Polyodon spathula (Mississippi paddlefish): 121309458
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Entry
121309458 CDS
T07273
Name
(RefSeq) rho guanine nucleotide exchange factor 12-like isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04270
Vascular smooth muscle contraction
pspa04625
C-type lectin receptor signaling pathway
pspa04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
121309458
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
121309458
09153 Circulatory system
04270 Vascular smooth muscle contraction
121309458
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121309458
Membrane trafficking [BR:
pspa04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
121309458
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PH_13
PDZ
PDZ_6
SOS1_NGEF_PH
Motif
Other DBs
NCBI-GeneID:
121309458
NCBI-ProteinID:
XP_041098325
LinkDB
All DBs
Position
Unknown
AA seq
1399 aa
AA seq
DB search
MRAGVQTGDRIIKVNGTLVTHSNHVEVVKLIKSGSYVALTVLGRPPGLPHIPLSESESDA
GALTSPTSPGQTAVDRAPSITAPQPVWQENNSVHNQKVDILQKMLSKEVQDLQAMKEEYS
RSPTPKLQKEIQEAKKHIPQLQEQLSKATGGAQDGVQSSRPPSESLQISEVEDTSDGDQT
LSPRMDGSGTDTRPNSGAVDVTSNLSSVFTDSHCQRDTPSHSPKTAPKDGVNSFETTLTE
DTPDQNSHSQSIVGSPSPRLGTQIIGAEDDYFDTEQEQMNGQCSCFQSMELLKSRPAHLA
AFLHHVVSQFDPAPLLCYLYADLYKQTNSKETRRIFMDFNTFFMDRGANLKVAVPEGISS
ELERRRPEFIPEELHRQYVQLMQDTLLTDIQKNLEDFRQKRSMGLTLAESELTKLDTERL
RDRVGLERERSCAEQILSKIEEVLLTSQPTEEEKCTTMQYVILSYMKHLGVKVKEPRNLE
PKRGRMGFLPKIKKSIKNEKEGEEKVKKPRFPSILGQPRRPSRNDSSAIGRAVELHNKRP
QKQSSQSAFNIPEHSDPGRGRPSLSSEGSEPAHTPCMMSSPPPSAPDPDTGQSPSSAPPR
PGEALLSGDSVDQTSRTPTNHFEFPSSPLEYLPEEDHEIDRAYEGGTPRPVRRMDTLGFI
EVQSEDDQSSELEADPPNWQQLVSRDVLAGLTPHEIKRQEVINELFYTERAHIRTLRVLD
QVFYQKLLSRDGILPPAEIKHIFSNLEEILQLHASIIEQVATIRKKNETSVIDQIGDDLL
SWFSGSEEEKIKRAAGTFCSNQPFALELIKTRQKKDNRFLTFIQEAESNPLCRRLQLKDI
IPTEMQRLTKYPLLLENIAKYTDDIEEKEKVKRAGECCRQILNYVNQAVKESENKQRLED
YQRRLDLSSLKQSEYPMIEEFRNLDLTKRKMIHEGPLTWKVNKDKTIELYTLLLEDILVL
LQKQDDRLILKCHSKNLAGTAETKHIFSPVIKLNSVLVRQVATDNKAFFVISMSDNGAHI
YELVAQTVSEQKTWQYVITQRAGSIKTKPLSVIALPQPASPINDGDREEEEEISTTGHQK
LSKESERISTGSIQSPEKDVDVTSPVVLQTTLSSPAPFEVLKPGEGVEGASFPESVLDER
PPFMQQRSRQAIAMDDEELAAFDFPPSPYRAEEALKNLMALKQLLFSHLLLEEEGSEEAH
FRRCSSTESSRAVSQRGSFDSSSVARAHELRPDRASTASEPASPRSPENGPEREAALVNS
DGVKVRGEEAAPGEQMAEQFIESAEGYAGSYLILEGCGAVGESSTDEDFLGVAGELSRRR
GSAEDSAIDLKKLLSSSSSSSSRRVSSITTPELSRQVMAHMGLLQANLHHLKEVETRYNI
LCQRLAGSASDTEENKEKS
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgccggagtgcagactggggacaggataatcaaggttaacggcaccctagtgact
cattcaaaccatgtagaagttgtgaagctgattaaatccggctcctatgtggcgctgaca
gtgctggggcgccccccggggttaccccacatcccgctgtcagaatccgagagtgatgca
ggagccctgacctctcccacctcccccggacagaccgccgtcgacagggcgcccagcatc
accgccccccagccagtatggcaagaaaacaacagtgtccacaaccagaaggtggacatt
ctgcaaaagatgttatcgaaagaggtgcaggatttgcaggctatgaaggaggagtacagc
cggagccccaccccaaagctacagaaggagattcaggaggccaagaagcacattccacag
ctgcaagagcagctcagcaaagctaccggcggggcgcaggacggggttcagtcctctcgt
cccccctcggagtccctgcagatcagtgaagttgaggacacctctgatggggaccagacc
ctgtcccctcgcatggacggcagcgggacggacacacggcccaacagtggggcggtcgac
gttacatcaaacctttcctccgtcttcacggacagccactgccaaagagatactccctcc
cacagcccaaagactgcacccaaggatggagtaaactccttcgaaacgaccctcactgaa
gacacccctgaccagaactcccattcccagtcaattgtgggcagcccctcgccccggctt
ggaacacagatcatcggggcagaggatgactacttcgatacagagcaggaacagatgaac
ggtcagtgcagctgcttccagagtatggagttgctgaagtctcgtcctgcacacctggct
gctttcctccatcacgtcgtctcacagttcgatcctgcgccgctgctctgctacctctac
