Polyodon spathula (Mississippi paddlefish): 121309332
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Entry
121309332 CDS
T07273
Symbol
tnrc6b
Name
(RefSeq) trinucleotide repeat-containing gene 6B protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121309332 (tnrc6b)
03036 Chromosome and associated proteins [BR:
pspa03036
]
121309332 (tnrc6b)
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121309332 (tnrc6b)
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Gene silencing
piRNA pathway
121309332 (tnrc6b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
RRM_occluded
RRM_1
Motif
Other DBs
NCBI-GeneID:
121309332
NCBI-ProteinID:
XP_041098140
LinkDB
All DBs
Position
Unknown
AA seq
1929 aa
AA seq
DB search
MRNSHRRTGAQAIEREKQPCREQQFMEDKKRKKDDKKKKEAAQKVAEQKTKVPEVTKPGP
AQPPAASPVGSSPAPPANGGNNAKRVAVPNGQPPSASAQRYMPREVPPRFRCQQDHKVLL
KRGQPPPPSCILLGGGGQAPLTHPQSSATNQGDSGVHTDSGSSSSSSSSSSSASTNYANS
TWGVGGAGLAPPQGWDKVIVDGSDLEEWPSIAGKEAEGAGSGVAAPSESSSAVDSSSNPS
ASSALQQQQQQPPQGTANSSSAVGNNECAQGSGSAGVWTLATAGVGSGSGVGGAKTKPAQ
SSSPLPAADTGGSGGIGSWKGSGGANFNPNSNPSAWPALVQEGPGGGGPAQLRKGEPEEV
RLASSNSPPMTSSYSSTPSSSSSSSSSSSSNANSVSRLHHHQTSTRDRQKMEESLGWGVG
QEQQQAVGPKINPGNGAGCGEEGSRGLGGDSTTGLDESSWRSQPKPGGLRTDPWDSRGGI
GTTTTTTASTSSSWGNGNQDSGKGGKTWGSGTGEGGKNTGGVTQGVWGGAAVAGEDLSVG
EWGAGGPNSGSPSVVTNNTTTTTTIPSTAGAWDNQKGLQVEDGPGSTPSCWGMASSSAGS
EGGGQGSTGSNPRSGGGGAGSGGHPSSSRGGGGRLHHPRNLLSDPEVALQTMLSRTDLDP
RVLSNSGWGQTQIRQNVEWDYEESRSGGGGCNAANLISAPSAGDGRKGGSGSSRGTEGWE
SAPVGSLTGNPANNSSAASVSANAAVKNNHPTMTTMTSSSVANNTAIQAKNSGGNCGGWG
GEPLPPGQSSDQAKGWGEGEWRDRRGGGNQGGWGDYNKPTPQQPPPLAASWGGGGNPGPG
RGSQEDKSVPAAPSPSSWKDGGKDAGWGRQAGSGSGWISAGKNNGWGEPDLAANKTGWGG
GHGKMGLGGVGEAEMGAWSGGGGGSSNSGWEDPPGRGWGEPGAKQGGGWGKQQQQQPQPL
QQAPPHHIQQQQQDTALQGSWGQSGGRPTQNWTAGPAPPTGPGEEEQSGWEEPSPQTISR
TVDIDDGTSVWGDPGSYNYKSVNLWDKNSAAPPQQQQQQKTGGAPQPTRDLNPGPGGPPA
VGKTPSSVWNSGAPSGPPVDNGTAAWCKPSEGSSGWGDPEDSGKAQSGWGNPSPNPIRPG
SKSMQEGWGEGESLVTAKRHSSWEEDEEGVWNSAGSQGTNAGWGQGGGAGGKKINIKVQL
QPLPSFNGPLKGGSGEPWMNPLSKQFSNMGLLSQADDPAGSKMDLSVGGPLQDKKLEAEK
RGMNLGDYNGELRKGRQVFRPPNSKDMGPGDSGPYYDKLTLPFSNQDGCLGDDGPCSPFS
PPPNYKHSPSGGSGLGFNPQHFSPAATARQAGNHGVFGGGSGMAQSRGLHPASVPPINPS
AGLRAQVPPQFLSPQVSASMLKQLPQNSGLNTGLFNMAPQLSPQQIAMLSQLPQIPQFQL
ACQLLLQQQQQQQQQQQQQLLQNQRKFPQNVRQQPDAQQLARMMNALQQHQRQQQSAGGM
KHSPSHLGMPKQHLDNLVHSGMQDLHPKGQVAGGYSGFGSSASLGGLDFNSMVGGGKESG
SQQSRFKQWTSMMDGLSPTASPPEPPMHKNGAFVPPGKVRGSSPYSQYDMLGSDSLGGHS
AGDSWLPPRSTTTKMGNKPSHASWPPEFQPGVPWKGIQSVDPESDPYMTPGSVLGGSGVS
PIIDTDHQLLRDNAGSNPSLNTSLPSPGAWPYCASDSSSFSHVHSTSAKHSEYKSSWPPD
PIGHSKLWKSSRNTTALPRPPPGLTNQKQPSASPWTGGAPRLARGWGGGSQDSRYVGGST
WSDSGVARTSCWLVLSNLTPQIDGSTLRTICMQHGPLLTFHLNLTQGSALIRYSSKQEAA
KAQTALHMCVLGNTTILAEFVSEEEVSRYFAHSQGGVTGGAQNTSVSASVSSSSGGGGGG
GGGGGRACQ
NT seq
5790 nt
NT seq
+upstream
nt +downstream
nt
atgagaaactcacacaggaggacgggggcccaggctatagaaagagagaaacagccgtgc
agggagcagcagttcatggaagacaagaaaaggaagaaagacgataagaagaagaaagaa
gccgctcagaaggttgcagaacaaaaaaccaaagtgcccgaggtgacaaagccgggcccc
