KEGG   Polyodon spathula (Mississippi paddlefish): 121308196
Entry
121308196         CDS       T07273                                 
Symbol
snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
pspa  Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pspa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    121308196 (snrnp40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pspa03041]
    121308196 (snrnp40)
Spliceosome [BR:pspa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    121308196 (snrnp40)
 Complex C
   U5 SnRNP specific factors
    121308196 (snrnp40)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_IFT122_1st Beta-prop_THOC3 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st Beta-prop_WDR3_2nd EIF3I Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_EML_2 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st DSE1_N Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_Aladin PAC11 Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th Beta-prop_WDR41 Beta-prop_EIPR1 Beta-prop_SPT8 ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_NOL10_N WD40_RFWD3 CFAP251_N ASA1 Beta-prop_Vps41 Beta-prop_IFT140_1st eIF2A Beta-prop_WDR75_2nd Beta-prop_WDR19_1st TRM82_WD Beta-prop_WDR35_TULP_N Beta-prop_VPS8 Beta-prop_ACSF4 Beta-prop_NWD2_C WDR54 WD40_like
Other DBs
NCBI-GeneID: 121308196
NCBI-ProteinID: XP_041096398
LinkDB
Position
Unknown
AA seq 350 aa
MIEQQKRKGPGPNDMALVPALKKPRSDMAAAPGQQQLMPMGPPRSSSLQAPIMLLSGHEG
EVHCCKFHPNGATLASAGFDRLILMWNVYGDCDNFATLKGHSGAVMELHYNTDGSLLFSA
STDKTVGVWDSETGERMKRLKGHTSFVNSCYPARRGPQVVCTGSDDGTVKLWDIRKKAAV
HTFQNTYQVLSVTFNDTSDQIISGGIDNDIKVWDLRQNKLIYTMRGHADSLTGLSLSSEG
SYLLSNSMDNTVRIWDVRPFAPKERCLKIFQGSIHNFEKNLLRCSWSPDGSKIAAGSADR
FVYVWDTTSRRILYKLPGHAGSVNEVAFHPEEPIVLSGSSDKRLYMGEIQ
NT seq 1053 nt   +upstreamnt  +downstreamnt
atgatcgagcagcagaagaggaaaggccccgggcccaacgacatggccctggtcccggcc
ttgaagaagccgcgcagtgacatggcggcggctccggggcagcagcagctcatgcctatg
ggcccccccaggagctccagtttgcaggcacccatcatgcttctcagtggacacgaggga
gaagttcactgctgcaagtttcatcccaatggtgctaccctggcatcagctggattcgac
agactcatcctgatgtggaatgtttatggtgactgtgataacttcgccacactcaagggc
cacagcggggctgtcatggagttgcactacaatacagatggcagcttgctgttctcagct
tccacagataagacggtgggggtgtgggacagcgagacgggcgagaggatgaagaggctg
aagggacacacgtcgttcgtgaactcctgctacccggccaggcgcggcccacaagtcgtg
tgcacaggcagcgacgacggcactgttaaactttgggatatccgtaagaaagctgccgtg
cacacgttccagaacacctaccaggtcctgtccgtcacattcaacgacaccagcgaccag
atcatatctggagggattgacaatgacatcaaggtgtgggacctgcgacagaacaagctg
atttacacgatgcgcggccacgctgactctctgaccggactcagcctgagctcagagggc
tcctacctgctctccaactccatggacaacacagttcgtatctgggacgtacgccctttt
gcaccaaaagaaaggtgtctgaagatattccaaggaagcattcacaactttgaaaagaac
cttctaagatgttcttggtctccagatgggagcaaaatagcagcagggtctgcagacagg
tttgtgtatgtgtgggacaccacctctcggaggatcctctacaagctgcccggtcacgcc
ggctctgtgaacgaggtcgccttccaccctgaggagcctattgttctttcaggatccagt
gacaaaagactgtacatgggagagatccagtag

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