Polyodon spathula (Mississippi paddlefish): 121308540
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Entry
121308540 CDS
T07273
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM50-like
KO
K12024
tripartite motif-containing protein 50/73/74
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121308540
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
121308540
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SPRY
PRY
zf-RING_UBOX
zf-B_box
zf-C3HC4
zf-C3HC4_4
zf-C3HC4_2
zf-C3HC4_3
TRIM_CC
zf-RING_2
zf-RING_5
zf-Nse
Apolipoprotein
Sina_RING
RING_XB3-XBAT31
Prok-RING_4
DASH_Spc34
MTUS1_CCDC69_CC1
NPV_P10
DASH_Dad4
Motif
Other DBs
NCBI-GeneID:
121308540
NCBI-ProteinID:
XP_041096931
LinkDB
All DBs
Position
Unknown
AA seq
494 aa
AA seq
DB search
MSRSSSLVCLENQLLCPICLEVFAEPLMLQCGHSYCKSCLSSMTLDPYGQLRCPVCRCEV
DGGSSPPNVSLARIVEAMRELNDSHPELESCLQHHNPLSLFCEQDQAVICGLCSSIGAHR
NHKITPLTSVYSRMKEDCSALLTEIQTQKRKLEGQICKMAYNKSRVTNESDVFKWVIRKE
FGELRRCIEEEESIFMHTVESRAAALINTLQKQVDEMAENLGKFQEIEGTLEQLNNESQL
NFIRKYGSIAPGCREAQQTQQRTDRVYSAITFKPGFHHDDIKISVWKKLHRRVLPAPEAL
KLDPLTAHPMLRLSVNDTVVECGALVNRLPNNPERFSYSYCTLTSRGFSSGKHYWEVTVG
SKSKWRLGLIKGTTSRKGKLPKNPENGVWLIGLKDSRLYEAFAHQRTALPLASRPAKIGV
FLDYEKGELTFYNADSPQELSFIYSFQTELQGKVYPLLDTCWHERGGNTLPLILNQPHAG
KHASEPDPASLTQE
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggagctccagtttggtgtgtttggagaaccagctactgtgccccatctgcctg
gaggtgttcgccgagcccctgatgttgcagtgcggccactcctattgcaagtcgtgcttg
agctcgatgaccctcgacccatacggccagctccggtgccccgtgtgccgctgcgaggtg
gacgggggcagctcccctcctaacgtctccctggcccggattgtggaagccatgcgggag
ctgaacgactctcacccggagctggagagctgcctgcagcaccacaacccgctgagtctc
ttctgcgagcaggaccaggcggtcatctgcgggctgtgcagcagcattggcgcccaccgg
aaccataagatcacccccctgaccagcgtgtacagcaggatgaaggaggattgttctgct
ttgttgactgagattcagacgcagaaaagaaagctggaggggcagatctgcaaaatggct
tacaacaaatcgcgagtcacaaacgagtctgatgttttcaagtgggtgatccggaaggag
tttggggagctgcggcgctgtattgaggaggaggagtccatcttcatgcacactgtggag
agcagggcagcggcgttgatcaacaccctacagaaacaggtggacgagatggcagagaac
ctgggcaagttccaggagatcgaggggaccctggagcagctgaacaatgagagccaactc
aacttcatcaggaagtatggctccattgctcctgggtgcagagaggctcagcagacgcag
caaaggacagacagggtttacagcgccatcaccttcaaaccgggcttccaccacgatgac
atcaagatcagtgtctggaagaagctgcacaggcgggtcctgccagccccagaggctctg
aagctggaccccctgacagcccaccccatgctcagactgagcgtcaatgacacggtggtg
gagtgcggggccctggtcaaccggctgcctaacaaccctgagcgtttcagctacagctac
tgcacactcacaagccgcggcttctcctcgggaaagcactactgggaggtgaccgtcggc
agcaagagcaagtggcgcctggggctcattaaagggactaccagccgcaaaggcaagctg
cccaagaaccccgagaacggcgtgtggctcatcggcctgaaggatagccggctgtacgag
gccttcgcccaccaacgcaccgccctgcccctggcatcgcggcccgccaagatcggagtc
ttcctggactacgagaagggagagctgaccttttataatgccgacagccctcaggagctg
agcttcatctacagcttccagaccgagctgcagggcaaggtgtacccgctcctggacacc
tgctggcacgagagaggaggcaacacactgccgctcatcctcaaccagccacatgcgggc
aagcatgcctcagagccagacccagcatccttaacacaggagtga
DBGET
integrated database retrieval system
