Polyodon spathula (Mississippi paddlefish): 121309151
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Entry
121309151 CDS
T07273
Name
(RefSeq) transcription activator BRG1 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121309151
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121309151
03036 Chromosome and associated proteins [BR:
pspa03036
]
121309151
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
121309151
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
121309151
Chromatin remodeling factors
BAF complex
121309151
PBAF complex
121309151
GBAF(ncBAF) complex
121309151
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
HSA
Bromodomain
BRK
QLQ
ResIII
HDA2-3
DEAD
DUF2009
Motif
Other DBs
NCBI-GeneID:
121309151
NCBI-ProteinID:
XP_041097992
LinkDB
All DBs
Position
Unknown
AA seq
1622 aa
AA seq
DB search
MSTPDPPMGSTPRPGPSPGPGPSPGAMMGPSPGPSPGSAHSMMGPSPGPPPAGHPQGPSA
YPQENMHQMHKPMDSMHEKVLPDDPRYSQMKVMGMRPGPHSGMGPPPSPMDQHSQGYPSP
LGGSEHAPSPVPANGPPSGPLMPQGPGGAPLDGVDPQNMGQQNRGGPTPFNQNQLHQLRA
QIMAYKMLARGQQLPDHLQMAVQGKRPMPGMQSQMPSLPPPSVPGAGPGQGPGPTPSNYN
RPHAGMVGPNMPPPGPSGLPPGMQGQPLNGPPKPWAEGPMVNAAAPTSTPQKLIPPQPTG
RPSPAPPSVPPAASPVMPPQTQSPGQPVQPPSMVQLHQKQNRITPIQKPRGLDPVEILQE
REYRLQARIAHRILELENLPGSLAGDLRTKATIELKALRLLSFQRQLRQDVVVCMRRDTA
LETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEY
HRSITGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKR
LAYLLQQTDEYVANLTELVRAHKAAQVLKDKKKKKKKKKVEVPEGQTAALGPDGEPLDET
SQMSDLPVKVIHVDSGKILTGADAPKAGQLDAWLEMNPGYEVALRSDSEDSGSEEEEEEE
EEEQPPPQPSQSAVEEKKISDPDCEEVSEVYVRHILDNAKQDVDDEYGSAAFARGLQSYY
AVAHAVTERVDKQSSLLVNGQLKQYQVKGLEWLVSLYNNNLNGILADEMGLGKTIQTIAL
ITYLMENKRINGPFLIIVPLSTLSNWVYEFDKWGPSVVKVSYKGSPAARRAFVPQLRSGK
FNVLLTTYEYIIKDKQILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYLAPRRLLLTGT
PLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVL
RPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGT
KTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFSGGIVQGPDLYRASGKFEVLDRILPKL
RATNHKVLLFCQMTSLMTIMEDYFAYRNFKYLRLDGTTKAEDRGMLLKTFNDPSSQYFVF
LLSTRAGGLGLNLQSADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEE
KILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEVGSQGVWRSGGVWE
EDEVPDDETVNQMIARSEEEFDHFMRMDMDRRREEARNPKRKPRLMEEDELPTWIMKDDA
EVERLTCEEEEEKMFGRGSRQRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRHKKTTRK
RKRDPDLAAPPAPAPTPTTSTRSREKDEDSKKQKKRGRPPAEKLAPNPPNLTKKMKKIVE
AVIKYKESNNGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLSDLEK
DVMLLCQNAQTFNLEGSLNEQIYEDSIVLQSVFTSVRQKIEKEEESDGEDSEEEEEVEDE
