Polyodon spathula (Mississippi paddlefish): 121309742
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Entry
121309742 CDS
T07273
Symbol
setx
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121309742 (setx)
Enzymes [BR:
pspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
121309742 (setx)
5.6.2.5 RNA 5'-3' helicase
121309742 (setx)
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121309742 (setx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_19
AAA_30
Viral_helicase1
ResIII
UvrD-helicase
AAA_16
AAA_22
T2SSE
SLFN-g3_helicase
UvrD_C_2
MetallophosC
PTP-SAK
TAD2
Motif
Other DBs
NCBI-GeneID:
121309742
NCBI-ProteinID:
XP_041098815
LinkDB
All DBs
Position
Unknown
AA seq
2575 aa
AA seq
DB search
MSTCRWCTPGGPDATDFLRQYASGSLLSNEEKAANEDLCYCLECVVEYHRAREELPSLHK
CLWKLETSRLLDHFGKSLKEEVGEEDDLFIVEDDQEIQIHGITGPEFENNLRVPLLEILK
YPYVLVHPKISELCVEALCRMEKSSSFQVFDKHSGIYLLLVHPDETVRKWAIRTARALGK
VDRDDFYDLQDVFSCMFKVIELDLFLNSDIYSCSVMEEGKLILLPPHLYDSTNYKDYWLG
ICMLLTVLDSQAMDSLLLGPDKQNDLMHSILNTMEKSTPDEGLDPFWPALQCFMVILDRL
GSKVWGQLIDPTQAFQTIIGSRSYNQEIENIRRNTTGPKIKVEPDQDENMVTCSQIVYDC
NTKKQNKDTGSRSDLSTEHCSIMYEEMQSLVNVLQSDMGQEMRVHNSTFLWFIPFVQSVM
DLKDLSIVYTGEIIHHLCAEIKDLINGRVQQCDKVTEFFILILVFVIELHRNKNCMNLLW
FSSQKWVEVLVKCATLSSWTSSHSCSTRVSSTTSSSMLPQVTNVAPQACIQLIRSLLREG
CQLNPQSTCKQFLDKLNLQLRKGVMPGWDLSHLAIQDLQVCLRQLVKFMRDKKPALETGT
GIGGETVSSPITTSRLLGPEEGKESRSRFECKSGISSPALSIGEKDGEPLCFQSNHKMKE
ERPWDDAYFARPSATIEVQDRDEDSNREAKITQMLQIKKEKDLCTDVCGMGSNSDTCPMK
KASDIKDALSKMEQNISSKFKPHLGRMQDLKSRLSKVFINPSLIKKKKNDGSPGSKKQML
SHNISKEKRMSFSLEPTEKVDAPECLKSFPVRIKQEKTETNKELSIVQCFDTESYSDNED
DVPLTVIKSNLEKKRIFSEEVNQNLLTDSQVDKDLELLSLTALSKSYSFPVDSSQESSVR
QLPDRIERKVRSNVRNILKAEREDDLIILENPVITISDSDSTKEGNDLHVGKNSATADRF
ERGKKIQRRQSAKLEPSDVKIAEKDNGEDLDRGSSPPLYNDDSQLFEFETEAEVFSAWDD
SQMDNALSSPETEQESSTKKNSSPEKSPDLSDMYNDWGYDTDYVPDDLIERAAEHAEKQL
QREQESVRVENTSEVSTPVFYGVKRKSSTDISSDVGSKSGTQPDKNAMPSTSSTPCLTLA
KKLANKRESCVKVTSNRSNFFTSPKAAQNERKAATATSRSSAVSCKTPSRTTSAPAIVPP
KKVRLREEPKSTAEKLGLKKKERKAFDLSQRSLDCVAELRNYGQHVQVEKQKRRRRSRKS
QGTMLISPQKLVVKGNKKLLASQDLQFFRQSRPKKSKQVGELSKRNTSEETLPPKREGAD
GEDDVFFPLTPPDPASAEIHDPEVQLAEKPGAAAGSHTDYLSKTLHRSDHGFPQMECQKS
VVLENKEEIKLNVNEDIKHDDDDDDQMCLTQMDQIDMEICSQLEYANDYFAGTQRDSVDM
EIDEPENEMHAVDSPSVESFRSGQADNIAAVCSAEAEILNSASSKPKDDHLFLKPGMPLS
