Polyodon spathula (Mississippi paddlefish): 121308702
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Entry
121308702 CDS
T07273
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121308702 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pspa03041
]
121308702 (prpf8)
Spliceosome [BR:
pspa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
121308702 (prpf8)
Complex C
U5 SnRNP specific factors
121308702 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
121308702
NCBI-ProteinID:
XP_041097202
LinkDB
All DBs
Position
Unknown
AA seq
2334 aa
AA seq
DB search
MAAAFPYRGGPGGIPVPGQMPDFMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKEDM
PPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDIPVLYH
ITGAISFVNEIPWVIEPVYIAQWGAMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADN
ILDVEPLEAIQMELDPDEDAPVTDWLYDHQPLKDNTKFVNGSTYRRWQFTLPMMSTLYRL
ANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDINK
IIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPISH
RHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRRA
IDIPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATKF
FQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFG
NAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLSDGLQYIFAHVGQLTGMYRYKYKLMRQ
IRMCKDLKHLIYYRFNTGPVGKGPGCGFWGPGWRVWLFFMRGITPLLERWLGNLLARQFE
GRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSESWRCWK
ANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLTR
LYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTKLLIL
ALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDL
YSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGINN
LQDVWETMEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYKD
MNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATEG
AHPIRLYCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARMR
LMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKCR
TSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIVN
KWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKE
LGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFID
SQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTD
FKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGL
FWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIF
MHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVFDQELDALEIETVQKETIHPRKSYK
MNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYAR
AKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSGYGNWFPGGKPLIQQAMAKIMKANPALY
VLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTK
PINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQI
IVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLYD
DWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVEV
QLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLTA
TQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKETG
YTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQTVHLPN
QLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPAWDGEKTIIITCSFTPG
SCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQVSWNY
NFMGVRHDPNMKYDLQLSNPKEFYHEVHRPSHFLNFASLQEGEIYNADREDMYG
NT seq
7005 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgcattcccttaccgaggtgggcctggtgggatcccagtgccaggccagatg
ccagattttatgtctgaagaaaaacttcaggaaaaagcccgcaaatggcagcagctgcag
gcaaagcgctatgcggagaagagaaagtttggttttgtggacgcccagaaagaggacatg
cctccagaacacgtccggaagatcatccgtgaccacggggacatgaccaacaggaagttc
cgtcacgacaagagagtttatctgggtgctctgaagtacatgccccatgcagtgctgaaa