GSESESRSVKVKIKLGRKEKSQERGKGRRRPSRGSRARPVVSDDDSEEEQEEERSASGSE
DD
NT seq
4869 nt
NT seq
+upstream
nt +downstream
nt
atgtcgactccggaccccccaatgggaagcaccccccggcctggcccctcccctgggcct
ggcccctccccgggtgccatgatgggtcccagccccggcccttctccgggctccgcgcac
agcatgatgggtcccagcccggggcccccacccgcagggcacccccagggcccttccgcg
taccctcaggagaacatgcatcagatgcacaagccgatggactccatgcacgagaaggtc
ctgcctgacgaccctcgctacagccagatgaaggtaatggggatgaggccgggccctcac
agcgggatggggccccctccaagccccatggaccagcactcgcaaggctacccctcccct
ctcggaggatccgagcatgcccccagccccgtacccgccaacgggcccccatcgggcccc
ctgatgccccagggcccgggtggggctcccctggatggagtagacccccagaacatgggc
cagcagaaccgaggcggcccgaccccgttcaaccagaaccagctgcaccagctccgcgcc
cagatcatggcttacaagatgctggcacgcgggcagcagctgcctgatcacctccagatg
gcagtccaggggaagaggcccatgccggggatgcagtcgcagatgccaagcctacctcct
cccagcgttcctggggctggacctgggcaagggcctggccccaccccctccaactacaac
agacctcacgcaggaatggttggacccaacatgcctcctccgggaccctctgggctcccc
ccagggatgcagggccagcccctcaatggaccccccaaaccctgggcagaaggacccatg
gtgaacgctgcagccccgaccagcacccctcagaagctgatccctccccagccgacaggc
cgcccctctcccgctcccccctccgtaccacctgctgcctcccccgtcatgccccctcag
acccagtcccccggccagccggtccagcccccgtccatggtgcagctgcaccagaaacag
aaccgcattactcccatccagaaaccccggggcctggaccctgtggagatcctgcaggag
cgggagtacaggctgcaggcgcgcattgcacaccggattctggaactggaaaacctccca
ggatcgctggcaggagacctgaggaccaaagcaaccatcgaactgaaagcactgaggctg
ctcagctttcagagacagttgcgacaggacgtggtggtgtgcatgcgcagagacactgcc
ttggagaccgcgctcaacgccaaggcttacaagcgcagcaagaggcagagcctccgcgag
gcgcgcatcacagagaaactggagaagcagcagaagattgagcaggagcgcaaacgcagg
cagaagcaccaggaatatctcaacagcattctccagcacgccaaggatttcaaagagtac
caccgctccatcaccggcaagatccagaagctgaccaaagccgtggccacgtaccacgcc
aacacggagcgcgagcagaagaaggagaacgagcggatcgagaaggagaggatgaggagg
ctgatggctgaggatgaggagggctaccggaagctgattgaccagaagaaggacaagcgc
ctggcttacctgctccagcagactgacgagtacgtggcgaacctgacagagctcgtgcgc
gcgcacaaggccgcccaggtgctcaaggacaagaagaagaagaagaaaaagaagaaggta
gaagtcccagaaggtcagactgcagctctgggtccagacggggagcctctggacgaaacc
agtcaaatgagtgacctcccagtgaaggttatccatgtggacagtggcaagatcctgacg
ggcgccgacgcccccaaagctggacagctggatgcctggctggagatgaatccgggctac
gaagttgctctgaggtccgacagcgaggacagcggctccgaagaggaggaggaggaggaa
gaggaggaacagcctcctccacagcccagccagtccgctgtggaagagaagaagatctca
gacccagactgtgaggaagtgtccgaggtctacgtcaggcacatcctcgacaatgccaag
caggatgtggacgatgagtacggctctgccgctttcgcccgcgggctgcagtcttactac
gctgtcgctcacgccgtcaccgagagagtggacaagcagtcttcactcctcgtcaacgga
cagctcaagcagtaccaggtgaagggtctggagtggctggtgtctctctacaacaacaac
ctcaacggcatcctggctgacgagatgggcctggggaagacgatccagaccatcgcttta
atcacttacctcatggagaacaagcgcatcaacgggcccttcctgatcatcgtacctctc
