Polyodon spathula (Mississippi paddlefish): 121312703
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Entry
121312703 CDS
T07273
Name
(RefSeq) general transcription factor IIH subunit 2-like
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03022
Basal transcription factors
pspa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121312703
09124 Replication and repair
03420 Nucleotide excision repair
121312703
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121312703
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121312703
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
121312703
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
121312703
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
VWA
C1_2
Motif
Other DBs
NCBI-GeneID:
121312703
NCBI-ProteinID:
XP_041100332
LinkDB
All DBs
Position
1:complement(3204393..3213974)
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AA seq
396 aa
AA seq
DB search
MDEEPERAKRWEGGYERTWEILKEDESGSLKATVENILFKAKRKRVFEPHGQVRLGMMRH
LYVVMDTSRTMEDQDLKPNRLTSTLKLLEYFVEEYFDQNPISQLGIITTKNKRAEKLTDL
SGNPKKHVADLKKAKDTICAGEPSLYNSLSLAVQTLRHMPGHASREVLVIFSSLTTCDPA
NVYELIKSLKALKIRVSVIGLSAEVRVCTVLTRETGGTYHVILDESHFKELLQYHVKPHP
ASSSSECSLIRMGFPQHTIASTCDQDCKPSFSMAHLDSSGSGPSLTLGGYYCPQCRAKYT
ELPVECKVCGLTLVSAPHLARSFHHLFPLEPFTETPLQDYQGQKFCQGCQGELKDQNVYM
CTSCQSVFCVECDLFIHESLHCCPSCIHNQPSPPGV
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagaacccgaacgagccaaacgctgggaaggaggctatgagaggacctgggaa
atccttaaagaagatgaatccggatccctcaaggcaactgtggaaaatattctgttcaag
gcgaagagaaaacgagtgtttgagccccatggacaggttaggcttgggatgatgcgtcac
ctgtatgtggtgatggatacttcaaggacaatggaagaccaggacttgaagcccaacaga
cttacaagcacactaaagctcttggaatattttgtggaagagtattttgatcagaaccca
atcagccagttgggaatcattaccacaaagaacaaaagggcagaaaagctgacagacctt
tctggaaacccaaagaagcatgtagctgacttgaagaaagctaaagataccatttgtgct
ggagaaccgtccctctataattcactcagtctagccgtgcaaactctgagacacatgccg
ggccatgctagcagggaagtgctggtgatatttagcagtctcacaacctgtgatccagcc
aacgtttatgaattgataaagagtctgaaggctcttaaaatccgcgtgtcagtgattggt
ctgtctgctgaagtgcgggtgtgcactgtcctgactcgggagactggcggaacataccat
gtcattttagatgaaagccacttcaaggagctgctacagtatcacgtcaagccccatcct
gccagctccagctcggagtgctccctcattcgaatgggttttcctcagcatacaattgca
tccacatgtgatcaagactgcaaaccatctttcagcatggcgcacctggacagcagtggc
agtgggccaagcctgacactgggagggtattactgccctcagtgcagagctaaatacacc
gaactgcccgtggagtgtaaagtctgcggtcttacgttggtgtctgcccctcacctggcg
cgctccttccatcaccttttcccgttagagcctttcacagaaacacctttacaagactac
caaggacaaaagttttgtcaagggtgccagggagaactcaaagaccagaatgtgtacatg
tgcacgtcctgccagagtgtgttctgtgtggagtgtgatctcttcattcacgaatcctta
cactgctgcccctcctgtatacacaaccagcccagccctccaggcgtctga
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