Polyodon spathula (Mississippi paddlefish): 121307881
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Entry
121307881 CDS
T07273
Name
(RefSeq) probable endonuclease 4 isoform X1
KO
K10771
AP endonuclease 1 [EC:
3.1.11.2
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
121307881
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121307881
Enzymes [BR:
pspa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
121307881
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
121307881
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AP_endonuc_2
TAL_effector
Motif
Other DBs
NCBI-GeneID:
121307881
NCBI-ProteinID:
XP_041096127
LinkDB
All DBs
Position
60:complement(58724..75664)
Genome browser
AA seq
465 aa
AA seq
DB search
MNVPSEVPYGFFIKFIPGCFSGCLARTGLSPSAGGVVPSPGPAVHCATLRARSEGRGERR
GGGVELGASSALLQVSWELEGSAHSVRPVLTPKRKKGQVTLKEGEGNRGKEKASRQRRKS
VKRGVKRESVDGLDSGTRSVMKRTKKLKSEGIKKEEEVPLPVQSSSSAEREMERGSVKME
GGRRKLIGAHMSIAGGLWNAVRDSVTIGGCVFGMFLGSQRSWKSRPLDEKAVAQFRQACS
QHGFTPDRILPHGSYLLNCGSPKPDVYEKSRAMLIDELKRCEQLGLTMFNFHPGSTLHDI
TVEECLDRIADSINHAHQHTTGVTTVIENMSCQGNTVGGKFSELRGIIDRVKDKSRVGVC
LDTCHAFAAGHDLSAVGGVKKMLDEFDWTVGLQYLKAVHLNDSKGKLGCHLDRHENIGEG
EIGLEGFRQIMNEPRLDNMPMILETPVRPDMDGSQEIQLLYSLCQ
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtcccttcagaggttccgtacggattttttatcaaatttataccaggctgtttt
tcgggatgtctggcaaggacagggttaagtccgagcgcagggggagtggtcccttctcca
ggacccgcagttcactgcgcaactctgagagcgcggagcgagggaaggggagagagacga
ggcggaggagtggagttaggggccagcagcgctctactgcaggtcagttgggagctcgag
ggctcggctcattcggtcagacctgtcctcactcccaaacgaaagaagggacaagtgact
ctgaaggagggagaggggaatagagggaaggagaaagcaagcagacagaggaggaaatca
gtgaaacgtggcgtgaaacgggagagcgtggatgggctggacagcgggaccaggtctgtc
atgaagagaacaaaaaaactaaagagcgagggaataaaaaaggaggaagaagtgccactg
cctgtacagtccagctcatcagctgagagagagatggagagagggagtgtgaaaatggag
ggaggaagaaggaagctcataggagcccacatgtccatagcaggtgggctctggaacgct
gtgcgggactccgttacgatcgggggctgtgtgttcggcatgttcctgggctcccagcgc
tcctggaagagtcggcccctggatgagaaggcagtggcccagttccgccaggcctgctcc
cagcacggcttcaccccagaccgcatactgccgcatgggtcatatctgctcaactgtggg
tctcctaaacctgatgtctatgagaagagcagagccatgctcattgatgaactgaagagg
tgtgagcagctgggcctgaccatgttcaacttccaccccggctccaccctccatgacatc
acagtagaggagtgtctggataggatagcagattccataaaccacgcccaccaacacacc
actggagtcaccacagttatagagaatatgagctgccagggtaacactgttgggggcaag
ttctcagaactgagagggattattgatcgagtgaaagataaatccagagttggagtctgt
ctggatacctgccatgccttcgcagccggtcacgacctctctgcagtgggcggagttaag
aagatgctggatgaatttgattggacggttggactgcagtatctcaaggcagtgcatctc
aatgactccaaagggaagctgggttgccatctggatcgtcatgagaacattggtgagggg
gagatcggattggagggatttcgacaaatcatgaacgagcctcgcctggacaacatgccc
atgatcctcgagacgcccgtcaggcctgacatggacggctcacaggagatccagttgctc
tactctctgtgccagtag
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