Polyodon spathula (Mississippi paddlefish): 121309963
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Entry
121309963 CDS
T07273
Name
(RefSeq) DENN domain-containing protein 4B-like
KO
K20163
DENN domain-containing protein 4
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121309963
Membrane trafficking [BR:
pspa04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
121309963
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DENN
uDENN
dDENN
PPR_2
PPR_long
PPR_3
PPR
Motif
Other DBs
NCBI-GeneID:
121309963
NCBI-ProteinID:
XP_041099095
LinkDB
All DBs
Position
Unknown
AA seq
1507 aa
AA seq
DB search
MITGWLSGSMTEETCPQLVDYFVVAGLTPGSKPLDEEGPQRAVRPVEAVTELAVIARSLG
EDVPEGFTCIEKTPGGHTAELSAGLLNNPHMYLCYKRGRDKAPILDLGVLYEGKETLKPG
WHVIETTPYSHSANLGSGGPGTQRTFITYRRAPDSQALNTLGVTDISLILPSKGESAPHT
YCKVDKNLNTGLWGPALYLCYKRAVAKANALLYEAGLLSRYPEEDTASFPLPDSVPEFCL
PMGATIESWPLNTKYQLPVFSTFVLTSASADKVYGAALQFYEAYPRERLKDKQCLRLGLV
SVIDRRPITSRMVQVKKSICVLSHWPLFDVFQKFLTFIYRYSISGPHVLPIEKHISSFMH
NVPFPSPHRPRILVQLSPYDNLLLCQPVSSPLPLSGASFVKLLQNLGPENAASLLLAVLS
ESKLLLHSLRPDVLTSVGEALVSMTFPLRWQCPYIPLCPLTLADVLCAPMPFIVGIHSSY
FDLYDPPNDVICVDLDTNTIFQSEDKKVLSWRALPRKPCKALLHTLGTLHQQLEKMYTPA
LEEATLEFLLTDYDLIYGRRKQLELEIQEAFLRFMSCLLRGYRSYLLPITQAPSDRTTDS
SSLFNLQGFLKSRERTHQKVFSVLTRTQMFTQFIEECSFVSDRHVCLEFFDGCVEKVDVE
KPGQTRLIDLDEAHSGERTVFIMPPEEPQGPDGSECPALYRYDVFPPLRMELFDQPQDLL
KVQARGSAPSSPAPRRTKQEIKLAQKRAQKYSAVPEMWSKCLLGHCYGLWFIYLPVFVQA
ESSKVRALQTAYEVLKHMETRKVVLPDEVCYRILMQLCGQYGQPVLAVRVLLEMKRAGIT
PNTITYGYYNKAVLESKWPSTNQGGRLLWAKLRNVVLAVAHFRQPIKQWKQQQRMAYKDP
PDITVDRASEARPQCSLIRQASWSGLSDASSHESLSGPLIKSNSLSSMRGHTEKSKDLRR
ATLKNLGAPGNDSGDAHKPPSGRVLQRSEVCLSTFSRDFAETEGRERSYSCQPGDPGEQG
GGYLLEQESGGRGKKAVDENCNHVASSGRSLAGKLQQLLTPTKHRATVRRTASVDDRQHS
GSAGPVSRASEQRQSRRGHVTDKLLRAKERLYTAASESSLSVGSDLEVSDSTPLTFHARK
SSDSSQEVPGMEVLMSSCSLCRSCNSLVYDEEIMAGWTSDDSNLNSSCPYCSGSFVPLLN
MEFSAQPLAPSSVTGSSSAEISLVSDSVVEPPAAQDCFLRPLHNGLSEEDSASDCSSRLS
DGSSMSLVPSSAGGPIQGVTVAYLSPLVLRKELESLLENEGDGVLAQPQLIDSHPIIYWN
LVWYFQRLGLPSNLLALLSTSQPGSQLTQTSPDESCAVRVRLMWDTLNPDVDHWPPLYIL
WRMHSGVPTRCHGWRRHSHPFTLGFLEEVLRWVGMNEVHKAVSLFLETVGTQPGPPRVQR
SLYREILFLTLAAMGKDNVVAFDKKYKTAYSRLCGSLGKEELHKNRVQPPSTKAVDCRKS
FLVPLEC
NT seq
4524 nt
NT seq
+upstream
nt +downstream
nt
atgattacgggctggctctcgggcagcatgacggaggagacatgcccccagctggtggat
