Polyodon spathula (Mississippi paddlefish): 121309088
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Entry
121309088 CDS
T07273
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121309088 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121309088 (xab2)
03041 Spliceosome [BR:
pspa03041
]
121309088 (xab2)
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
121309088 (xab2)
Spliceosome [BR:
pspa03041
]
Complex B
Other components
Prp19-related factors
121309088 (xab2)
Complex C
121309088 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_12
TPR_19
TPR_15
TPR_8
TPR_16
ARM_TT21
TPR_1
RPN7
ARM_TT21_C
PPR
DHR-2_Lobe_A
Motif
Other DBs
NCBI-GeneID:
121309088
NCBI-ProteinID:
XP_041097898
LinkDB
All DBs
Position
Unknown
AA seq
853 aa
AA seq
DB search
MPSLPEKGDVMFEEDDLPYEEEIIRNPYSVKCWMRYIEFKQSAPRNTLNMIFERALKELP
GSYKLWYNYLRQRRKQAKGRCITDQAFEEVNNCHERALVFMHKMPRIWLDFCQFLMDQCK
ITRARRTFDRALRALPVTQHHRIWPLYLKFVRAHPLPETAVRVYRRHLKLCPENAEGYIE
YLRSVDRLDEAAVRLAAIVNDESFISKEGKSNYQLWHEMCDLISQNPDKVKSLSVGAIIR
GGLTRFTDQLGKLWCSLADYYTRSGHFEKARDVYEEAIQTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSEMGQNQDEDIDLELRLARFEQLITRRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGKPREIINTYTEAVQTVDPAKATGKPHSIWVSFAKFYEEHGQLDDARTIFERATKVN
FKQVDGLSSVWCEYGEMELRHENYEQALRILRKATAIPAKKAEYFDTSEPVQNRVYKSLK
VWSMLADLEESLGTFKSTKAVYERIIDLRIATPQVIINYAMFLEEHTYFEDSFKAYERGI
SLFKWPNVHDIWNTYLTKFIERYGGKKLERARDLFEQALDGCPPRYAKTIYLLYAKLEEE
FGLARHAMAVYERATQAVEPAEQHEMFNIYIKRAAEIYGVMHTRGIYQRAIEVLPDEHSR
EMCLRFADMEAKLGEIDRARAIYSYCSQICDPRMTAAFWQTWKEFEIRHGNEDTIREMLR
IKRSIQATYNTQVNFMSSQMLKASSNATGTVSDLAPGQGSMDDMKLLEQKAHLLAAEAER
EKVKPKEKILFVRSDTSHSELAELAKQANPDEIDIDDDDEDGEGDDDEDNGPEEVQLEQK
SVPAAVFGGLRDD
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcgttaccggagaaaggggatgtcatgtttgaggaagatgacctcccgtacgag
gaggagatcattcggaacccctactccgtcaagtgctggatgcgctacatcgagttcaag
cagagcgcccccagaaacaccctcaacatgatcttcgagagggcgctcaaggagctgccg
ggcagttacaagctgtggtacaactacctgaggcagaggaggaagcaggcgaaggggagg
tgcatcacagaccaggccttcgaggaggtgaacaactgccatgagcgagcgctggtcttc
atgcacaagatgccgcggatctggctggatttctgccagttcctgatggatcagtgtaag
atcacgcgggcgcggcgcaccttcgaccgggccctgcgcgccctgcccgtcacgcagcac
catcgcatctggccgctctacctgaagttcgtccgcgcgcaccccctgcccgagaccgct
gtcagggtctaccgccggcacctcaagctgtgccctgagaatgcggaggggtacatcgag
tacctgcgctctgtggaccggctggacgaggctgcagtccggcttgctgccattgtcaat
gacgagtccttcatctccaaagagggcaagtccaactaccagctttggcacgagatgtgt
gacctgatctctcagaacccagacaaggtgaagtctctgagcgtgggggccatcatcagg
ggggggctgacccgcttcactgaccagctgggcaagctctggtgctccctggctgactac
tacacccgcagcggccacttcgagaaggctcgtgatgtgtatgaggaggctatacagacc
gtggtgactgtgcgggacttcacccaggtctttgacagctacgctcagtttgaggagagc
atgatcgctgccaagatggagaccacttctgagatgggtcagaaccaggacgaggacatt
gacctggagctccggctcgctcgattcgagcagctgatcacccggcgccccctgctgctg
aacagcgtgctactgcgccagaatccacacaacgtccacgagtggcacaagagggtgaag
ctgtacgaggggaagccacgagagatcatcaacacctacactgaggctgtgcagacggtg
gaccctgccaaggcgaccgggaagccccactccatctgggtatccttcgccaagttctac
gaggagcacgggcagctggatgacgctcgcaccatctttgagagagccaccaaggtgaac
ttcaagcaggtggacggcctgtccagcgtgtggtgtgagtatggagagatggagctgcgg
cacgagaactacgagcaggctctgaggatcctgaggaaagccactgcaatcccagctaag
aaagctgaatactttgatacctcggagcccgtgcagaaccgcgtgtacaaatccctgaag
gtgtggtccatgttagcagacctggaggagagcctgggcacattcaagtcgacgaaggcg
gtgtacgagcggattattgacctccgcatcgccaccccgcaggtcatcatcaattatgcc
atgttcctggaggagcacacctatttcgaggacagcttcaaggcctatgaaagaggcatc
tctctgtttaagtggcccaacgtacatgacatttggaacacctacctgaccaagtttata
gaacgatacgggggcaagaaactggagcgagcccgggacctgtttgagcaagccctcgac
ggctgcccacccagatacgcaaagacgatctacctgctgtatgctaagctggaggaggag
tttgggctggcgcgccacgcaatggcagtgtacgagcgtgccacgcaggccgttgagcca
gcggagcagcacgagatgttcaacatctacatcaagagagccgctgagatctacggagtg
atgcataccagaggcatctaccagagagccatcgaggtcctcccggacgagcactctcga
gagatgtgcctgcgcttcgctgacatggaggccaagctgggggagatcgaccgagcccgg
gccatctactcctactgctcccagatctgtgaccccaggatgacggcagcgttctggcag
acgtggaaggagtttgagatccgccacgggaatgaggacacgatccgcgagatgctgagg
atcaagcgcagcatccaggccacctacaacacccaggtcaacttcatgtcatcacagatg
ctcaaagcatcctccaacgccaccggcacagtatcggacctggctccaggacagggttcg
atggatgacatgaagcttctggagcagaaagctcacctcctggctgctgaggctgaaagg
gagaaagtcaaacccaaggagaagatcctgtttgtcaggagtgacacgtctcacagtgag
ctggctgaactggccaagcaggcgaatccagacgagatcgacattgacgatgatgacgag
gatggagagggagatgatgatgaagacaatggacctgaggaggtgcagctggagcagaag
agtgttcctgcagccgtgttcggggggctccgggatgactga
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integrated database retrieval system