tcaacgctctcgaactgggtttatgagtttgataagtggggcccctcggtggtgaaggtc
tcctacaagggctccccggctgcgaggagagccttcgtccctcagcttcgcagcgggaag
ttcaacgtgctcctcaccacttacgagtatatcatcaaggacaagcaaatcctagccaag
atccgctggaagtacatgatcgtggacgagggtcaccgcatgaagaaccaccactgcaag
ctgacccaggtcctcaacactcactacctggctccccggcgcctcctgctgaccggcacc
ccactgcagaacaagctgcccgagctctgggctctgctcaacttcctcctgcccaccatc
ttcaagagctgcagcacgttcgagcagtggttcaatgcccccttcgccatgaccggagaa
aaggtggatctgaatgaagaggagaccatcctgattattcgccgtctccacaaggtgttg
cgccccttcctgctgcgcaggcttaagaaggaggtggaggcacagctccctgagaaggtg
gagtacgtgattaagtgtgacatgtcagcgttgcagagagtcctctacagacacatgcag
gccaagggcgtgctgctgaccgatggctccgagaaggacaagaaggggaagggtgggacg
aagaccctgatgaacaccatcatgcagctgaggaagatctgtaatcacccgtacatgttc
cagcacattgaggaatccttctccgagcacttgggcttcagtggtggaattgtgcaggga
cccgatctgtaccgtgcctcaggcaagttcgaggtgctggaccgcatcctcccgaaacta
cgagccaccaatcacaaggtgctgctgttctgtcagatgacctcgctgatgaccatcatg
gaagactacttcgcttaccgcaactttaaatacctcagactggatggaaccactaaagct
gaagatcgtgggatgctgctgaagaccttcaacgaccccagctcccagtacttcgtgttc
ctgctcagcactcgcgccggagggctggggctcaatctgcagtctgccgacacggtcgtc
atcttcgacagcgactggaacccccaccaggatctccaggcccaggaccgcgctcaccgc
atcgggcagcagaacgaggtgcgagtcctgcgcctgtgcacggtcaacagtgtggaggag
aagatcctggccgcagccaagtacaagctgaacgtggaccagaaagtcatccaggcgggc
atgttcgaccagaaatccagcagccacgagcggcgcgccttcctgcaggccatcctggag
cacgaggagcaggacgaggtcgggagccagggggtgtggcgctccgggggggtgtgggaa
gaggacgaggtcccggatgacgagactgtgaaccagatgattgcacgcagcgaggaggag
ttcgatcacttcatgcgcatggacatggaccggcgacgcgaggaggcccgtaacccgaaa
cgcaagccccgtctgatggaggaggacgagctgcccacctggatcatgaaggacgacgcg
gaggtggagcggctgacctgcgaggaggaggaggagaagatgttcggccgcggctcccgg
caacgcaaggaggtcgactacagcgactcgctgaccgagaagcagtggctcaaggcgatc
gaggaaggaacgctggaggagatcgaggaggaggtgcggcacaagaagacgacccggaag
aggaagcgcgacccggacctggcagcgccccccgcgcccgcccccacccccaccacgagc
acccgcagccgcgagaaggacgaggacagcaagaagcagaaaaagcgtgggcgcccccct
gcggagaagctcgccccgaacccgcccaaccttaccaagaagatgaagaagatcgtggag
gcggtcatcaagtacaaggagagcaacaacggacggcagctgagcgaggtcttcatccag
ctcccgtcacgcaaagagctgccagaatactacgagctgatccgcaaacccgtggacttc
aagaagatcaaggagcgaatccggaatcacaagtaccgcagcctcagtgacctggagaag
gacgtcatgctgctgtgtcagaacgcacagaccttcaacctggaggggtcgctgaatgaa
cagatctacgaagactccatcgtgctgcagtccgtgttcaccagcgtgcgccagaagatc
gagaaagaggaggagagcgacggggaggacagcgaggaggaggaagaggtggaggatgaa
ggatcggagtccgagtcccgttctgtgaaggtcaagatcaagctgggccgcaaggagaag
agccaggagaggggcaaaggccggcgccgcccgagccgggggtccagagccaggccggtg
gtcagcgacgacgacagcgaggaggagcaggaggaggagcgctctgccagcggcagtgaa
gatgattga
DBGET
integrated database retrieval system