gcccagccgccggccgccagccctgttggcagcagccccgcgccacccgccaacggtggc
aacaatgccaagagggtggcggtgccgaacggacagccgcccagcgcctcggcgcagcgc
tacatgcccagggaggtgcccccgagattccgctgccagcaggaccacaaagtcctgctg
aagcgcggccagccccctcccccgtcctgcattctcctggggggtggggggcaggctccc
ctcacccacccccaatcctccgcaaccaaccaaggggacagtggagtccacacagattcc
ggctcctcttcctcctcctcctcctcctcctcctctgcttctacaaattatgcaaattcc
acgtggggggtggggggggcgggccttgccccccctcaaggctgggacaaggtgatcgta
gacgggtctgacctggaggagtggccgagcatcgccggcaaggaagcagagggcgcaggc
agcggggtggcagcgccttcagagagcagcagtgctgtggacagcagcagcaaccccagt
gcctcaagtgccctccagcagcagcagcagcagccaccacaagggacagccaattccagt
tctgcggtgggaaataatgaatgtgcgcagggcagcggtagtgcaggggtctggaccctg
gctactgctggtgttgggagtggcagtggtgtcggcggggcaaagaccaaacccgctcaa
tcttccagtcctttgccagcagctgacactggtggtagtggtgggattggcagttggaaa
ggctcaggcggtgccaactttaacccaaatagcaacccctcggcctggcccgccctggtc
caggagggtcccggtggcggggggccagcacagctgaggaaaggagagccagaggaggtg
aggttggcttccagcaactcccctccgatgacgtcctcttactctagtaccccgtcctcg
tcctcgtcctcctcctcctcttcgtcttctaatgctaattctgtgagccgcctccaccac
catcagacctcgaccagggatcggcagaaaatggaagagtccctgggatggggtgtgggc
caggagcagcagcaggctgtcggaccaaaaataaacccaggcaacggggccggctgtgga
gaggaaggtagcaggggcctcgggggtgactcaacgacaggtttggatgaatcctcctgg
agatctcagccaaagccggggggtttaaggactgatccttgggacagccgaggtggaatc
ggcactacaactaccacgactgcttctacttcttcatcttggggtaacgggaatcaggac
agtgggaagggtggtaaaacatggggtagcggcacaggggagggagggaaaaataccggt
ggggtaactcagggagtgtggggcggagccgctgtggcgggagaggacctttcagtcggg
gaatggggcgcgggagggccgaacagtggcagcccatctgtagtcacgaacaacaccacc
accaccaccaccatccccagcactgctggagcatgggacaatcagaagggactacaggtg
gaagatgggccagggagtaccccctcctgctggggaatggcttccagctcggccgggagt
gaaggcggagggcagggcagcactggaagcaacccccggtctggaggaggcggtgccggc
agtgggggtcacccctcttcctcgagggggggtggcggcaggttgcatcacccaaggaat
ctgctatccgacccggaagtggccttacagaccatgctgagcaggactgatttggatcct
cgagttctgtccaactcgggctggggccaaacccaaatcaggcagaatgtggagtgggac
tacgaggagtccagaagtggcggcggggggtgtaacgctgctaatctgattagtgccccc
tctgcaggggacggcaggaaggggggtagtggcagcagcagagggacggaaggctgggag
agcgctcctgttggttcgttgacgggtaaccctgccaataacagcagtgctgcttctgtt
tctgcgaacgctgctgtcaaaaacaaccaccccaccatgactactatgacttcttcttct
gtcgccaacaacacagccatccaggcgaagaactcagggggcaattgtggaggctgggga
ggagagcccctccctcctggccaaagcagtgatcaagccaagggctggggggagggagag
tggagggacaggagaggaggaggcaaccaagggggctggggtgactacaataaacctact
ccgcagcagcctcctcctttagcagcaagctgggggggaggtggcaaccccgggccaggc
agagggagccaggaggacaagagcgtacctgcagccccctccccttcgtcctggaaggac
gggggcaaggatgccggatgggggaggcaagcgggaagcggctctggctggatttctgct
ggtaaaaacaacggttggggagaacccgacctggcagccaacaaaacgggttggggaggg
gggcatggaaaaatgggtttgggaggagtaggagaggcagagatgggggcttggagtgga
gggggcggtggcagctcgaattcaggttgggaagaccctccgggaagaggatggggggaa
cctggtgcgaagcagggaggtggttggggtaagcagcagcagcagcagccacagccacta
caacaagctcccccacatcacattcagcaacagcagcaggacaccgccctccaggggtct
tggggtcaaagcggggggcggcccacccagaactggactgcaggtcccgcaccccccact
