
cttcgaggtgatggcgtcctttctgaagggtcttccgggagctctgagggaactactttt
aatctaataccaactccaggcccccctgtttctgtcaatatctctgtctccagtggcaca
gtggttggaggaggagagagcagtagtgctgctaatcaaacctttggctctaacaacact
gagcttacagactttgacacacactacaatggaatccaagaagggggattggcctcagga
tcatcctcgggtggcagaccagcaggaagtgactctggaatctctgaagggggaggtaca
gcaagtggcggaacagccagtggtggaacaacgggtggtggttcgagcagtgacgatggc
agtaatctcgttgataattccaattctcttgtggtgctatcccctgttaccttgctggac
ttaaacagagggaagattgacaatcgcatctttgaaacctatacctcttcaggtatatct
tcatactttgtaacatttaagccatttattttgcaacccaaaatgctttacatgctggag
gtttctgcaaaatccacccatcagatcctgggtaaaagtcagttattcttctctataaat
gaagttccaaaaggcatgacctgccaggtacagccgatcagagggtacgaggtcagcact
gacttcagcatattttgcacttcagggaaggaggatctcctgtatcagtacagtttcagc
ataggaaactcttctcgaaagcttttatatgaaggacgagatgtccagtattacttcaac
cttcctgctggagatccatccgatggctataaagttaccatctacactgagattagtaat
agatttggtgcaagaacgaaaccatgcccagtaagcgtgaccgtcttgcccagttttcag
agaaacctgtcctccagctacaaccctgatgaagaactatatattgatggcctaaaaaac
ctttcaaggcttttgctcatgggaagtgacctagagattcgaaactatgtcattttgttg
accaatgttctgaaccgcctgagtttggagcctggcgccacagtagagctgcagacacga
acaaggagtgccttaatcgcttcagtgtgtggacttcacctcactcaccagggagcactg
attgataagctgtatatgcttaatgatttaatgggggttaaagagcagataaccttcagc
agtgcaaagcttgtcacaggtcatgtcaatgaactatcacagcgcttccaggagcctttt
accccagatagcttttttttggatgaatggacagtaaggcttctggtgagtctgctgtcg
aagtccattgaagtccctgacaacaccactgaagacggcatcgcgttcatcgctgatggg
ataaggacgactagagagctgctgctgaaatatgtggtttttataaaccacacccagttt
aatgtaaacaccagtctgatggagctccagactacccaacactacagctttcagaatgca
gtgcagagagccggcaccaccagattttacctgcctgacattttaaacaagcacataact
gcacagactggcaggaacagcacgtgctatatcagtcagcttgtgtccttcaagcaaaac
ctttacttctggggaacggcacctgttaagatcaatggggatgttgctgacctgtcgctg
tataactgcatcaccagaagaaagatcaacattaaagggcttacagaaccagtcaatgtt
gagtttgaaaagacatacaaaaatgtaagttgcttttcaaagttttcactgtttcggaat
aaaatgaatattcacaattttgaagtgacttctgaaaacttgatagaagcgctacaaatt
acactggatttcaataggccagctgagaaagtctttcccatcatgctgctgctgaggatg
cttgagaagccaactccaagtatctacaacattcagcaaattcacagctgggagagtaat
agagctcagattgtcctacctgcgggttcattaaaagacacaggcagttgctaccttgcc
ctcctcaatgctgattacaacagaacagacagaaacaagtatattgccagtgctgtgaac
tacaccatgactatccagtggacccagtgtctgtactgggatgacatcaaacagtggaaa
tccgatggctgctctcctgtacaaggcttgtcatcaaataaagttaactgcagttgcaac
catttaacaacgttcacaatggcaaaccggcaaataagtagcaactatgattttacagat
gtggctcagtttattagcctcattaacaacttggtcccatgcatcgtgatcgtcttcatc
ctgctcatctacatcctcctggttattgcctgcaagcaagccgatctgtacagcgaaaaa
aaaagtggttccgtcctcctgcaggacaacagcccttctgaccagcagctgtactcaatc
atcatcgacacaggcttccggtccagggcaggcactacagccaaggttcatattgtttta
catggtgaggatggtgtctcggagaccagggaattggactgccctgataaaccattattc
agcagaaattccagacacacattcatcttaagtactccagacagcctgggccccttatgg
aaagtccatctgtggcataacaatggcggccagtctccaagctggtacgttagccatgtg
attgtcaaggacctggtgactggcatgagctggttcttcccagccgagtgctggctggca
gtggataagggtgatgggaaagtggagcgagagctgacctgcctcagccacgggcctggg
ttaaaaaagctcctttactgtaagctgacggaatatttggaggattttcacttttgggct
tctgtgtacagccgtccttctcacagccagttctcccacacccaacgcctcacagtatgc
cttatactgctgctgggctatatgctgctcaacactgtgctcatttacatgaaggatgat
gagtttacggctgagttgggtctcattgacgtctctgccatctccctggtaacgggtttc
tttagtactcttgctgcactaccagttggagttctgttgtcactgctgttccgattcagc
aaggtaacagtcaaaaaagatccatcagcagagcagaacacgtcttcaaaagcatctgat
atctactctgtggaagttcaccgggatgccctgctgtcagaggacagtactttggaatct
tacatgtcgtggcaaaacctgcaacgctgggcacaagaaacgtggcggaaaaagcatgag