LIKIAKPSTTKIYTPSSRSATLAQELDNPTKTQKAGLRNKVCPMLPPRKPSVPPPESRQP
ALPKQPAPICSYKHQSRDVSQVKQAPVDGRPMSSVAQQPPKNISSHNYDQSFLIQQVLEW
NHEMFENFCLFGTPNNLCMFPLKEVPEKFSSFDEYFATFYPLLMVNTFEELVQEWQKNLK
SQKGIEKMLNLNGIEYQNRVSCASFSVPLHKSEVDRQQYPKEDDLVFLWLPQHNHAYTSE
EREVIEPVAHFGCVSRSNVSAAGQNDSKAILYITIKTCGNVSAVHDQPVKCMVIGSLIST
LRAFKALYSLRNNVMARAILGPHVSFFRPGQQYKVANLSILDYNDEQQKAINSAIAMVRQ
PQRIPKMCLIHGPPGTGKTKTIVGLLESIFSEDRENSFPVENMRLKGRKPRVLLCAPSNA
AVDHLMKKIILNFKEKSRDHKNPLGNCGDINLVRLGMEKAISKDLLGFSLDNQTKIRTQR
GQFVQDINIYRHKEDLDQQLDDLSRQCAVHQKHREKFQQLTDEKYRLLKEREQLGRQLKE
TRSRKQEVQARVLQDAHVICCTLNTSGSILLESAFRRLGHDPFSCVIVDEAGQATEMETL
IPLTYRCPALVLVGDPEQLPPTVVSQKAREKRYDQSLMARLWKCLHRESKENPGVQTPIN
FLSIQYRMHPDICEFPSKYIYKRALKTDGDTAEKRCGTSWPFQPYRLFDVTDGFETKAAE
SFHNDQEVKLVMQLIRLIAEKQKGRVGVITPYSAQKQRIKDCINREGSKLFQFVEVDTVD
GFQGREKDCIIVSCVRASNTQGSIGFLGNRQRLNVTITRAKCSLFILGHLKTLMDHKDWG
ALIQDAHKRGTIIKTREKDYKTDAVQIFKPEPGLLRSFSYPPVESRLLSKPAVVQTLATS
SNDKSAASGLSLTLPAANNPTQVTRRQSSDTRCCLLAQPLVPAKPSTSERPRDPRLAGRA
KEEASKETNQPSNKTIAKDPQPSVSTTSHPSSRDSGANTSASSYTAGNAPSARPSPSAYK
DQDYRNPSWNGEGSRSGPGDHQKKTQSSSGQHNRLPQKRPSNASWTHPLEKRKNR
NT seq
7728 nt
NT seq
+upstream
nt +downstream
nt
atgagcacatgccgctggtgcacacctggtggccctgatgccactgactttctgcgtcag
tacgcttctgggtcacttttgtcaaatgaagaaaaagctgccaatgaagacctctgctac
tgcctggagtgtgtggtggagtatcacagagccagagaagagctaccatccctgcacaag
tgcttgtggaagttggagacttcccgactgcttgatcactttggaaagtcattgaaagag
gaggtcggggaggaggatgatttgtttatagtggaagatgaccaagagatccaaatccat
ggaatcacagggcctgaattcgagaataatctacgggttccactgctggagatattgaag
tacccctatgtgttggtacaccccaaaatcagcgagttatgtgttgaggctctttgtagg
atggaaaagtccagttccttccaggtctttgataaacattctgggatttacctccttcta
gtacaccctgatgaaactgtgcgcaagtgggcgatccgcactgccagggccctgggtaag
gtggaccgggatgatttttacgaccttcaggacgtgttctcctgcatgtttaaggttatt
gagctggacctctttctcaactccgatatatacagctgtagcgtaatggaagaaggcaag
ctgatcctgcttccacctcacctctatgactccactaactacaaggattactggctaggt
atctgcatgcttttaacagtattggattctcaggctatggactctttgctgcttggtcct
gacaaacagaatgatctcatgcattcaattctcaacaccatggagaagagtacaccggat
gagggtttagaccctttttggccggcattgcagtgttttatggtgattttggatcggctc
ggctctaaagtttggggtcaactgattgacccaactcaggcatttcagacaattattgga
agccgcagttacaatcaggagattgaaaatatacgcagaaacacaactggacccaaaatc
aaggttgaaccagaccaagatgaaaacatggtgacatgtagtcaaattgtctatgactgt
