Polyodon spathula (Mississippi paddlefish): 121308638
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Entry
121308638 CDS
T07273
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1-like
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pspa04040
]
121308638
Ion channels [BR:
pspa04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
121308638
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Ion_trans
Motif
Other DBs
NCBI-GeneID:
121308638
NCBI-ProteinID:
XP_041097088
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All DBs
Position
3:complement(74395030..74434992)
Genome browser
AA seq
1073 aa
AA seq
DB search
MKPDCLRSADSSNSSPLHYAAGGGRIQLIQAIINTTGSEGLNVTDNKGNTPLHLAVKNKQ
LESCRTLLELGADPNILNTNLMSPLHMAINLRHNEIVEVLLSHSSVDMNLEGDLGNTPVM
LACSIDNHEALNLLLTRGARLCEQNKLGHFAIHSAAFSGSKKSMEIILKKGEELGHQTER
HINYVDKSGSSPLHLAVHGGNIEVIQLCIASGAKIDLQQSDKSTALHFACTQGAIEAVKL
MLSTYNGGLDVVNLIDGAHQTLLHKATMFDHVELVEYLLMKGANIDSLDCESHSPLLQAT
TCGAWKTVELLVRKGANVKLKDSCGCNFLHLAVQQPKGLKNISEEILQLKDVKELLNDED
NEGCVPLHYACRLGIQESVTNMLGLKVSLHLKSKDKKSPLHFAAGFGRFNTCHQLLETMR
DSRLLNEGDEKGMTPLHLASQNGHIKVVELLLRKGALFLCDYKGRTCLHYAAVEGYTQTM
KILLEKNINLIDKADEEGNTALHLAAREGHVSSVSLLLSKGAEISLNKSEATFFHEAIHQ
GRNEVASVVIESERCHEAITTYKLGSTKTVPVLEMIEFLPESFKLLLDRCLKESEDDVNS
QDYCVSYNFQYFQCPLTYSKLSKEDKVFNYQPLASLNAMVQFNRVELLTHPVSKKYLEMK
WLAYGLKAHALNLAIYSLGLVPLTILIVNLRPEISVNGTAENGTEVREVTMSSQSLNKYN
YFYTICTILVLVMNLCAVGKEMVQVYQQRWRYLLDYSNYVDWCVAVESLLFVIPLLYNSQ
EHWPWQCGAIAVFHSWINFLFYMQRFERFGIYVVMFGEILQTLLCISLLFFFLNLAFALV
FYALMLEQETFATPARSIMQTFAMMLGDIGYQDNFLTPLIENRLPFPFLTFSILCWFLLL
MPILLINLLIGLAVGDIAEVQRNACLKRIAMQIDLHTNLEEKLPYWFMKRVDQVKVTVYP
NRVCGSKFHAFWNWNGKPESRTRLNTGHSRTTPLEFEVQTQKYRLKDISKVLEKQHNLLK
LIIQKMEIVSEADEQDDTELFQYGNAKRQQLLHNKSKWNSLVKAVHDKKQKSL
NT seq
3222 nt
NT seq
+upstream
nt +downstream
nt
atgaagcctgattgcctgaggagtgcagattcatccaattcaagccctttgcactatgct
gctgggggtggacgtattcagttgatacaagcaatcataaacacaactggctctgaaggt
ttaaacgtaacagataacaaagggaatacacccctgcatttggctgtcaaaaacaaacag
ttagaaagctgtagaacactgctggaattaggagcggacccaaacatcctgaacaccaac
ctaatgtctcctttacacatggctataaacttaagacacaatgagattgttgaggtgtta
ctgtctcacagcagtgtagacatgaacctggaaggagatcttggaaacaccccagtgatg
ttggcttgttctatcgacaatcatgaagcattaaatctcctgctcacacgtggcgcacga
ctgtgcgaacaaaacaagctgggacattttgccattcattcagctgctttttcaggttca
aaaaaatctatggaaataattttaaaaaaaggagaagagttgggccatcaaactgagcgt
catattaactatgtggacaaatccggtagtagcccccttcacttggctgtccatggtggg
aacattgaagtaattcaactatgcatagcaagtggggcaaaaattgatttgcaacagagt
gataaatccactgcacttcatttcgcttgtacgcaaggagccattgaagctgtcaaacta
atgctgtcaacatacaacggaggactggatgtggtcaatcttatcgacggagctcatcag
