KEGG   Polyodon spathula (Mississippi paddlefish): 121309458
Entry
121309458         CDS       T07273                                 
Name
(RefSeq) rho guanine nucleotide exchange factor 12-like isoform X1
  KO
K07532  Rho guanine nucleotide exchange factor 12
Organism
pspa  Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04270  Vascular smooth muscle contraction
pspa04625  C-type lectin receptor signaling pathway
pspa04810  Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:pspa00001]
 09140 Cellular Processes
  09142 Cell motility
   04810 Regulation of actin cytoskeleton
    121309458
 09150 Organismal Systems
  09151 Immune system
   04625 C-type lectin receptor signaling pathway
    121309458
  09153 Circulatory system
   04270 Vascular smooth muscle contraction
    121309458
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pspa04131]
    121309458
Membrane trafficking [BR:pspa04131]
 Others
  Rho GTPase associated proteins
   Rho guanine nucleotide exchange factors (GEFs)
    121309458
SSDB
Motif
Pfam: RGS-like PH_16 RhoGEF PH_13 PDZ PDZ_6 SOS1_NGEF_PH
Other DBs
NCBI-GeneID: 121309458
NCBI-ProteinID: XP_041098325
LinkDB
Position
Unknown
AA seq 1399 aa
MRAGVQTGDRIIKVNGTLVTHSNHVEVVKLIKSGSYVALTVLGRPPGLPHIPLSESESDA
GALTSPTSPGQTAVDRAPSITAPQPVWQENNSVHNQKVDILQKMLSKEVQDLQAMKEEYS
RSPTPKLQKEIQEAKKHIPQLQEQLSKATGGAQDGVQSSRPPSESLQISEVEDTSDGDQT
LSPRMDGSGTDTRPNSGAVDVTSNLSSVFTDSHCQRDTPSHSPKTAPKDGVNSFETTLTE
DTPDQNSHSQSIVGSPSPRLGTQIIGAEDDYFDTEQEQMNGQCSCFQSMELLKSRPAHLA
AFLHHVVSQFDPAPLLCYLYADLYKQTNSKETRRIFMDFNTFFMDRGANLKVAVPEGISS
ELERRRPEFIPEELHRQYVQLMQDTLLTDIQKNLEDFRQKRSMGLTLAESELTKLDTERL
RDRVGLERERSCAEQILSKIEEVLLTSQPTEEEKCTTMQYVILSYMKHLGVKVKEPRNLE
PKRGRMGFLPKIKKSIKNEKEGEEKVKKPRFPSILGQPRRPSRNDSSAIGRAVELHNKRP
QKQSSQSAFNIPEHSDPGRGRPSLSSEGSEPAHTPCMMSSPPPSAPDPDTGQSPSSAPPR
PGEALLSGDSVDQTSRTPTNHFEFPSSPLEYLPEEDHEIDRAYEGGTPRPVRRMDTLGFI
EVQSEDDQSSELEADPPNWQQLVSRDVLAGLTPHEIKRQEVINELFYTERAHIRTLRVLD
QVFYQKLLSRDGILPPAEIKHIFSNLEEILQLHASIIEQVATIRKKNETSVIDQIGDDLL
SWFSGSEEEKIKRAAGTFCSNQPFALELIKTRQKKDNRFLTFIQEAESNPLCRRLQLKDI
IPTEMQRLTKYPLLLENIAKYTDDIEEKEKVKRAGECCRQILNYVNQAVKESENKQRLED
YQRRLDLSSLKQSEYPMIEEFRNLDLTKRKMIHEGPLTWKVNKDKTIELYTLLLEDILVL
LQKQDDRLILKCHSKNLAGTAETKHIFSPVIKLNSVLVRQVATDNKAFFVISMSDNGAHI
YELVAQTVSEQKTWQYVITQRAGSIKTKPLSVIALPQPASPINDGDREEEEEISTTGHQK
LSKESERISTGSIQSPEKDVDVTSPVVLQTTLSSPAPFEVLKPGEGVEGASFPESVLDER
