Polyodon spathula (Mississippi paddlefish): 121308614
Help
Entry
121308614 CDS
T07273
Symbol
scarf1
Name
(RefSeq) scavenger receptor class F member 1
KO
K24318
scavenger receptor class F member 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
121308614 (scarf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121308614 (scarf1)
Membrane trafficking [BR:
pspa04131
]
Endocytosis
Phagocytosis
Scavenger receptors
121308614 (scarf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_2
EGF_Teneurin
Motif
Other DBs
NCBI-GeneID:
121308614
NCBI-ProteinID:
XP_041097030
LinkDB
All DBs
Position
Unknown
AA seq
880 aa
AA seq
DB search
MRVLPVGLCVWFCFLSCDSQELDPKGRNVCQGESESAALGCCPGWKQQGTDCPVPLCEGA
SACGEDEVCVKPGFCRCKHGYYGPNCKTRCPTMYWGPECKEFCACHPHGRCDPVTGQCTC
NPNRWGSLCQHPCRCGRHGRCDPLHGNCTCEPGWFALACNKPCQCQPASSTCAPATGRCL
CHQGYWGKKCSLLCNCPHSPCDQDTGTCQCTAGWWGPLCDRLCDCRHGGVCDPTTGGCVC
QPGYQNPTCSERCSAGFYGNQCQNRCGRCRQAQPCSPTDGFCVACEPGWNGTRCDQICPH
GYHGDGCKLECPRCRNGEPCDPVTGNCSHCDPGWIGPRCDSQCPEGLYGAHCRFECSPCN
HGQCDHVTGSCICEPGYQGDSCNATCTGAFYGVNCSTPCDCYGDSCHLVTGGCHYRSGGR
GTLIAGVLTPLLLILMLLTCCCCCGGGSQHEPKDRLAVADGGPLARMKHHVHGVLGNLSS
AVPCFSLGSSTLPRVTVSHHDAEVTFNHSFIEPPSAGWASENSFSSFDSEDGGPVYCLPP
KEDIATVAGGEFQEMSSKCNIFHDASAFNAEDVSQPFAIPRTSSIAKAKRPSVSFAEGTK
FGATEIPNINSKPKTPWGIPKLLTIQSQPSAGEGVGEETAQGEDSQLYESTEILRANPEQ
ADETASHLKPARRRTMSNGMRDAAAQQITEEPVSEESGSPEKISTVCVMAGGAGYPSKPQ
AESSKEGPVQAVLRRLGSLQQHKDAASKPRGKGDSISKPPRRKLGARAGPWQQGAADSST
SDESPMKPTRTQVKPLNATGSATSVQEDATENEPLIPSSSTLGNGVMTSGEEAGTGQEMV
GSQSCDQNPEGGTEQDYLGTASQNDSDHEAPKYENVACFK
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgagggttcttccagtcggtctttgtgtgtggttctgctttttatcctgcgattcccag
gagctggatccgaagggaaggaatgtctgtcagggagagagtgagtccgcagctctgggg
tgctgtcctgggtggaagcagcaggggacagactgcccagtccccctgtgtgaaggagcc
agcgcgtgcggggaggatgaggtgtgtgtgaagcctgggttctgccgctgcaagcatggt
tactacggaccgaactgcaagactcgctgtcccaccatgtactggggccccgaatgcaag
gagttctgtgcgtgccacccccacgggcgatgcgaccccgtgactggccagtgcacctgc
aaccccaaccgctggggctccctgtgccagcacccctgccgttgtgggcggcacggccgc
tgtgaccccctccatgggaactgcacctgcgagcctggctggtttgcactggcctgcaac
aagccgtgccagtgccagcctgccagctccacctgtgcccccgccactgggaggtgcctg
tgtcaccagggttactggggcaagaagtgcagcttgctgtgtaactgcccccactccccc
tgtgaccaggacacaggcacctgccagtgcacggctgggtggtgggggcctctctgcgac
cgtctctgtgactgccggcatgggggggtgtgtgaccccaccaccggggggtgcgtctgt
caaccggggtaccagaaccccacctgcagtgaacggtgctccgccggtttctacggcaac
cagtgccagaacaggtgtggccggtgcaggcaggcccagccatgctccccgacggacggg
ttctgtgtggcctgcgagcctggctggaacggcacccgctgcgaccagatctgtccgcac
ggttaccacggggatggctgcaagttggaatgccctcgctgccggaacggggagccctgc
gaccctgtgacaggaaactgctcacactgtgacccgggctggatcggaccaaggtgtgac
tcccagtgtcctgaggggctgtatggagcccactgccggtttgagtgctccccctgtaac
catggacaatgtgatcatgtgacaggaagctgcatctgtgagcctggttaccagggtgac
agctgcaatgctacctgcacaggtgcattctatggagtaaactgctcgaccccgtgtgac
tgctacggagactcctgccacctggtgaccggaggctgccactacaggtcggggggccgt
ggcacgctcatcgctggagtcctcacccccctcctcctcatcctgatgctgctcacctgc
tgctgctgctgtggaggagggagccagcatgagcccaaagacaggctggcggttgctgac
gggggtcccttggctagaatgaagcaccatgtccacggggttctagggaacctgagctca
gcagtcccttgcttctccctggggtcctctaccttgccccgggtcactgtgtcccaccac
gatgctgaggttaccttcaaccacagcttcatcgagcccccctctgcgggctgggcatcc
gagaactccttctcctccttcgacagcgaagacgggggacctgtttactgcctccctccg
aaagaagatatcgccacagtggccggaggggagttccaggaaatgagctccaagtgcaac
atcttccacgatgcctctgccttcaatgcggaggacgtgtctcagcccttcgccatcccc
cgcacctccagcatcgccaaggccaagcggccctctgtctccttcgcagagggcaccaag
ttcggggccaccgagatcccgaacataaacagcaagcccaaaaccccctggggtatcccc
aagctcctcaccatccaatcacagccctctgcaggagaaggagtgggggaggagacagca
cagggcgaggacagccaactgtacgagagcacagaaatcctcagagccaatccggagcag
gcagatgagacagcaagccacctcaaaccagccaggagacggacaatgtccaacggcatg
agagacgccgctgcgcagcagattacagaggagccagtttcagaagagagtggcagccct
gagaaaatctctactgtgtgcgtgatggcggggggagccggatacccctccaagcctcag
gctgagtccagcaaggagggtcctgtccaggcggtcttgaggaggctgggaagccttcag
cagcacaaagatgcagccagcaagcccagaggcaagggggacagtatctccaaaccgccc
aggaggaagctgggagccagggccggcccctggcagcaaggggctgccgactcttcaacc
tccgatgagagtcctatgaagccgactagaacccaggtcaagcctttaaatgccacgggt
tccgcaaccagtgtacaggaggatgctacagaaaatgagccgctgattccctcctcctcc
actctcgggaatggcgtgatgacgtcgggagaggaggcaggaacagggcaggagatggtg
ggcagccagtcatgtgatcagaacccagaaggcggcacagagcaggactatctgggcaca
gccagccaaaatgacagcgaccacgaggcacccaaatatgaaaatgtggcgtgctttaaa
tag
DBGET
integrated database retrieval system