ctgctggagaacatgccgatgccctgggagcagatccgagacatcccagtgctctaccac
atcaccggggccatctcctttgtcaacgagattccctgggttattgaaccagtctacatt
gcacagtggggcgccatgtggatcatgatgcgtcgtgagaagagagacaggcgccacttc
aagaggatgcgattccctcccttcgatgacgaggagccgccactggactacgctgacaac
atcctggacgtggagcccctggaggccatccagatggagctggacccagacgaggacgct
cccgtcacagactggctgtacgaccaccagcccctcaaggacaacaccaagtttgtgaac
gggtccacatacaggcgctggcagtttactttgccaatgatgtccacgctgtaccgcctt
gccaatcagctgctgactgacctggtggacgataactacttctacctgtttgacctgaaa
gccttcttcacctccaaggcgctcaacatggccattccagggggtcccaaatttgagccg
ctggtcagagatattaacctgcaggatgaagactggaacgagttcaatgacattaacaag
atcattatcaggcagcctatcagaacggagtacaagattgcatttccttacctgtataac
aacctgccgcaccatgtccatctcacctggtaccacaccccgaatgtggtgttcatcaaa
acagaagaccctgacttgcctgctttctactttgaccccctgatcaaccccatctctcac
agacactcggtcaagagccaggagcccctgcccgatgacgatgaggagtttgagctgcca
gagtttgtggagccgttcttgaaagacacccccctgtacacagacaacacagccaatggc
atcgccctgctgtgggcaccgcgtccctttaacctgcgatcagggagaacgcgcagagcc
attgacatcccgctcattaagaactggtatcgggagcattgccctgcaggtcagcctgtc
aaagtgcgtgtgtcctatcagaagctgctgaagtactacgtgttgaatgctctcaaacac
aggcctcccaaagcccagaagaaaagatatttgttccgctcgttcaaagcgaccaagttc
ttccagtcgacgaagctggactgggtggaggtggggctgcaagtgtgtcgacagggctac
aacatgctcaacctgctgatccacagaaagaacctcaactaccttcacctggactacaac
ttcaacctcaaacctgtcaagactctcaccacaaaggaacgtaaaaagtccagattcgga
aatgcgttccatttgtgcagagaggttctgcgtctcagtaagctggtggtagacagccac
gtgcagtacaggctgggaaacgttgatgccttccagctgtcagatggccttcagtacatt
tttgcccatgtgggccagctgactgggatgtacagatacaagtacaagctgatgaggcag
atccgcatgtgcaaggacctgaagcatctcatctactacaggtttaacaccggtccagtt
ggaaaggggcccggctgtggtttctggggcccagggtggagggtgtggctgttcttcatg
aggggcatcactcctctgctggagaggtggctgggaaacctgctggccagacagttcgaa
gggcgtcactccaagggcgtggcgaagactgtgacgaagcagcgtgtggagtctcacttc
gatttggagctgagagccgctgtcatgcacgacatcctggacatgatgcctgagggaatc
aaacagaacaaggccaggaccatcctgcagcacctcagcgagtcctggaggtgctggaag
gccaacattccctggaaggttcctgggctgcccacccctattgagaacatgatcctccgc
tacgtgaaagcgaaagccgattggtggaccaacactgcccattacaacagagagcgaatc
cgtcgcggcgccactgtagacaagacggtctgtaagaagaacctgggccgcctgactcga
ctctacctgaaggctgaacaggagaggcaacacaactacctgaaggatggtccgtacatt
acagcagaggaggctgttgctatctacaccaccactgtgcactggctggagagcaggagg
ttctctcccattcccttccctccactctcctacaaacatgacaccaagctgctcatcctg
gccctggagaggctgaaggaagcatacagtgtgaaatctcggctgaaccagtctcagaga
gaggagctgggtttgatcgagcaggcttacgacaacccccacgaggcgctatccaggatc
aagcgtcacctcctcacgcagagagccttcaaagaggttggtattgagttcatggacctg
tacagtcacttggtccctgtgtatgacgtggagcccctggagaagatcaccgatgcttac
ctggatcagtacctgtggtatgaagctgacaaacgcagactctttccgccttggatcaag
ccagccgacacagaaccgcctccactgctggtctacaagtggtgccagggcatcaataac
ctgcaggatgtgtgggagacgatggagggggagtgcaacgtgatgttggagtctcgctat
gagaagatgtacgagaagattgatctgacgctgctcaacagactgctgcgtctaattgtt
gaccacaacattgctgattacatgacggccaaaaacaatgtggtcattaactacaaggac
atgaaccacacaaactcgtacggcatcattcgagggctgcagtttgcctccttcattgtt
cagtactatggcttggtgatggatctgctagtgctggggttgcaccgcgccagtgagatg
gcgggccctccacagatgcccaatgacttcctgagcttccaggacattgccactgaggga
gcccaccctatccgcctgtactgcagatacattgaccgcatccatatcttcttcagattt
acagcggatgaggcaagagatctgattcagagatacttgactgagcaccctgaccccaac
aacgagaacattgtgggttacaacaacaagaagtgctggcccagagatgctaggatgagg
ctcatgaagcatgatgtcaacctgggtcgagctgtgttctgggatatcaagaaccggctg
cctcgctctgtgaccacggtccagtgggagaacagttttgtgtctgtgtacagcaaggac
aaccccaacctgctcttcaacatgtgcgggttcgagtgccgcatcctgcccaagtgccgc
accagctacgaagagttcacgcacaaggatggggtctggaatctgcaaaatgaggtgacg
