Polyodon spathula (Mississippi paddlefish): 121308033
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Entry
121308033 CDS
T07273
Symbol
sympk
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03015
mRNA surveillance pathway
pspa04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121308033 (sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
121308033 (sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121308033 (sympk)
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121308033 (sympk)
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121308033 (sympk)
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
121308033 (sympk)
U7-dependent histone pre-mRNA processing factors
121308033 (sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
121308033
NCBI-ProteinID:
XP_041096274
LinkDB
All DBs
Position
Unknown
AA seq
1181 aa
AA seq
DB search
MEVRKFVIGFIEEACKRDNELLLKLIANLNMLLKDESVNVVKKVILTMTHLYKVALQWMV
RLKVISDIQEACWEMVTTMKDEIMLMLDSENDGIRTHAIKFVESLIITLSSRTSDSEVPK
RQENDISLERIPKDHCYIRHNSLRQEGTTALDQLLKFMVHPAISSINLTVALGSLATIAR
QRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSVLKHASSFEFHGQITTLL
LDLGTQQQEIARNMPNLKDVRRRQRDEAEPGLKKIKTEPPLVEDDEDKDLDQAAAPLPKP
SSAQGTQSAIDITAEFLLPLLNPENVANLVLISMVYLPDTMPASFQATYTPVESAGTDSQ
IKHLGRLMATQMTSAGIGPGVEQMKLAKEALKEEVELKPESVLIKRRLSALSMGQAISVL
GAYSGKPEEEEEPLAKRRPEPILPTAQTKTSGVGGRKKVFRLADVIQPLSETQVEKLTSM
SVKRILQSEKAIARSGMSHVRVKILSRLVTQFEGSMKAEVLDFVLEDIRNRSDLAFALLY
QEYNAYLSNCPSGSLDSYDECLIGLLSGLQEKPDQRDGLFTKLVLEAPLITETALEVIRR
YCEDETRAYLGMTTLRDLIFKRPSRQFQYLHVLLDLSSHEKDKVRTHALTFIKRMYEKDQ
LRDYIEKFALNYMQLLVHPNPPSMLFGADQDTEVAAPWSEDTVKQCLYLYLTLLPLSHKL
IHELASVYTEAIADIKRTVLRVIEQPIRGMGMSSPELLLLVENCPKGAETLVTRCLHILT
DKVPPSQELVRRVRDLYQKRVPDVRFLIPVLNGLEKKEVIQALPKLIKLNPVVVKEVFNR
LLGTQHSEGSSTVSPLTPGELLVSLHNIDSTRCDMKSIIKATNLCFGEKNVYTSEVLAVV
MQHLMEQSPLPMLLMRTVIQSLTMYPRLSGFVMNILSRLIIKQVWKYPKVWEGFIKCCQR
TKPQSFAVLLQLPPPQLSSVFDKCPELRDPLLVHVHSFTPHQQAHIPRSIMTVLEANLKP
DQESPEPKEHDEPVGGEGAPRATLPDVIAARLEQEKELKRQLEEEHQRVKGHPAELGATE
LGEAMELREEGAANEDSALILNSSQEDAALGVKDNQKAISSETVKDSDKLVLDQVEPMDE
PLADSSPTTSQSQEAMEQGEGGGLTEDLLAPHKEMEVNVVE
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atggaagttcgcaagtttgtcatcggattcattgaggaggcctgtaaacgagacaacgag
ctgctgctgaagctgattgccaatctgaacatgttgctgaaagatgaaagtgtgaacgtg
gtgaagaaagtgattctcacaatgactcacctgtacaaggtggcgctgcagtggatggtg
aggttgaaggtgattagcgacatacaagaggcttgctgggagatggtgacgaccatgaag
gatgaaatcatgttgatgctggactcggaaaacgacgggatccggacgcacgccatcaag
tttgtggagagcctgatcatcaccctgtcgtcgcgcacatccgattcagaggtgccaaag
aggcaggagaatgacatcagcctggagcgcatacccaaggaccactgctacattcgacac
aactcactgagacaggaggggaccacagccctggatcagctcctcaagttcatggtccac
ccggccatctccagcatcaacctgaccgttgcgctgggctccttggcaaccatcgctagg
caacggcccatgttcatgtcggaggtcatccaggcctacgagaccctgcacgcaaacctg
cccccgactctggccaagtcccaggtgagcagcgtgcggaagaacctgaagctgcacctg
ctgagcgtcctgaagcacgcgtcctccttcgagttccacgggcagatcaccacgctgctc