gctgacctgtacaagcagaccaattccaaagagacccggcgaatcttcatggacttcaac
accttcttcatggaccgtggggcgaatctgaaggttgctgttccagaagggatctcctcg
gagcttgagcggaggaggccggagttcatcccagaggaactgcatcgccagtacgtccag
ctcatgcaggacaccctgctaacagacatccagaagaacctggaagacttcaggcagaaa
cgcagcatggggctgaccctggcggagagtgagctcaccaagctggacacggagcggctc
cgggaccgtgtggggctggagagggagcgctcctgcgcagagcagatcctctcaaagatc
gaggaggttctgttaacgtcacaacccactgaagaggagaaatgcaccaccatgcagtac
gtcatcctctcctacatgaagcacctgggggtgaaggtgaaggagcctcgcaacctggag
cccaaacgagggcgaatgggcttcctccccaaaatcaagaagagcataaagaacgagaag
gagggcgaggagaaggtgaagaagccgcgctttcccagcatcctcggccagccccgcaga
cccagtcgcaatgacagcagcgcaattggacgtgccgtggagctccacaacaagcgtccg
cagaagcagtcctcgcaatcagccttcaacatccccgagcactcggaccccgggcgaggg
cggcccagcctgtccagcgagggctcggagccggcacacaccccctgcatgatgtcctcc
cctcctcccagcgcccccgacccggacactggccagtccccctcctctgcccccccacgg
ccaggggaggctcttctgtcgggggactccgtggatcagacgtctcggacccccaccaac
cactttgagttccccagctcccccctggagtacctgccagaggaggaccatgagattgac
agagcctacgaggggggaacacccaggccagtcagaaggatggacacgctgggcttcatc
gaggtgcagagtgaggacgatcagagctccgagctggaggcagaccccccaaactggcag
cagctggtgagccgggacgtgctggccggactgacgccccacgagatcaagagacaggag
gtcatcaacgagctgttctacacggagcgcgctcacatccggacgcttcgggtgctggac
caggtgttttatcagaagctgctttcccgcgacgggatcctccccccggccgagatcaaa
cacatcttcagcaacctggaggagatcctgcagctgcacgcttctataatcgagcaggtg
gcgacaatccgaaaaaagaacgaaacctcagtgatcgaccagataggagacgacctgctg
tcatggttcagtggcagcgaggaggagaagatcaagcgagcggccggcaccttctgcagc
aaccagcccttcgccctggagctcatcaagacacggcaaaagaaggacaaccgattcctc
accttcatacaggaggcggagagcaatcctctgtgccgccggctccagctgaaggacatc
atccccacggagatgcagagactgaccaagtacccactgctgctggagaacatcgccaag
tacacagacgacatcgaggagaaggagaaggtgaagcgggcgggggagtgctgccggcag
atcctcaactacgtaaaccaggctgtcaaggagtctgagaacaagcagagactggaagac
taccagcggagactggacctctcatcactcaagcagagcgagtaccccatgatcgaggaa
ttccggaatctggacctgaccaagaggaaaatgatccacgaggggcctctgacctggaag
gtgaataaagacaagacaatcgaactgtacacgctgctgctggaggacatcctggttctg
ctacagaagcaggatgaccgtctgatactcaagtgccacagcaagaacctggccggcact
gcggagaccaagcacatcttcagcccagtcatcaagctcaactcagtgctggtgcggcag
gtcgccacagacaacaaggccttcttcgtgatctccatgtctgataacggggctcatatc
tacgagctagtggctcagaccgtgtcggagcagaaaacgtggcagtatgtgatcacgcag
agggctggctccatcaaaaccaaaccgctcagtgtgattgccttacctcagccagcttca
cccatcaatgatggggaccgcgaggaagaggaggagatcagcaccaccgggcaccagaaa
ctgagcaaagagtccgagcgcatctccacaggcagcatccagtccccagagaaagatgtg
gacgtcacgtctccagtggttctgcagacgaccctgtcgagtcctgccccctttgaggtg
ctcaagcctggggagggggtggagggggccagcttcccggagtccgtgctggacgagcga
ccccccttcatgcagcagcgctcccgccaggccatcgccatggacgacgaggaactggcg
gccttcgacttccctccctccccgtacagggcagaagaagccttgaagaacttgatggcg
ctgaagcagctgctgttcagtcacttgttactggaggaggaaggcagcgaggaggctcac
ttccgacgctgctcttccacggagagcagcagggctgtgtctcagcgaggctccttcgac
agcagcagcgtggccagagcccacgagctgaggccagaccgggcttccactgccagcgag
ccagccagcccgcggagcccggagaacggcccggagagggaggcggcactggtgaacagt
gatggggtcaaagtgagaggagaggaggcagcgccgggggagcagatggcagagcagttc
atcgagagcgctgagggatatgcaggaagctacctgatcctggaggggtgtggggctgtg
ggtgagagcagcacagacgaggatttccttggggtcgccggggagctgagccggcgccga
ggatcagcggaggattctgcgattgacctcaagaagctcctctcttcctcctcttcctcc
tcctcgcgacgggtctcctccatcaccacccccgagctcagccggcaggtcatggcacac
atggggctgctccaagccaacctgcaccacctcaaggaggtcgagaccaggtataatata
ttatgccaaaggctggctggatcagcttctgacacagaggagaacaaagaaaagagttag
DBGET
integrated database retrieval system