aataccaagaaacaaaacaaggacactggtagcagaagtgacttaagtactgaacattgc
tcaatcatgtacgaagaaatgcagtctctagtgaatgtgcttcagtctgatatggggcag
gaaatgcgtgtccacaacagcacttttttatggtttatcccatttgtacagtctgtgatg
gacctcaaagaccttagcattgtctatactggagaaatcattcaccacctgtgtgcggaa
ataaaggatcttataaacgggcgggtgcaacagtgtgataaagtcacagaatttttcatc
ctcattctggtttttgtcattgaactccaccgcaataaaaactgcatgaacctattgtgg
ttcagttcacagaaatgggttgaggtgttggtgaaatgtgccacgctttctagttggact
tccagtcatagctgttcaacaagagtgtcttcaacaacttcctcatccatgcttcctcaa
gttaccaatgtggctcctcaagcctgtattcagttgatacgtagcctccttagggaagga
tgccagctgaatccacagagcacctgcaagcagtttttggacaagctgaacttgcagtta
cgcaagggtgtgatgccaggatgggatcttagtcacttggcgatacaagatctacaagtt
tgtctgagacagcttgttaaattcatgagagataagaaaccggctttggagaccggtacg
ggcatcggaggagaaactgtttcttcacccataacaactagtagactattgggacccgaa
gaaggaaaagagagcagaagtcgttttgaatgcaagagtggaatatctagtccagcattg
tctataggggagaaagatggcgagcctttgtgctttcagagtaaccataaaatgaaagag
gaaaggccttgggatgatgcatattttgctaggccttctgctaccattgaagttcaggac
agagatgaagactccaacagagaggctaaaatcacacaaatgctgcaaataaaaaaagaa
aaggacttatgtactgatgtgtgtggaatgggtagtaattctgatacctgccctatgaaa
aaggcctcggatataaaggatgcgttatcaaagatggaacaaaatatttcaagtaagttt
aaacctcacctgggtcggatgcaggatctgaaatccagactctcaaaggtgtttataaat
ccgtctcttattaagaagaaaaaaaacgatgggtctcctggatccaaaaaacaaatgctc
agtcacaatatctccaaagaaaagcgaatgagcttttcactagagccaactgaaaaagtg
gatgctccagaatgtttaaaaagctttccagtgagaataaagcaagaaaagacagaaact
aataaggagctgtcgattgttcaatgttttgacacagaaagttatagtgataatgaagat
gatgtcccgctcacggttataaagtccaatctggagaaaaagagaattttctcagaggag
gtcaaccaaaatctcttgacagattcacaggttgataaagatctggaattactctcttta
actgccctttcaaaaagttatagtttccctgttgattcaagtcaggagtcttcagtacga
cagctgccagacaggatagaaaggaaggtgaggagtaatgtgagaaatatcttgaaagca
gagagagaggatgatctaattatattggaaaatccagtaattacaatttccgattcagac
tctacaaaggaaggtaatgacctacacgttggcaaaaatagtgccacggctgaccgattt
gaaagaggaaagaaaatccaaagacggcaaagtgcaaagcttgagccttctgatgtcaaa
attgcagagaaagacaacggagaagatttggacagagggagttctccaccactttacaat
gacgattcccagttgtttgagtttgaaactgaagcagaagtgttttctgcctgggatgac
tctcaaatggacaatgcactgtcatctccagaaactgagcaagaaagctctacaaaaaaa
aattcctccccggagaagagtccagatctgagtgatatgtacaatgattgggggtatgac
acagattatgtcccggatgacctgatagaaagagcagcagagcatgctgaaaaacagcta
cagagagagcaggaatctgtccgtgtggagaacacaagtgaggtgagcacgccggtgttc