tacttcgtggtggctggcctgacgcccggctccaagcccctggacgaggagggcccgcag
cgggcagtgcgcccggtggaggccgtgacggagctggcagtcatcgcgcgctcgctgggc
gaggacgtgcctgagggcttcacctgtatcgagaagactccgggcgggcacacagcggag
ctgagcgcggggctgctcaacaacccacacatgtacctgtgctacaaaagaggcagagac
aaggcgccgatactcgacctgggggtcctgtatgaagggaaggagaccctgaagccaggc
tggcatgtgatcgagaccactccctacagccactctgctaacctgggatctgggggtcct
gggacccagcgcaccttcatcacctaccggcgcgcccccgactcgcaggccctcaacacg
ctgggcgtgacggacatctccctcatcctgcccagcaagggggagagcgccccacacacc
tactgcaaggtggacaagaatctcaacacgggcctgtggggtccagcgctttacctctgc
tacaagagagccgtcgcaaaggccaacgccctgctctacgaagctgggctgctcagccgc
taccccgaggaagacaccgcttccttccccctgcctgactctgtgccagagttctgtctg
cccatgggagccaccatcgagagctggcccctcaacaccaagtaccagctccccgtcttc
tcaacatttgtgctgaccagcgcctctgcagacaaggtgtacggcgctgctctccagttc
tatgaggcgtatccacgggaacgcttgaaggacaagcagtgtctgcggctgggattggtc
agtgtgatcgaccgccggccaatcaccagccgcatggtgcaggtgaagaagagcatctgc
gtgctgtcccactggcccttgttcgacgtcttccagaagtttctaaccttcatctaccgc
tactccatctcgggtccccacgtcctccccatagagaagcacatctccagcttcatgcac
aatgtgcccttcccctcaccacacagaccccgcatactggtgcagctctccccctatgac
aacctgctgctgtgccagccagtgtcttcaccgctgcctctcagcggagctagtttcgtg
aagctgctccagaacctgggcccagagaacgctgcctctctgctgctggctgtgctgagt
gagagcaagctgctgctgcactcgctgaggccggatgtgctgaccagcgtgggcgaggcc
cttgtctctatgaccttccccctgcgctggcagtgcccctacatccccttgtgtcccctg
accctagcggacgtgctgtgcgcccccatgcccttcatcgtgggcatccactccagctac
ttcgacctctacgacccccccaacgatgtcatctgtgtggacctggacactaacaccatc
ttccagagtgaggataagaaggtgctgtcgtggcgggcgttgcctcggaaaccgtgtaaa
gcgctactgcacacgctggggacgctccaccagcagctggagaagatgtacacccctgct
ctggaggaggctaccctggagttcctgctcacggattatgatctgatctacgggcgccgc
aagcagctggagctggagatccaggaagcgttccttcgcttcatgagctgcctgctgcga
gggtaccgctcctacctgctccccatcacgcaggccccctcggaccggaccaccgactcc
agctccctcttcaacctgcaggggttcctgaagtctcgagagcgcactcatcagaaggtg
ttctctgttctcacccgcactcagatgttcactcagttcattgaggagtgctccttcgtc
agcgaccggcacgtctgcctcgagttcttcgacgggtgtgtagagaaggtggatgtagag
aagccggggcagacgcgcctcattgacctggatgaagcgcacagcggggagcgcaccgtg
ttcatcatgccccctgaggagccacaggggcctgacggctcggagtgccccgccctctac
aggtacgatgtgttccctcccctcaggatggagctgttcgaccagccccaggatctgctc
aaggtccaggcccgaggcagcgcccccagcagccctgccccccgcaggacaaagcaggag
atcaagctggctcaaaagcgagctcagaagtactccgcggttccggagatgtggtccaag
tgtctgctgggccactgctacgggctgtggttcatctacctgcccgtcttcgtgcaggcc