ggccctggggaggaggagcagagcggctgggaggaaccgtccccccagaccatcagccgg
acggtggacattgacgacggcacctcggtttggggggaccccggcagctacaactacaag
agcgtgaacctctgggacaagaatagtgcagctccaccgcagcagcagcagcagcagaaa
actggaggtgctcctcagccaaccagggacttgaacccgggacctggaggccccccagca
gtgggaaagacacccagctcagtatggaacagcggtgccccctctggtccgccggtggat
aacggcacagctgcctggtgcaagcccagtgaaggcagctcaggctggggagatcccgag
gattctgggaaggctcagtcagggtgggggaacccctctcccaaccccatcagacctggt
tcgaaatctatgcaagagggctggggcgagggtgagagcctggtgacggcaaagcggcac
tccagctgggaggaggatgaggagggggtgtggaacagtgctgggtcccagggcacgaac
gctggctggggccagggaggaggggcagggggcaagaagatcaacattaaggtacagctg
caaccgctgccttctttcaatggtcctttgaaaggaggcagtggtgaaccttggatgaac
cctctgtccaagcagttctcaaacatggggctcctgagccaagctgatgatcctgcaggc
agtaagatggatttgtcagttggaggccccctgcaggataagaagctggaggctgagaag
cgagggatgaatctgggcgactacaacggagagctgaggaaggggagacaggtcttccgc
ccgcccaattccaaagacatgggaccgggggactccgggccctactacgacaagctgacc
ttgcctttctccaatcaggatgggtgcctcggggatgacggcccctgctcccccttctct
cctccccccaactacaagcactccccatcggggggctcaggactcgggttcaacccccag
cacttcagccctgctgctactgctcgacaagctggcaatcatggagtgtttggtggtggc
agcggcatggcacagtcgcgtggcctgcacccggcgtcggtgccacccatcaacccttcc
gccgggctgcgagcgcaagtgcctccccagttcctgtcccctcaggtgtccgcgtccatg
ctgaagcagcttcctcagaacagcggcttgaacacggggctgttcaatatggccccccag
ctctccccacagcaaatcgcaatgctgagccagctgcctcagataccacagttccagctg
gcttgtcagcttctcctgcaacagcagcagcagcagcagcagcagcagcagcagcagctc
ttgcagaaccagaggaaattcccccagaacgtgaggcagcaaccagacgcacagcagctg
gcccgcatgatgaatgctcttcagcagcaccagaggcagcagcagtctgcgggagggatg
aagcactctccctctcacctggggatgcccaaacagcacctggacaacctggtgcactcc
ggcatgcaggacctgcatcccaaaggacaggtggcaggagggtactctgggtttggctcc
agtgcgagcctcggtggcctggacttcaactccatggtggggggtggcaaggagtctggc
tctcagcagtctcgcttcaagcagtggacgtccatgatggacgggctgtcccccacagcg
tccccgccagagccccccatgcacaagaacggtgcttttgtacctccagggaaggtgcga
ggcagctccccctactcccagtatgacatgctgggttcagattcactgggcgggcacagc
gctggggacagctggctcccaccccgctccaccaccaccaagatggggaataaacccagc
cacgccagctggccaccggagttccagccgggagtgccatggaaagggattcagagcgtg
gacccggagtctgacccttacatgacccccgggagcgtgctgggcggctcgggcgtgtct
cccatcatcgacaccgaccatcagctcctcagagacaacgcaggttctaacccttctctg
aacacctcgctgccttcacccggtgcctggccctactgtgcctccgacagctcctccttc
tcacacgtgcacagcacttcagcgaagcacagcgagtacaagtccagctggccccctgac
cccatcggacacagcaagctctggaagagctcccgcaacactacagcactgccccgcccc
cctcctgggctcaccaatcaaaaacaaccctctgcctccccctggactgggggagctcct
cgattggctcgaggctggggaggcggcagtcaggactccagatatgtgggaggttcaacg
tggagtgacagtggggtggcccggactagctgctggctggtgcttagtaaccttactccg
cagatcgacggctcgaccctgcgtacgatctgcatgcagcatggccccctgctcacattc
cacctgaacctgacgcagggcagcgctctgatccgctacagcagcaagcaagaggcggcc
aaggcacagactgcactgcacatgtgcgtgctggggaacaccaccatcctggcggagttt
gtgagtgaggaggaggtcagccgctattttgcacattcccagggcggagtcacgggcgga
gctcagaacacctcagtgtcagcgtctgtgtcgagcagctcgggaggaggaggaggagga
ggaggagggggggggcgagcgtgccagtga
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integrated database retrieval system