ctggacctgggcacgcagcagcaggagatcgcccgcaacatgcccaacctgaaggacgtg
cgcaggcggcagcgggacgaggctgagccaggcctcaagaagatcaagacagagcctcct
ctagtggaggatgatgaagataaagacctggatcaggctgcagccccgttaccaaagcct
tcctcagcccagggcacccagtctgccatcgatatcacagcggagttcctgctgcctctg
ctcaacccagagaacgtggccaacctggtgttgatcagcatggtgtatctccctgacacg
atgcccgcctctttccaagccacctacaccccagtggagtctgccggcaccgactcgcag
atcaaacatcttggccgtctcatggccacacagatgacttctgctggcatcgggccaggg
gtggagcagatgaagctggctaaggaagcgctgaaggaggaggtggagctgaagcctgag
agcgtgctgatcaagaggcgtttgtcagcgctgtccatgggccaggccatctccgtgctg
ggggcctactccgggaagccagaggaagaggaggagcctctcgccaagcgccgcccggag
cccatcttacccactgcccagaccaagacatcgggagtaggtgggcgcaagaaagtgttt
cgattggctgatgtgatccagcccctgtcggagactcaggttgagaagctgacaagcatg
tcagtcaagcgcattctccaatcggagaaggccatcgctcgcagtgggatgtcccatgtg
cgtgtgaagatcctgtcccgtctggtcactcagtttgagggcagcatgaaggcggaggtg
ctggacttcgtgctggaggacattcggaaccgcagcgacctggccttcgccttgctttac
caggagtacaacgcctacctgagcaactgcccctccggctcactggacagctacgacgag
tgtctcatcggactgctctccgggctgcaggagaagcccgaccagagggatgggctgttt
accaagctggtgctggaagctcctctgataacagagacggccctcgaagtgatccgcaga
tactgcgaggacgagacgcgtgcgtatctggggatgaccacactgcgagacctgatcttc
aagcgcccgtccaggcagttccagtacctccacgtgctgttggacctcagctcccatgag
aaggacaaggtgcgcacgcatgcactgaccttcattaagaggatgtacgagaaggaccag
ctgcgtgattacatcgagaagtttgccctgaactacatgcagctgctcgtccaccccaac
cctccgtcgatgctgttcggggccgaccaggatacagaggtggcagccccctggtcggag
gacacggtgaagcagtgtctgtacctgtacctaactctcctccccctgagccacaaactg
atccatgagctggcgtcggtctacacggaggccatcgcggacatcaagcgcacagtgctg
cgggtcattgaacagcctatccgcgggatggggatgagctctccggagctgctcctgctg
gttgagaactgtccgaagggggcggagacccttgtgacccgctgcctgcacatcctcact
gataaagtccccccgtcccaggagctggtgaggcgtgtgagggacctgtaccagaagaga
gtcccggacgtgcgcttcctcatccccgtgctcaacgggctggagaagaaagaagtgatc
caggccttgcccaaactaatcaagttaaacccagtcgtggttaaggaagtttttaacaga
ctacttggcacacaacacagtgaaggcagctcaacagtgtcccctttgaccccaggagag
ctcctggtatccctgcacaacatcgactccaccaggtgtgacatgaagagtattataaaa
gccacaaacctgtgtttcggggagaagaacgtgtacacgtcagaggtgctggctgtggtg
atgcagcacctgatggagcagagcccgcttcccatgctgctgatgaggacagtcatccag
tctctcaccatgtatcctcggcttagcggcttcgtcatgaacatcctgtcccgcctcatc
atcaagcaggtgtggaagtaccccaaggtttgggagggctttataaagtgctgccagcgg
acgaagccccagtcgttcgcagtgctgctgcagctcccccctccccagctcagcagtgtt
ttcgacaagtgtccggagctgagggaccccctgctggtccacgtccactccttcacccca
caccagcaagcccacattcccaggtccatcatgactgtcctggaggcgaacctgaaaccg
gatcaggaatctccagaacccaaggagcacgacgagccggtgggtggagagggggctccc
cgggccacgctgccggacgtcatagcggctcggctggagcaggagaaggagctgaagagg
cagctggaggaggagcatcagcgagtgaaggggcatccagcagagctgggggccacagag
ctgggggaggctatggagctgcgagaggagggggccgccaatgaggacagcgccctgatt
ctcaactccagccaggaggacgctgcactcggcgtgaaggacaaccaaaaagccataagc
agtgaaactgtgaaagacagtgacaaattagtccttgaccaagttgaacccatggatgag
ccccttgcagactctagtcccacaacctcccagtcacaggaagccatggagcagggtgaa
ggagggggcttgacagaggacctcctagcgcctcacaaggaaatggaggtcaatgtcgtg
gagtag
DBGET
integrated database retrieval system