tatggggttaaacgcaagtcttcaacggatatttcatcagatgtgggcagtaagagtggg
acacaacctgataaaaatgccatgccatccacctcatccactccatgcttaacattagct
aaaaaattggccaataaaagggaatcttgtgtaaaagtaacatcaaacagaagtaatttt
tttacatctccgaaagctgcacaaaatgaaagaaaagcagcaactgcaacatcaaggtca
tctgctgtgtcctgcaagaccccgtctcgtactacttcagctcctgctatagttccacca
aaaaaagtacgtctgcgagaagagcccaagtctactgctgagaagcttggtctgaagaag
aaagaacgcaaagcatttgatctttctcagagatcattagactgcgtggctgagctgcgg
aactacggtcaacatgtgcaggttgagaagcagaagaggagaaggaggagcaggaaaagt
cagggcacaatgctgatttcccctcagaagctggtggttaaagggaataaaaagctactt
gcttctcaggaccttcagtttttccgacagagtagacctaaaaaatcaaaacaggtcgga
gagctttcaaaacgcaatacatctgaggagactctgccacctaaaagagaaggggccgat
ggagaggacgatgtttttttccctttgactccgcctgacccagctagtgcagaaatccat
gatccagaggtgcagttggctgaaaaaccaggtgctgctgcaggaagtcatacagactat
ctgtcaaaaaccttgcacagaagtgatcatggctttccacagatggagtgccaaaagtca
gtggtattggaaaataaggaagaaattaaactaaatgtgaatgaagatatcaaacatgat
gatgatgatgatgatcagatgtgtttgacacagatggatcagattgacatggagatatgc
tcacagttggagtatgcaaatgactattttgcagggacccaaagagattcagtggacatg
gaaattgatgagccagaaaatgaaatgcatgcagttgactctccaagtgtggaaagcttc
aggagtggacaagcagataacattgcagcagtttgttctgcagaagcagaaattctgaat
tctgcatcatctaaacccaaagatgatcacctgttccttaagccaggaatgcccctgtcc
ttaataaaaattgcaaaaccttccacaactaaaatatatacacccagctcaagaagtgct
accttggcacaagagctggataacccaacaaaaactcaaaaagctggtttaagaaataag
gtttgcccaatgttgcctccaagaaagccaagtgtacccccacctgaaagtaggcagcct
gctcttccaaagcagcctgcccctatctgttcatataaacatcagagcagggatgttagt
caggtgaagcaggcccctgtagatggtaggccaatgtcttctgtagcccagcaacctccc
aagaacatttcaagccacaactatgaccagtctttcttgatccagcaagtcctggaatgg
aaccatgagatgtttgaaaacttctgcctgtttggaaccccaaataatctgtgtatgttt
cccctgaaagaggtcccagagaaattcagttcctttgacgagtactttgccacgttttat
ccgttgctgatggtgaatacttttgaggagttagtacaggagtggcagaagaatctgaaa
tctcaaaaggggattgagaagatgttgaacctgaatggcattgaatatcagaatagagtc
agctgtgcaagtttttcagtgcccctacataaatctgaggtggacaggcagcagtacccc
aaggaagatgacttggtctttctgtggctgccacagcataaccatgcctacacgtccgag
gagagagaagtgatagaaccagtcgcacactttggctgtgtctctagaagtaatgtttct
gcagcaggccaaaatgactccaaagcaattctctacatcaccattaaaacttgtgggaat
gtttctgctgtacacgaccagccagtaaagtgcatggtgattggatctctgatcagcacc
ttgcgagcatttaaagccctctactccctgagaaacaatgtgatggccagagcaatcctt
ggaccccatgtctcttttttcaggccaggacagcaatataaagttgccaatttgagcatt
