Polyodon spathula (Mississippi paddlefish): 121308369
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Entry
121308369 CDS
T07273
Symbol
rbbp4
Name
(RefSeq) histone-binding protein RBBP4
KO
K10752
histone-binding protein RBBP4
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03082
ATP-dependent chromatin remodeling
pspa03083
Polycomb repressive complex
pspa04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121308369 (rbbp4)
03083 Polycomb repressive complex
121308369 (rbbp4)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
121308369 (rbbp4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pspa03036
]
121308369 (rbbp4)
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
121308369 (rbbp4)
Histone modification proteins
HAT complexes
HATB complex
121308369 (rbbp4)
HDAC complexes
Sin3A-HDAC complex
121308369 (rbbp4)
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
121308369 (rbbp4)
PRC2.2
121308369 (rbbp4)
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
121308369 (rbbp4)
Heterochromatin formation proteins
Other heterochromatin formation proteins
121308369 (rbbp4)
Chromatin remodeling factors
NuRD complex
121308369 (rbbp4)
NuRF complex
121308369 (rbbp4)
NuRF complex (fruit fly)
121308369 (rbbp4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR75_1st
Beta-prop_EML
EIF3I
WD40_MABP1-WDR62_2nd
WD_LRWD1
Beta-prop_WDR19_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_DCAF12
WD40_RFWD3
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_RIG_1st
eIF2A
MIOS_WD40
Beta-prop_SPT8
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
121308369
NCBI-ProteinID:
XP_041096660
LinkDB
All DBs
Position
Unknown
AA seq
424 aa
AA seq
DB search
MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD
FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK
INHEGEVNRARYMPQNPCIIATKTPTSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG
YGLSWNPNLSGYLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE
SLFGSVADDQKLMIWDTRSNNTSKPSHAVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAE
DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGAADA
EVQG
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggcggataaagaagcagcgtttgacgatgcggtggaggagcgtgttattaatgaggag
tacaagatatggaagaagaacacccctttcctgtatgacctggtgatgacacacgctctg
gagtggcccagtcttacggcacagtggttaccagatgtcaccaggcctgaagggaaggac
ttcagcattcacaggctggtgctcggcactcacacgtctgatgaacaaaaccaccttgtc
atcgccagcgttcagctgcccaacgatgatgcccagtttgacgcttctcattatgacagc
gagaaaggagagtttggcggatttggatcagtcagcgggaagattgaaatagaaatcaaa
atcaaccacgagggggaagtgaaccgggcccgctacatgccacagaacccgtgcatcatc
gctacgaaaaccccaaccagtgatgtgctggtgttcgactacacaaagcacccctcaaaa
ccagatccctcgggcgaatgcaaccccgatctgcgtttacgagggcatcagaaagaaggg
tacggtctgtcctggaaccccaacctcagcggctacctgctgagcgcgtcggacgatcat
acgatctgtctgtgggatatcagcgctgtcccgaaggaggggaaggtggtggacgctaag
acaatcttcaccgggcacacagcggtggtggaggacgtgtcgtggcatctgctgcacgag
tctctctttggatcagtcgctgatgatcaaaaactcatgatctgggacaccaggtctaac
aatacatcaaaaccaagccatgctgtcgatgcccacactgccgaagtgaactgcctgtcc
ttcaacccctacagtgaatttatcctggcaacaggctctgccgacaagactgttgcactt
tgggatttgcgtaacttgaaactgaagttacactcgtttgagtctcacaaagatgaaatc
ttccaggttcagtggtctcctcataatgaaactattctggcatccagtggaactgacagg
cggctcaatgtctgggatttgagtaaaatcggcgaggaacaatcccctgaagatgcagag
gatggacccccagagttgctgtttatccacggcggacacacggccaagatttctgatttc
tcatggaaccccaatgaaccgtgggtgatatgctctgtatcagaggacaacatcatgcaa
gtctggcaaatggctgagaacatttacaatgacgaagaccctgaaggagctgcagatgca
gaagtgcaaggctga
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