aaggagcgaactgcccagtgtttcttgagagtggatgatgaatctatgcagaggttccac
aaccgggtcaggcagatcctaatggcttctggatccaccaccttcactaagattgtgaac
aagtggaacactgctctgatcggtctcatgacgtatttccgagaggccgtggtaaacaca
caggagctcctggacctgctggtcaaatgtgagaataagatccagacccgaattaagatc
ggactcaactccaagatgcccagtcgattccctccggtcgtcttctacacgcccaaggag
ctgggagggctgggcatgctgtccatgggccacgtcctcatcccccagtccgacctgcgg
tggtcgaagcagactgatgttggcatcacccacttccgctctggaatgagccacgaggag
gaccagctgattcccaatctgtacagatacatccagccctgggagagcgagttcatcgac
tctcagagagtgtgggcagaatacgcattgaagaggcaggaagccattgcgcagaacaga
cgtttaactctggaagacttggaagattcctgggacagaggtatccccagaatcaacact
ctgttccagaaggacagacacacgctggcttatgacaaggggtggcgagtgaggacagac
ttcaaacagtaccaggtgctgaaacaaaatccgttctggtggacccaccagcgtcacgac
ggcaagctgtggaacttgaacaactaccgaaccgacatgatccaagcactgggaggggtg
gagggcatcctggagcacacgctgttcaagggaacctacttccccacctgggagggtctg
ttctgggagaaggcgagtggttttgaggaatccatgaagtggaagaaactgaccaacgct
cagaggtctggtctgaaccagattcctaacagaaggttcactctctggtggtcacccacc
atcaacagggctaacgtgtacgtaggtttccaggtgcagttggatctgaccggtatcttc
atgcacggcaagattcccacactcaagatctccctcatccagatcttcagagctcacttg
tggcagaagatccatgagagcgtcgtcatggacttgtgtcaggtgtttgatcaggagttg
gatgctctggagattgagactgtgcagaaggagaccatccaccccaggaagtcctacaaa
atgaactcctcttgcgcagacatcctgctttttgcctcttacaagtggaacgtctcccgg
ccgtctctgctcgctgactcaaaagacgtgatggacagcaccacgacccagaagtactgg
attgatatccagctgcgttggggagactatgactcccacgacatcgagagatatgccagg
gctaaattcctggactacaccacagacaacatgagtatctacccatccccaaccggagtc
ctcatcgctatcgacctggcttacaacctgcacagtggctacggtaactggttcccagga
gggaagccgctgatccagcaggccatggctaagatcatgaaggcgaacccggctctgtat
gtgttgagggagcgaatccgcaaggggctgcagctctactcttccgagcccactgagccg
tatctgtcctcccagaactacggggagctcttctccaatcagattatctggtttgtggat
gacaccaatgtgtatcgagtaaccatccacaagacctttgaaggcaacttgaccacaaag
cctataaacggagccattttcatcttcaatccccgaactgggcagcttttcctgaagatt
atccacacctctgtgtgggcaggacagaaacgtctcggacagctggccaaatggaagaca
gctgaagaggtagctgccctgatccgatccctgcctgtggaggagcagcccaagcagatt
atcgtcaccagaaagggcatgttggatcccctggaggtccacttgctggatttccccaac
attgtgatcaaggggtctgagctgcagctgcccttccaagcctgtctgaaggtagagaag
tttggagatctaatcctgaaggccactgagccacagatggtgcttttcaacctctacgat
gactggctgaagaccatctcctcttacaccgccttctcccgtctgatcctgattctgagg
gccctacatgtgaataacgaccgcgccaaagtcatcctgaagccggacaagaccaccatc
acggagccccaccacatctggcccacgctgacggatgaggagtggatcaaggtggaggtg
cagctgaaggacctgatcctggcagattacggcaagaagaacaatgtgaacgttgcgtct
ctgactcagtccgagatcagggatatcatcctggggatggagatctctgccccctctcag
cagaggcagcagatcgctgagattgagaagcagaccaaggagcaatcccagctcactgcc
acgcagacccggacagtcaacaagcacggagacgagatcatcacctccactaccagcaac
tacgagacccagaccttctcctccaagacagagtggagagtccgagcgatctctgctgcc
aatctgcacctgcgtacaaatcacatttatgtttcgtcggatgatatcaaggagacgggc
tatacctacattctgcccaagaacgtgctgaagaagtttatctgcatctcggaccttcgt
gctcagattgcaggttacctgtacggcaccagccccccagataacccccaggtgaaggag
attcgctgcatcgtgatggtgccgcagtggggaacccaccagaccgtgcatctccccaac
cagctcccacagcacgagtacctcaaggaaatggagccgctgggctggatccacactcag
ccgaacgagtctccccagctgtcccctcaggacgtcaccacgcacgccaaggtcatggct
gacaacccggcctgggacggggagaagaccatcatcatcacctgcagtttcacccccggc
tcctgcaccctcactgcctacaagctgacccccagcgggtacgagtggggcagacagaac
acagacaaggggaacaaccccaaggggtacctgccctcgcactacgagagggtgcagatg
ctgctgtctgatcgcttccttggcttcttcatggtgcctggccaagtctcctggaactac
aacttcatgggtgttcgccacgatcccaacatgaagtacgatctgcagctgtccaacccc
aaggagttctaccacgaggtgcacaggccctcgcacttcctgaacttcgcctcgctgcag
gagggggagatctacaacgccgaccgggaggacatgtatggttag
DBGET
integrated database retrieval system