gagagctccaaggtgcgagcgctgcagactgcctacgaggtgctgaagcacatggagacg
aggaaggtggtgctgccggacgaggtgtgctaccggatcctgatgcagctctgcggtcag
tacggtcagccagtcctggcggtcagagtgctgctggagatgaagagggccggcatcact
cccaacactatcacatacggctactacaacaaggcggtgctggagagcaagtggccctcc
actaatcagggcggccgtctgctctgggccaaactgcgcaacgtggtactggccgtggcc
catttccggcagccaatcaaacagtggaagcagcaacagaggatggcatacaaggacccc
ccagatatcacggtcgatcgagcctcggaggcacgcccccagtgcagtcttattcgccag
gcaagctggagcgggctgagtgacgcctccagccacgagtccctgagcggccccctgatc
aagagtaacagcttgagcagcatgcggggccatacggagaaatccaaggaccttcggagg
gccaccctgaagaatctgggcgcccccggcaacgacagcggagacgctcacaagcccccc
agtggccgggtgctgcagcgcagcgaggtgtgcctctccaccttctccagggacttcgct
gagacagagggccgagagaggagctacagctgtcagcctggagacccaggcgagcaggga
ggcgggtacttgctggagcaggagagcgggggccgcgggaagaaggcggttgatgagaac
tgtaaccacgtggcgtcgtcggggcggagcctggcgggaaagctgcagcagctcctcacc
ccgaccaagcaccgggccacagtgcgccgcacagccagcgtggatgaccgccagcacagc
ggctccgcggggcccgtgagcagagcttccgagcagaggcagtcacgcaggggccacgtc
acggacaagctgctgagggccaaggagcggctgtacactgcagcctctgagagctccctg
tctgttggaagcgacttggaagtgtccgactcaacccccctgacctttcacgccaggaag
tcgtccgattccagtcaggaggtgccaggaatggaggtgctgatgtcgagctgttcattg
tgtcgcagttgtaactctctggtgtacgatgaggagatcatggctggctggacctccgac
gactccaatctcaactctagctgcccctactgctctggcagcttcgtccctctgctcaac
atggagttcagtgcccaaccgctagcgcccagttctgtgacgggctcgtcgagtgcggag
atctcgcttgtttctgacagtgtggtggagccccctgctgctcaggactgcttcctgcgc
cccttgcacaatgggctgagcgaggaggactctgcctcggactgcagcagccgcctgtct
gacgggagctccatgtcgttggtgcccagcagcgcagggggccccatccagggggtgacc
gtggcatacctgagcccgctggtccttcgcaaggagctggagagtctgctggaaaacgag
ggtgacggggtgctggcccagccgcagctcatcgacagccaccccatcatctactggaac
ctggtgtggtacttccagcgtcttgggctgcccagtaacctgctggcactgctgtccacc
tcgcagccaggctcccagctcacacagacctcccctgacgagagctgtgccgtgcgggtt
cgactcatgtgggataccctgaaccccgacgtggaccactggcccccgctctacatcctg
tggaggatgcacagcggggtgcccactcgctgtcacggctggcggagacacagccacccc
ttcaccctgggcttcctggaggaggtgctgcgctgggtcggcatgaacgaggtgcacaag
gccgtctccctcttcctggagactgtcggcactcagcccggacccccgagagtgcagagg
agtctatatcgagagattctcttcctaaccctggctgcaatgggcaaagacaatgttgtg
gctttcgataagaagtacaagactgcctacagccgtctgtgtggctccctggggaaggag
gaactgcacaagaacagagtccagccccccagcaccaaggcagtggactgccgcaaatcc
ttcctggtgccgctggagtgctga
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