cggggcctggaatcccgctcgtccattgttgtctttgagcaggacagcgagtcgaacaat
aagaaggaaggcccgtgttcttccgattgcagctccagtggctttgaggactgcagctct
caagagaacggcaaagtcccacccaagaactttgagcacagcagcagtgaccttcgctca
ggcagctcactggatcgcagtctgtatgaacaccaccaagttttcggaagcagtacaatt
gtgcttcccttttggtgtcattacctggcatggacagtctgtttgttgcttgctatagtc
tgtattgtggtcactgtcctgctgggacttaagtttagtggtacgaaaagtcttctgtgg
attcactctttgttcttctccctgctgttttgtatttttgttgtacagcctttagtgatt
tttataatcgcagctgtggtgtcattgaaatacaaggaacgcagtgacttttacacaggc
tgcctggaaactgggcctgttctcgaagctgtgaaaccctgcttgaatggaggctctgaa
aactatcgccacagtgtacaccaggaacagcgtacagattttgacaggatcatagcagct
cgccagagggcacgctatctccgccttgctcgtccgcccactccagcacaactgaaggaa
gccagagataggataaggaaagaaggcttgatacagcacactctgagggagtttgtgctt
tacatcgtcatgttgctcctgctcatgtttgtaacctatggaaaattctccagtgaccaa
taccttctgaatcaggccgttaggactgagttcaccaagaatccgaagaaactgctttct
gaagtgaaaacagctgaggattggtggagctggagcttgacagcattattggagggtctg
tattgggacacctggtataacaatgcttctgcaagcgccaaggcgggtccccttaaagga
acatgtagtctgattggcgaaccggtgcttcagaaaatacaagttataaataacactggc
tgcacgattcccagcatgtttgctggcctgatcacagactgtgtgcctccttacaggcct
gaagtccacgatccaggcagcaaagagacctctgacagccagactgacacagtacgagtc
aatttgtgtggtcaaatagagtgctatgatggaaaaggaactactgtcaaactgggcaga
acaaaatctgaagcgtatcgcacgctgttgcagttgagtgctgacaggtggctcgacaga
agcaccagagcagtggtggtgaagttcacactctacaaccctccctccaacctcttcacc
actgtctccctgctggctgagaccccaccgacagggggcgtcattccttcagcatacatt
gagtcagtccgcatttatgatgtctcctctatcctagattacgtcatcatggcctttgag
ctcattttcctggctttgattcttcttcacctttacttccaagtctgtgcaatgcttcag
aaggggttgctggtttactggcaggaaccatggaattggctcgaggtggccatcattatc
atcagtctgttttactacacctattacatgtatcactttgtgctggctgtggaagtaata
gattacctacagaggggaaacttcaaagcatttgtggatctgagtttaatctcatcctgg
gaccagcttacacgttgtctccatggagtgatcatattccttctgttactgaaatgcctt
cgcctcctgtggattaataaagtcatcagcccctgtgtgacaatgctgcgtctttcctgc
tccagcataacactgccagtggtggctggcattattttcatgattgcctattcctgcctc
gggaacctcttgttcttatccacatctcatccattcggtactgttgtgaggtccttccag
actgtcctcatgcacttcgtgggagtgagcaagcttcagaccctgtcttccatgtacaaa
accaaccagctgtccatagcaatatactatgggacttttttcttcattatgtctgtcctc
tggataggaatgattgccggggttctcacctcgttggcccaagactcaaagaagtcttcc
agaagcaaacacctggtcactctcacagaggttatggtctatgctcgtgaaaggcttctt
gctttcatcgggagaaaaaggcatcaatcgccagacagccctacaacagggggcagtaac
ttttacttagatgaatttgagaatctcatggatgagcttctgttccgactcaacgctttt
tcaaatagccttcaccgttctctaccagccaaacagagaaactacctgggtgacgaaagc
cctctgatatcccagtctgattattattactgtccaggctcagagagcgcttctgtgaat
gaagacagtgttggaaagaaggtttataaaattgagcagaagctgttcaaaaacaaccca
gagatatataatcttttaatgtccaccaaagagaatgacttagctagtcagagacctctg
agatcacagcttgaaactgaaacgtttcgccatctgcatctgaaaaaccatggcagcccg
tcagcgacatccgtagacaattccgagaactgcaagcccagccatacacactcccaagat
agagaagattatctgtcagactctacgaagcccagtgttactctccctggaagtacaaat
ccatcaagcgagtcctgtgcttcaatgtcagattcctgtagtttgccagagcaatgcagc
agttgccagacaggttgtgcagtaaacccagatcattacaaccttgccaaactcggagac
gatttaccccacgtgctgtgtgggaccaagtgtcccgagaagctggctgcgcagtctatt
gaaagcaggacgagccaccagcagcggtccacgtctgccagtgtgtccagcaagagccgc
aaacctcttaaacgatctcacaccatcattatcaagcccttagagagccccattgaggtc
acagaaagccgggctggcagtaatgatgaggttggttatgctagtgaagagaaaacctct
gtatctgctaaagattcagtggatcagccaaccaaactgtcaagccctgagcgatcgtca
cagcacagcaacgccaaaggtcagaggtcagggccaaaagtgcaggaaggggccaagatg
aaaaaagataagcaaaaaaagaaaccaaagaaagctgatcaccactttttgattgccgag
gacgcacaagattcaaatctgcagaatgagcttactgttctaccggagtcactaagacag
tgctggtga
DBGET
integrated database retrieval system
