Polyodon spathula (Mississippi paddlefish): 121308424
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Entry
121308424 CDS
T07273
Symbol
trpv1
Name
(RefSeq) transient receptor potential cation channel subfamily V member 1 isoform X1
KO
K05222
transient receptor potential cation channel subfamily V member 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
121308424 (trpv1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pspa04040
]
121308424 (trpv1)
Ion channels [BR:
pspa04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
121308424 (trpv1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ion_trans
Ank
Motif
Other DBs
NCBI-GeneID:
121308424
NCBI-ProteinID:
XP_041096739
LinkDB
All DBs
Position
Unknown
AA seq
812 aa
AA seq
DB search
MKRFESTDMDRSVTSETTLTLETEDYLSEDENPQPVKTPKNKPKSMLLGNAFGNKEKDSS
KAPMDTVCQEERAAVKVRVNVNFDRITSGDAAMSSKDRYPHGRFDMKTLFAAVASGDVSQ
LEGLYEYLRKNQKRLTDSDFIDCSNGKTCLLKALLNLKKGRNDTIELLLDIAEKTDDLPK
LVNSVYTDCYFKGQSAIHIAIERRSKYYVELLVSKGANVQGKASGKFFQQKKGNGFYFGE
FPLSLAACTNQLDIVTFLMVNPYQKADITAQDSIGNMVLHVLVTIADNTPENTNFVTMMY
DAILLRAAKLHPKLCLEDIANNEGLTPLKLAAKTGKIGIFRHIIRREIDDKECRHLSRKF
TEWVYGPVHSSLYDMNSIDSYEDNSVLEIIAHGCEIPNRHELLQLEPLNKLLQEKWDRFA
GFMFYFDFFCYVVYLVIFTTVSYYRLEGKPPFEIEASVSGKLRLAGQLISVAGALYFFFK
GIKDFVIKRPTFQSLLLDGYCDILFFLQALMFLTSSVLYTSGMEEYVALLVLSQALGWIN
LLYFSRGFQHMGIYSVMIQKMILRDIMRFLFVYMVFLFGFSTALVTLIEDDPPQGQNATE
GSKQQDCKRETYNNIYFTTMELFKFTIGMGDLEFTGQYKFKFVFYSLLICYIILTYVLLI
NMLIALMGETVDKISKESKSIWKLQRAITILNLEKRLPNCLKTKLRSGVIKELGLTAGED
SRRCFRVEEVNWTHWNCNLGIINEDPGHGTGPSITSPEPTPRTRERSWRRIIPVLRQLNQ
ELRPPGNQQQQQEEEEEMLTIRASSSQSEHRD
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgaagaggtttgaaagtacagacatggatcggtccgtcacctcagagaccacattaaca
ctggagactgaggactacctgagcgaggatgagaacccccagccagtcaaaacccccaag
aacaaacccaaaagcatgctcctgggaaatgcctttgggaataaggagaaagacagcagc
aaagcacccatggatacagtttgccaagaagaaagggcagcagtgaaagtgagggttaac
gtcaatttcgaccggataacttctggagatgctgctatgagcagtaaggaccgctaccca
catggcaggtttgatatgaaaacactgtttgctgctgttgcctctggagatgtgtcccaa
ctggagggattgtatgaatatctgaggaagaaccagaaacgcctcacagattcagacttt
atagattgtagcaatgggaaaacctgcttactgaaggctctgctaaacctgaagaaagga
agaaacgatacaatcgagctgctgcttgatatcgccgaaaaaacggacgacttgccaaag
cttgtgaactcagtatatactgactgctacttcaaaggacagtcagcaatccatattgct
atagagagaaggagcaagtactatgtggagctactggtatcaaagggagccaacgttcaa
ggcaaagccagcgggaaattcttccaacaaaagaaggggaatggcttttattttggtgag
tttcccttatccttggctgcctgtactaaccaactggacatcgtgacattcctgatggta
aatccctatcaaaaagccgacatcacagcccaggactccattgggaatatggttctgcac
gtgctggtcaccattgctgacaatactccagagaacaccaacttcgtcaccatgatgtac
gatgcgattctgctgcgggctgccaagcttcacccaaagctttgtctggaagacattgcc
aataatgaaggactgactccattaaagcttgcagcaaagaccgggaagattgggatcttc
aggcacattatcaggcgagagatcgacgataaggagtgcagacacctgtccaggaagttt
acagaatgggtgtacggaccagtgcattcatctctgtatgacatgaacagcatcgactcc
tacgaggacaactcggtgctggaaatcattgcgcacggttgtgaaataccaaatcgacat
gagttactgcaactggagcctctcaataaactcctgcaggagaaatgggacagattcgct
ggctttatgttttactttgattttttctgctatgttgtgtacctggtcatatttacaact
gtttcctactacagactggaaggaaagcctccttttgaaatcgaggccagtgtgagtgga
aaattgcgtcttgctggacaactgataagtgttgcaggagctctttattttttcttcaaa
gggattaaagactttgtcattaagcgtccaacatttcagagtttattgctagacggctat
tgtgatattcttttttttttgcaggcgctcatgttcctcacctcctctgtgctgtatacc
tctggcatggaagagtatgtcgctctgctggtcctgtctcaggctcttggctggatcaac
ttgctttacttctccagagggttccagcacatgggcatctacagtgttatgatacagaag
atgatcctgagagatattatgcgctttctgtttgtctacatggtgttcctctttgggttt
tctacagccttggtgaccttgattgaagacgatccacctcaaggacaaaacgcaactgaa
ggaagtaaacagcaagactgcaaaagagaaacatacaacaatatctatttcaccaccatg
gagctgttcaagtttaccattggaatgggcgacctggaattcaccggacaatacaagttc
aagtttgtcttttactccctgctcatctgttacatcatcttgacctacgttctcctgatc
aacatgctgatcgcgctgatgggagagaccgtggacaagatttcgaaggaaagcaagagc
atttggaagcttcagagagccatcacaattttgaacctcgagaaaagattgcccaactgc
ctgaagaccaaactacgatcaggagtgataaaggagcttggtctcaccgctggagaagac
agcaggaggtgtttcagagttgaggaagtgaactggactcactggaactgcaatctgggc
atcattaacgaggatcctggacacgggacgggtccgagtatcacttctccagaaccaaca
cctaggactagagagcggagctggcgcagaataattccagtgttgaggcagctgaatcag
gagctgcgcccccctgggaaccagcagcagcagcaggaggaggaggaggagatgctaacc
atccgtgcctcctcgtcacagagcgagcacagagactag
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