Polyodon spathula (Mississippi paddlefish): 121309355
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Entry
121309355 CDS
T07273
Name
(RefSeq) probable ATP-dependent RNA helicase DDX17
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121309355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pspa03041
]
121309355
03009 Ribosome biogenesis [BR:
pspa03009
]
121309355
Enzymes [BR:
pspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121309355
Spliceosome [BR:
pspa03041
]
Complex A
U1 snRNP components
U1 related factors
121309355
Complex B
121309355
Ribosome biogenesis [BR:
pspa03009
]
Eukaryotic type
Pre-60S particles
Helicases
121309355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Motif
Other DBs
NCBI-GeneID:
121309355
NCBI-ProteinID:
XP_041098167
LinkDB
All DBs
Position
Unknown
AA seq
179 aa
AA seq
DB search
MRGGCWDSRDRGRDRGGSRFGSSRGGPSPQKFGNPGERLRKKKWNLDELPKFEKNFYKEH
PEVERMSQYEVEEFRKKKEITVRGSGCPKPVPKFHQAHFPQYVMDVLVEQSFSEPTAIQA
QGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPIVSVLSWGEGVGL
NT seq
538 nt
NT seq
+upstream
nt +downstream
nt
atgagaggcggctgttgggactccagggatcgcgggcgagacagaggcggctctcgtttc
gggtccagccgcggcgggccctctccccagaagtttgggaacccgggagagcgactgcgt
aagaaaaagtggaacctggacgagcttcccaaattcgagaagaacttctacaaagaacac
cccgaggtggagcgcatgtcccagtatgaggtggaggagtttcgcaagaagaaggagatc
actgttcggggatccggctgtcccaaaccagtgcctaaattccatcaggcacacttccct
cagtatgttatggatgtgctcgtggagcagagtttctcagagcccactgccatccaggct
cagggcttcccgctggcgctgagcggcagggacatggtgggcatcgcacagactggctcg
gggaagacactggcgtacctcctgccggctatagttcacatcaaccaccagccatacctg
gagagaggggacgggcccattgtaagtgtcctgagctggggggagggggtgggtctta
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