PPFMQQRSRQAIAMDDEELAAFDFPPSPYRAEEALKNLMALKQLLFSHLLLEEEGSEEAH
FRRCSSTESSRAVSQRGSFDSSSVARAHELRPDRASTASEPASPRSPENGPEREAALVNS
DGVKVRGEEAAPGEQMAEQFIESAEGYAGSYLILEGCGAVGESSTDEDFLGVAGELSRRR
GSAEDSAIDLKKLLSSSSSSSSRRVSSITTPELSRQVMAHMGLLQANLHHLKEVETRYNI
LCQRLAGSASDTEENKEKS
NT seq 4200 nt   +upstreamnt  +downstreamnt
atgcgtgccggagtgcagactggggacaggataatcaaggttaacggcaccctagtgact
cattcaaaccatgtagaagttgtgaagctgattaaatccggctcctatgtggcgctgaca
gtgctggggcgccccccggggttaccccacatcccgctgtcagaatccgagagtgatgca
ggagccctgacctctcccacctcccccggacagaccgccgtcgacagggcgcccagcatc
accgccccccagccagtatggcaagaaaacaacagtgtccacaaccagaaggtggacatt
ctgcaaaagatgttatcgaaagaggtgcaggatttgcaggctatgaaggaggagtacagc
cggagccccaccccaaagctacagaaggagattcaggaggccaagaagcacattccacag
ctgcaagagcagctcagcaaagctaccggcggggcgcaggacggggttcagtcctctcgt
cccccctcggagtccctgcagatcagtgaagttgaggacacctctgatggggaccagacc
ctgtcccctcgcatggacggcagcgggacggacacacggcccaacagtggggcggtcgac
gttacatcaaacctttcctccgtcttcacggacagccactgccaaagagatactccctcc
cacagcccaaagactgcacccaaggatggagtaaactccttcgaaacgaccctcactgaa
gacacccctgaccagaactcccattcccagtcaattgtgggcagcccctcgccccggctt
ggaacacagatcatcggggcagaggatgactacttcgatacagagcaggaacagatgaac
ggtcagtgcagctgcttccagagtatggagttgctgaagtctcgtcctgcacacctggct
gctttcctccatcacgtcgtctcacagttcgatcctgcgccgctgctctgctacctctac
gctgacctgtacaagcagaccaattccaaagagacccggcgaatcttcatggacttcaac
accttcttcatggaccgtggggcgaatctgaaggttgctgttccagaagggatctcctcg
gagcttgagcggaggaggccggagttcatcccagaggaactgcatcgccagtacgtccag
ctcatgcaggacaccctgctaacagacatccagaagaacctggaagacttcaggcagaaa
cgcagcatggggctgaccctggcggagagtgagctcaccaagctggacacggagcggctc
cgggaccgtgtggggctggagagggagcgctcctgcgcagagcagatcctctcaaagatc
gaggaggttctgttaacgtcacaacccactgaagaggagaaatgcaccaccatgcagtac
gtcatcctctcctacatgaagcacctgggggtgaaggtgaaggagcctcgcaacctggag
cccaaacgagggcgaatgggcttcctccccaaaatcaagaagagcataaagaacgagaag
gagggcgaggagaaggtgaagaagccgcgctttcccagcatcctcggccagccccgcaga
cccagtcgcaatgacagcagcgcaattggacgtgccgtggagctccacaacaagcgtccg
cagaagcagtcctcgcaatcagccttcaacatccccgagcactcggaccccgggcgaggg
cggcccagcctgtccagcgagggctcggagccggcacacaccccctgcatgatgtcctcc
cctcctcccagcgcccccgacccggacactggccagtccccctcctctgcccccccacgg
ccaggggaggctcttctgtcgggggactccgtggatcagacgtctcggacccccaccaac
cactttgagttccccagctcccccctggagtacctgccagaggaggaccatgagattgac
agagcctacgaggggggaacacccaggccagtcagaaggatggacacgctgggcttcatc
