Polyodon spathula (Mississippi paddlefish): 121309887
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Entry
121309887 CDS
T07273
Symbol
lingo4b
Name
(RefSeq) LOW QUALITY PROTEIN: leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 4b
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121309887 (lingo4b)
Membrane trafficking [BR:
pspa04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
121309887 (lingo4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
I-set
Ig_3
LRR_5
Ig_2
ig
LRR_RPS2
V-set
C2-set_2
LRRNT
Ig_C17orf99
Big_6
LRR_Zer-1
Motif
Other DBs
NCBI-GeneID:
121309887
NCBI-ProteinID:
XP_041098993
LinkDB
All DBs
Position
Unknown
AA seq
612 aa
AA seq
DB search
MITGDGRGRPGVWLPLLLAGLAVALGGSPLSCPPKCECSSGEQRVLCARRRLTVVPENLP
SDAKLLDLSRNRLKTLSSEEFSDLPLLLELDLSENVISVVEPGSFRNLPALRILRLRGNR
IKILPVGVFSGLQSLRVLDLRQNQILVFVDHTFRELSNLRQLEVGENDLVFLSNRAFSGL
LSLQELTLEKCNLTSIPVEALSQLQGLLLLRFRRLSSIGGIQDLSFRRLQRLRSLEFRQC
PSLGTLTGNSLLGLNLTSLSITGCNLTSVPYLSLRHLVYLRYLDLSYNPISVVQGHLLGD
LLRLQEFHLAGGKLLTVEPGAFRGLTQFRLLNVSSNELPTLEEGVFHSVGNLETLRLDGN
PLACDCRLLWLIRRRLRLNFDGRQPSCFTPESARGREFKDFTEILFPGHFTCRRSRIIDR
KPQVVQTDEGNTVLFSCQADGDPAPKISWLTPQKTVVTPSGRVRVLLDGSLEVRYAQVQD
GGSYQCVASNAAGNDSLPVSLQVRGFNLSSAGNRSFLYFPDLQPTPFNVSTSRGPARKPF
GAKKLLLATTMGFISFLSSMAICFVFMFFWSRGKGKIKHNTTIAFVPRSSGRRGGGGGAE
GGDGGKFSMRLM
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgatcacgggcgatggtcgcgggcgccctggggtgtggctgccccttctcctggcgggt
ctggccgtggctctggggggttcccccttgtcctgccccccaaaatgtgagtgttcctcc
ggcgagcagagggtgttgtgcgcccgccgacgcctgaccgtcgtcccggagaacctcccc
tccgacgcgaagctcctggacctgagcaggaaccggctgaagaccctcagctcggaggag
ttctccgacctgcccctgctcctggagctggacctgagcgagaacgtcatctccgttgtg
gaacccggctccttccgcaacctgcccgccctccggatcctccgtctcagggggaaccgg
atcaagatcctcccggtgggggtgttctccggcctccagagcctccgcgtcctggatctg
cgccagaaccagatcctggtgttcgtcgaccacaccttcagggagctctcgaacctgcgg
cagctggaggtcggggagaacgacctggtcttcctctccaaccgcgccttctccgggctc
ctcagcctccaggagctgaccctggaaaagtgcaacctcacctccatccccgtggaggcc
ctatcccagctccaggggctgctcctgctgcgcttccgacggctcagcagcatcggcggg
atccaggacctttcgttcaggaggctgcagaggctgaggagcctggagttcaggcagtgc
ccctcgctgggcaccctgacagggaacagcctcctggggctgaacctcacctcgctgtcc
atcacaggatgcaacctgacctccgtcccctacctgtctctccgacatttggtctacctc
cgctacctcgacctctcctacaaccccatctccgtggtgcagggccacctgttaggagac
ctcctcaggctgcaggagttccacttggctggaggcaagctgctgaccgtcgagccgggg
gcttttcggggcttgacccaattccggctgctcaatgtctcctctaacgagcttcccacc
ctggaggagggggttttccactcggtgggcaacctggagaccctccggctggacgggaac
cccctggcctgcgactgccggctgctctggttgatccgcagacggttgcgtttgaatttc
gacggccgccagccctcctgcttcaccccggagtcggcccgcgggagggagtttaaggac
ttcactgaaattctgtttccggggcatttcacctgcaggaggtcccggatcatagaccgg
aagccccaggtggtccagactgacgaaggcaacacggttctgttctcctgccaggcggat
ggggacccagccccaaagatctcctggctcaccccacagaagacagtcgtgacccccagc
ggcagggtccgggtgcttctcgatgggagcctggaggtccgttacgctcaagtccaggac
ggcgggagctaccagtgcgtggcgagcaacgcggccgggaatgacagcctgcccgtcagc
ctgcaggtgcgcggattcaacctgtcgtcggcgggcaaccgcagcttcctgtactttccg
gacctgcagccgacccccttcaacgtctctacctctcgggggcctgcccgcaaacccttt
ggcgccaagaaactcctcttggccaccaccatgggcttcatatccttcctcagctcgatg
gccatctgcttcgtctttatgtttttctggagccgtgggaaggggaagattaagcacaac
accaccattgcctttgtgccgcggagcagtgggaggaggggaggggggggaggagcagag
ggaggggacgggggcaagttctccatgaggctcatgtga
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