Polyodon spathula (Mississippi paddlefish): 121307867
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Entry
121307867 CDS
T07273
Symbol
cyldb
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase CYLD
KO
K08601
ubiquitin carboxyl-terminal hydrolase CYLD [EC:
3.4.19.12
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04217
Necroptosis
pspa04622
RIG-I-like receptor signaling pathway
pspa04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
121307867 (cyldb)
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
121307867 (cyldb)
04625 C-type lectin receptor signaling pathway
121307867 (cyldb)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pspa01002
]
121307867 (cyldb)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121307867 (cyldb)
Enzymes [BR:
pspa01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
121307867 (cyldb)
Peptidases and inhibitors [BR:
pspa01002
]
Cysteine peptidases
Family C67
121307867 (cyldb)
Ubiquitin system [BR:
pspa04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
121307867 (cyldb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAP_GLY
UCH
zf-C2H2_jaz
zf-C2H2_ZN292
Motif
Other DBs
NCBI-GeneID:
121307867
NCBI-ProteinID:
XP_041096108
LinkDB
All DBs
Position
59:complement(56042..64169)
Genome browser
AA seq
714 aa
AA seq
DB search
MEKKFFIVTRPQPISGRKTIEKGTMGCVEKEMEEEVICTLINYSSKLGCKLKKDNLQLIS
RHEAQLLISTDSLAKRLELLQNWKLFSAISALQENDLVVVRHKNEETPGLVKRLLEKGKK
GSNGLDVLKPMVFEVELLQEAERGYFQSRGSAYPVFNAGDILQVSLDDRRKPTFKADEYK
GAQKQRDLGRQNSDSHDVRRQTPERPSPHAALSPTAAVENGGLKRVVSGGFPQSALQTKP
LELGSLTELQASNGATVHGVVRWIGVPEGKTENWAGVELDYELKDCLDGQLGSQRYFYCD
KNKGMFVKLRDLRPDSRFLPAPNYKEPPCYPEPQAAAERRFEADSRNEDAPPIPESSALQ
LLEGRMKGIQGHYNSCYLDSALFSLFSFSLALDSVLHCPVVSEELIQSVLRRDIVNQLRR
QGFVPAENIMKLRQLLGCDSFTFEEKDPEEFLSVLLHQVLSVDPLLKIRSNEKTQDCYSY
QIILEREEAVSVPSVQLLLERSFLSCDLKFEEIPSCLIIQMPRFGKKFKMFPKIIPSTEL
DITDLLYNTPRECFICGALAELECYQCLRDPRLTPGMIKQYCQLCDKQVHSHRQRQDHQP
REISLPWDFPASTPVPRQKMELFAVLCIETSHYVSFVKYGPGRNSWLFFDSMADRRGNEN
IPEIKACPQVGEFLSQSEKGPVDVELGCADMFVKRLLCDSYMFMYQCPALSLYR
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atggagaagaagttcttcatcgtcaccagaccgcaaccgatatctgggcgcaagaccatt
gagaaaggcaccatggggtgtgtggagaaggaaatggaggaggaggttatatgcacgctg
attaactacagttcaaaactggggtgtaagctgaagaaggacaacctccagctgatcagc
aggcatgaagcccagctgttgatctctacagactcccttgcgaagcgactggagctcctg
cagaattggaaactcttctctgcgatcagtgccctgcaggagaatgatttggtggtggtg
agacacaaaaatgaggagacgccaggcttggtgaagcgactgctcgagaaggggaagaag
ggcagcaacgggttggatgttttgaaacccatggtgtttgaggtggaattgctacaggaa
gctgagcgcggatattttcaaagcagaggctctgcttatccagtattcaacgcaggggac
atacttcaagttagtctggatgacaggcgcaaaccaaccttcaaggcagatgagtataag
ggagctcagaagcagagggatctcgggcgacagaactctgactcgcatgatgtgagacgt
caaaccccagagaggcccagtccccacgcagcgctcagccccactgctgcagtggagaac
ggggggctgaagcgggtggtgtcggggggctttccccaatcagcattgcagactaaacct
ttggagctgggctctctgacggagcttcaggcaagcaacggtgccaccgtgcacggagtg
gtcaggtggattggagtcccagagggcaagactgaaaactgggctggggtcgagctggat
tacgaactgaaggactgtttagatggccagctcgggagccagcggtacttctactgtgac
aagaacaagggcatgtttgtgaagctcagggacctcagaccagacagcaggttcctccca
gcaccgaactacaaggaacccccctgctaccctgagcctcaggcagcagcagagagacgc
tttgaggcggatagcaggaatgaggacgcccctcccattcccgagtcttcagctctgcag
ctgctggaagggagaatgaaggggattcaaggacactacaactcctgctacctcgattca
gcactcttcagcttgttcagtttctctctggctcttgacagcgtgctgcactgtcctgtt
gtgtctgaggagctgatccagagcgtgctgaggagggacatcgtgaaccagttgcggaga
caggggtttgttccagcagagaacatcatgaaactacgccagctactgggctgtgactcc
ttcaccttcgaggagaaagacccggaggagttcctcagtgtcctgctgcaccaggtcctg
tctgtggatcccctgctgaagataaggtcgaatgagaagactcaggactgctacagttac
cagatcatcctggagcgggaggaggcggtgagcgtgcccagtgttcagttgctgctggag
cggtcctttctgtcatgtgacctcaagttcgaagagatcccatcgtgcttaataatccag
atgcccaggttcggaaagaagttcaaaatgtttcctaagatcatcccttccactgagctg
gatatcaccgacctgctgtataacaccccccgagagtgctttatctgtggagcattggca
gaactagagtgttaccagtgtttgagagaccccagactcacgccagggatgatcaaacag
tattgccagctgtgtgacaaacaggtccactctcacaggcagcggcaggatcaccagccc
cgagagatctccctgccctgggacttccccgccagcacccccgtgcccaggcagaagatg
gagctctttgctgtgctgtgtattgagaccagtcactacgtctccttcgttaaatacgga
ccagggagaaattcctggctctttttcgacagcatggctgaccgtcgtggaaatgaaaac
atccctgagattaaggcttgtccacaagtgggagagttcctgtcccagtcagaaaaaggt
cctgtggatgtggagctgggatgcgcggacatgtttgtaaagagactgctgtgcgattcc
tacatgttcatgtaccagtgtccagcgttgtctctgtacagatag
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