acacttttgcataaggccacaatgtttgatcacgttgaactggtggaataccttttgatg
aagggtgccaacattgacagccttgactgcgagtcccactcccctcttctacaggctaca
acttgtggagcctggaagacagttgagcttttagtacggaaaggagcaaatgtgaagtta
aaagactcttgtggctgcaacttcctacacttggctgtgcagcagcccaaaggactgaag
aatatatctgaggaaattctacaactcaaggatgtgaaggagcttctaaatgatgaagac
aacgaggggtgtgttccacttcattatgcatgcagactaggaatccaagaatcagtaact
aacatgctggggttgaaggtatccctccatttaaaatcaaaggataagaaatctccactg
catttcgcagctgggtttgggcgtttcaacacttgccaccagttgctggagaccatgaga
gacagcagactacttaatgaaggagatgagaaaggaatgaccccactccatctagcatct
cagaatggacacattaaggttgttgaattgctgctaaggaagggtgctttattcctttgt
gattataaaggccggacatgtttacattatgctgcagtggagggctatactcaaacaatg
aagatacttttggaaaaaaacataaatcttatagataaggctgatgaagaagggaacaca
gcccttcacctagctgcaagggaagggcatgtcagttctgtaagccttctgttgagtaaa
ggagcggagatttcactcaacaaaagtgaggccactttctttcatgaagctatacaccaa
gggagaaatgaagttgcctctgttgtcattgagagtgaaaggtgccatgaagctattaca
acatataaattgggatctacgaaaacagtccctgtattggagatgattgaattccttcca
gaaagcttcaagttgcttttggacagatgtttgaaagaatcagaagatgatgtcaatagt
caagactactgtgtgagttacaatttccaatattttcagtgcccactgacgtattcaaag
ctgtcaaaagaagataaggtgtttaactatcagcctcttgcttcactgaatgccatggta
cagtttaaccgtgttgagcttttgacccaccctgtcagcaagaaatatttagaaatgaaa
tggcttgcctatggactaaaagcccatgctctcaacctggctatctacagtcttggtttg
gtgcctctaacaatcctcattgtgaatctgagaccagaaatatctgtgaatggaacagca
gagaatggaacagaagttagagaggtgaccatgagttctcagtccctgaataagtacaac
tatttttacacaatctgcacgattctggttcttgtcatgaatctatgtgcagttggtaaa
gagatggtccaggtataccagcagcgctggaggtacttacttgactactcaaattatgta
gactggtgtgtagcagtcgagtctcttctgtttgttatcccccttttgtataactctcag
gaacactggccctggcaatgtggggccatcgctgtgtttcattcctggatcaactttctc
ttttatatgcaaaggtttgaacgttttgggatttacgttgtgatgtttggtgagatcctc
caaactcttttatgtattagcctgttgttctttttcttgaatttggccttcgccctggtg
ttttatgctctaatgcttgaacaggaaacatttgcaactcctgcacgttccataatgcag
acttttgctatgatgctgggagatattggttaccaggacaattttcttaccccactcata
gagaatagattaccttttccttttctcaccttttcaattctctgctggtttttactactg
atgccaatcctcctcattaacttgctgattggtttagctgttggagatattgctgaggtc
cagagaaatgcttgcttgaaaaggattgctatgcagattgatctccacactaacttggag
gaaaagctgccatactggtttatgaaacgagtggatcaggtcaaagttacagtatatcct
aacagagtctgtgggtcaaagtttcatgccttctggaactggaatggcaagcctgaatca
agaacccggctgaacacaggccattctcgcacaacgcctctggaatttgaagttcagaca
cagaagtacaggttgaaggatatttcaaaggttttggaaaagcagcacaaccttctgaaa
ctcatcattcaaaaaatggaaatagtgtcagaagctgatgagcaagatgacactgagctt
ttccagtatggcaatgcgaagaggcagcagctgctccacaataagagcaagtggaattct
ttggtaaaagctgtgcatgacaaaaaacaaaagagtctgtaa
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