ctggattacaacgatgaacaacagaaggccataaactctgcaatagccatggtcaggcag
cctcaaaggattcccaaaatgtgcctgatccatggaccgcccggaacaggcaaaacaaaa
acaattgtaggacttcttgagagcatcttctccgaggatcgggagaattcattcccggtg
gagaacatgcgtttaaagggcaggaagcccagggttcttctctgtgcaccgtccaacgct
gcagtggaccaccttatgaagaagattattttgaattttaaggagaaaagcagggaccat
aagaacccattaggtaactgtggggatattaatttggtacgcctcggaatggagaaggct
atttcaaaagacctgctgggattcagcctggataaccagactaaaatccgaacacagagg
gggcaatttgtacaagacataaatatttacagacacaaggaagatttggatcagcagctt
gacgatctgtcacgccagtgtgccgtgcatcagaaacacagagaaaagtttcaacaactg
acagatgaaaagtacagattgcttaaagagagagagcaacttggacgacagctgaaagag
actcgaagcagaaaacaagaagtccaagccagagtcttgcaggatgcccatgttatctgc
tgcacactgaataccagtggaagcattctgctggagtcggccttcaggagactggggcat
gatccattcagttgtgtcatagtggatgaggcagggcaggccacagagatggagactctg
attccactaacctatcgttgtccggcattagtcctggtcggggacccagaacagctgccg
cccacagtagtctcccagaaagccagagagaaaaggtatgaccagtcgctgatggctcgt
ctgtggaagtgcttgcacagagaaagcaaagagaacccaggggttcagactcccatcaat
ttcctcagcatacagtacaggatgcaccctgatatctgtgagttcccatccaaatacatc
tacaagagggcactgaaaaccgatggcgatactgcagaaaagagatgtgggacaagctgg
cctttccagccatacaggctgttcgatgttacggatggctttgagacaaaagcagcagaa
tcctttcacaatgatcaggaggtgaagctagtgatgcagctgattagactcattgctgaa
aagcagaagggacgtgtgggagtcatcaccccctacagtgcgcagaagcagaggatcaag
gactgtatcaacagagaaggcagtaaactgttccaatttgtggaagtggacactgtggat
ggttttcagggtcgtgaaaaagattgcattattgtgtcttgtgtcagagccagcaatact
cagggttcaattgggtttctaggtaatcgtcagcgattaaatgtcacaattacgcgagca
aagtgtagcttgttcattctggggcatttgaagacgctgatggatcacaaagactggggt
gctctgattcaggatgctcataaaagaggtaccattataaagactcgggagaaagactat
aaaactgacgcagtgcagattttcaaaccagagcctgggctgctacgaagcttctcctat
ccaccagtggaatccagattgttgtctaaacctgcagtagtgcagacgctggccactagc
agtaatgacaagtctgctgccagtggcctgtcgctgaccttgccagctgcaaacaatcct
acacaagtaacaaggcggcaatcttcagacactcggtgctgtttgttggcccaacccctt
gttccagcaaagccttctacttcagaaaggcccagagaccctcgattggccggccgggca
aaggaagaagcctcaaaggagacaaaccagccttcaaataagacaattgccaaagacccc
cagccctctgtatcaacaactagtcaccctagctccagagatagtggtgccaataccagt
gccagcagctacacggctggaaacgctccctctgcaaggccctctccctctgcttataaa
gaccaggactacagaaacccctcctggaatggggagggaagcaggtcaggaccaggtgac
catcagaaaaagacgcagagtagcagtggccagcataacaggctccctcagaaaagacca
tccaatgcaagttggacacatccgttggagaagcgcaaaaatcggtga
DBGET
integrated database retrieval system