gaggtgcagagtgaggacgatcagagctccgagctggaggcagaccccccaaactggcag
cagctggtgagccgggacgtgctggccggactgacgccccacgagatcaagagacaggag
gtcatcaacgagctgttctacacggagcgcgctcacatccggacgcttcgggtgctggac
caggtgttttatcagaagctgctttcccgcgacgggatcctccccccggccgagatcaaa
cacatcttcagcaacctggaggagatcctgcagctgcacgcttctataatcgagcaggtg
gcgacaatccgaaaaaagaacgaaacctcagtgatcgaccagataggagacgacctgctg
tcatggttcagtggcagcgaggaggagaagatcaagcgagcggccggcaccttctgcagc
aaccagcccttcgccctggagctcatcaagacacggcaaaagaaggacaaccgattcctc
accttcatacaggaggcggagagcaatcctctgtgccgccggctccagctgaaggacatc
atccccacggagatgcagagactgaccaagtacccactgctgctggagaacatcgccaag
tacacagacgacatcgaggagaaggagaaggtgaagcgggcgggggagtgctgccggcag
atcctcaactacgtaaaccaggctgtcaaggagtctgagaacaagcagagactggaagac
taccagcggagactggacctctcatcactcaagcagagcgagtaccccatgatcgaggaa
ttccggaatctggacctgaccaagaggaaaatgatccacgaggggcctctgacctggaag
gtgaataaagacaagacaatcgaactgtacacgctgctgctggaggacatcctggttctg
ctacagaagcaggatgaccgtctgatactcaagtgccacagcaagaacctggccggcact
gcggagaccaagcacatcttcagcccagtcatcaagctcaactcagtgctggtgcggcag
gtcgccacagacaacaaggccttcttcgtgatctccatgtctgataacggggctcatatc
tacgagctagtggctcagaccgtgtcggagcagaaaacgtggcagtatgtgatcacgcag
agggctggctccatcaaaaccaaaccgctcagtgtgattgccttacctcagccagcttca
cccatcaatgatggggaccgcgaggaagaggaggagatcagcaccaccgggcaccagaaa
ctgagcaaagagtccgagcgcatctccacaggcagcatccagtccccagagaaagatgtg
gacgtcacgtctccagtggttctgcagacgaccctgtcgagtcctgccccctttgaggtg
ctcaagcctggggagggggtggagggggccagcttcccggagtccgtgctggacgagcga
ccccccttcatgcagcagcgctcccgccaggccatcgccatggacgacgaggaactggcg
gccttcgacttccctccctccccgtacagggcagaagaagccttgaagaacttgatggcg
ctgaagcagctgctgttcagtcacttgttactggaggaggaaggcagcgaggaggctcac
ttccgacgctgctcttccacggagagcagcagggctgtgtctcagcgaggctccttcgac
agcagcagcgtggccagagcccacgagctgaggccagaccgggcttccactgccagcgag
ccagccagcccgcggagcccggagaacggcccggagagggaggcggcactggtgaacagt
gatggggtcaaagtgagaggagaggaggcagcgccgggggagcagatggcagagcagttc
atcgagagcgctgagggatatgcaggaagctacctgatcctggaggggtgtggggctgtg
ggtgagagcagcacagacgaggatttccttggggtcgccggggagctgagccggcgccga
ggatcagcggaggattctgcgattgacctcaagaagctcctctcttcctcctcttcctcc
tcctcgcgacgggtctcctccatcaccacccccgagctcagccggcaggtcatggcacac
atggggctgctccaagccaacctgcaccacctcaaggaggtcgagaccaggtataatata
ttatgccaaaggctggctggatcagcttctgacacagaggagaacaaagaaaagagttag

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