Polyodon spathula (Mississippi paddlefish): 121308320
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Entry
121308320 CDS
T07273
Name
(RefSeq) endoribonuclease ZC3H12A-like
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121308320
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
121308320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
Regnase_1_C
zf-CCCH
zf-CCCH_2
zf-CCCH_4
PP2C
Motif
Other DBs
NCBI-GeneID:
121308320
NCBI-ProteinID:
XP_041096582
LinkDB
All DBs
Position
Unknown
AA seq
538 aa
AA seq
DB search
LLSLSTCWKFDFFFNLFFSHGNKEVFSCRGILLAVNYFIDRGHTDITVFVPSWRKEQPRP
DVPITDQHILRELEKKKIMVFTPSRRVGGKRVVCYDDRFIVKLACESDGIIVSNDTYRDL
QSERQEWKRFIEERLLMYSFVNDKFMPPDDPLGRHGPSLDNFLRKKPLVQEHQRQHCPYG
KKCTYGVKCKFYHPERINQSQRSVADELRANAKLSTTRAMSHFSPLKDEKKPVLPRKSSH
PDVHSMASLEQEMEQKLMLERRNSLHKGQITENSLIIKGAASSKRPSKKVTFNQCSHHSP
TKIDSFPYPSQEPLDSGLGSYESQYSEMMPRGPQRHCEHYHPEQRGSGRYSNCSNSRPVY
HHSQSLDQHDSYQQYNCSQTPMTARASFHQYNQELPNSRSSNMMDHGGHCYPGYGRPVYQ
GVVGSYSLPDEYNPGSVQPQREYWSDPFQVAAHCRSSSLQDHQRFQQYLPSAVYNDQQSH
QWPQQDPYTKEREDVRKKLLAIFNPHQVDKAMSMFPNLFDPQVLAAEILTLKSRGELM
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
ttgttgtccttgtcgacctgctggaagtttgattttttttttaatttatttttcagccat
gggaataaggaggtcttttcctgccgtgggatcctgctagctgtaaactattttatagac
aggggacacactgatatcacagtctttgtaccatcatggagaaaggaacaacctaggcct
gatgtccccatcactgaccagcatattctcagagagcttgagaagaagaagatcatggtg
tttacaccgtcgcgacgggtcggtgggaagagggtagtttgttatgacgatcgattcatt
gtcaagctggcctgcgagtccgatggcatcatcgtgtcaaacgacacttatagagacttg
cagagcgaacgccaagaatggaagcgcttcattgaggagcgcctgctgatgtattcattt
gtcaatgacaagtttatgcctcctgatgatcctcttggacggcatggtcctagcctggat
aattttctgaggaagaaaccacttgtacaagaacaccaacggcaacactgcccctatggc
aaaaaatgcacttatggagtcaagtgtaaattctaccacccagagcggattaaccagtct
cagagatctgtggctgatgagcttcgggcaaatgctaagctttctacaaccagggctatg
agtcactttagccctctgaaggatgagaagaagccagtcttgccaaggaaatcctcccat
cctgatgtgcactcgatggcatccctggagcaggaaatggaacagaagctgatgctggag
cgaagaaactctctgcataaagggcaaatcactgagaattcactcataataaaaggggcc
gcttcatccaagaggccttccaaaaaggtgacatttaaccagtgcagccaccattcccca
acaaaaattgactctttcccctacccttcacaagaacctttggattcaggcctgggatcc
tacgagagccagtattctgaaatgatgcccaggggaccacagagacactgtgagcattac
catccagagcaaaggggatctggcaggtacagcaactgttccaatagtcgaccagtttac
caccactctcagagcctggatcagcatgacagctatcagcagtacaactgttctcaaaca
ccaatgactgccagagctagcttccatcaatacaaccaagagctaccaaactccaggtct
tcaaatatgatggaccacgggggacattgctatccagggtacgggaggccagtgtaccag
ggtgtggtgggttcttacagccttccagatgagtacaacccaggctcagtgcaaccccag
cgggaatactggtcagatccatttcaagtagctgctcattgcagatctagcagcctgcag
gatcaccaaaggttccagcagtatttaccaagtgcagtgtacaatgatcagcaatcgcac
cagtggccccagcaagatccctataccaaagaacgggaggatgtccgtaaaaagttgctt
gccatctttaacccccatcaggtggacaaggccatgagcatgttcccaaacctgtttgac
ccccaggtccttgctgctgaaatcctcacgctcaagtcaaggggcgagcttatgtaa
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