Polyodon spathula (Mississippi paddlefish): 121312743
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Entry
121312743 CDS
T07273
Name
(RefSeq) cadherin-12-like
KO
K06804
cadherin 12, type 2, N-cadherin 2
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pspa04515
]
121312743
Cell adhesion molecules [BR:
pspa04515
]
Cadherins
Major cadherins
121312743
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_FAT4_N
Cadherin_CELSR2_9th
Cadherin_2
Cadherin_4
Stevor
DUF443
Motif
Other DBs
NCBI-GeneID:
121312743
NCBI-ProteinID:
XP_041100405
LinkDB
All DBs
Position
3:complement(13762705..13868281)
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AA seq
794 aa
AA seq
DB search
MLTRNCLLLFLWFLFDKGLLTPLQSPPHRKLGKEHPGGIVGLLRNAQPSFQRVKRGWVWN
QFFVLEEYMGSDPQYVGKLHTDLDKGDTIVKYTLSGDGAGSIFTIDKTTGDIHALRRLDR
EEKPYYTLRAQAVDTETGRPLEPESEFVIKVQDINDNEPKFLDGPYTASVPEMSPVGTYV
QISATDADDPTYGNSARVVYSILQGQPYFSVDPKTGVIRTALPNMDREVKEQYQVLIQAK
DMGGQLGGLAGTTTVNITLADVNDNPPRFPKSIFHLRVPESSRVGSSVGRIKARDPDAGK
SAEIEYSIVPGDGGNMFDITTNDHTQDGILILKKPLDFETKKAYTFKVEASNAHLDHRFH
AFGPYKDTATVKINILDVDEPPVFTKPSYTMDVYEDTPVGIIIGAVTAQDLDAGSSPVRY
SIDWKSDLDSYFEIDPVEGTIATKELLDRENMAQHNISIVATKVNNPVLSNKVAVIVHVL
DVNEFPPEFSITYETFVCENSKTNQLIQTVSAKDRDLPPAGQKLFFKLPPEATAKQNFTV
YDYGNNTAGILTKQNGYSRRMQEIYFLPVVIEDSGYPVQSSTNTLTIRVCGCDTDGTLLS
CNVEAIFLPVGLSTGALIAILLCIIILLVIVVLYVALRRQKRKETLMTSKEDIRDNVIHY
DDEGGGEEDTHAFDMGTLRNPKVIKGNTFRRDVKPETETCPKPPISQESADIRDFIHQRL
QENDVNSSAPPYDSLATYAYEGDGSVAESLSSIESLAADADEGYNYLREWGPRFKTLAGI
FEEHESHLEKTDTL
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atgcttacaaggaactgcttgttgttgtttctttggttcctgtttgacaaaggtctcttg
acacccctgcagtcgccaccacatagaaaactgggaaaggaacatcccgggggcattgtg
gggctactgagaaatgcacaaccaagttttcaacgagttaaacgtggctgggtgtggaac
cagttctttgtcttggaggagtatatggggtcggaccctcaatatgttggcaagctacat
acagatctggacaagggtgacactatagtgaagtacactctctcaggagatggagctggc
tctatttttacaatcgacaagactactggggacattcatgccttaaggagacttgacaga
gaagaaaagccttactacactttacgtgctcaggctgtagatacagagactggcaggcct
ctagagcctgaatcagagtttgtcatcaaggttcaggatataaatgacaatgagcctaag
tttttggatggtccttacacagctagtgtaccagaaatgtctccagtaggaacttatgtg
cagataagtgctacagatgctgatgatccaacctatggcaacagtgccagagtagtatac
agtattttacaaggacaaccttacttctcagttgaccctaaaacaggagttataaggaca
gctttaccgaacatggatagagaggtgaaagagcagtaccaggttctcatccaggctaag
gatatgggcggacaattgggagggttagctgggacaaccactgttaacattactcttgct
gatgtcaatgacaacccacccagatttccaaaaagtatcttccaccttagagtgccagag
tcttctcgggtgggatcatctgttggaagaattaaagctcgtgaccctgatgctggtaaa
agcgctgagattgagtacagcatagttccaggagatggtggaaacatgtttgacattaca
acaaacgaccacactcaagatggaattcttatacttaaaaagccattagactttgaaaca
aaaaaggcatatactttcaaagtggaagcctcgaatgctcatctagaccatcggtttcat
gccttcggaccatataaagacacagctactgtcaagattaatattttggatgtggatgag
cctccagtattcaccaaaccttcttacacgatggatgtgtatgaagacacccctgttggt
attattataggggcagtgaccgctcaagacctggatgctggtagcagtcctgtaaggtat
tctattgattggaagagtgatttggacagttattttgaaattgatccagtggaaggaacc
atcgctacaaaggaactcttggaccgagagaacatggcacagcacaatatatccattgtt
gcaactaaagttaataatcctgtgctttccaacaaagttgcagtcatagtccatgtcttg
gatgttaatgagtttcccccggaattttcaataacgtatgagacttttgtatgtgaaaat
tctaagacaaaccagctaattcaaaccgtcagtgcgaaagacagagatctgccccctgct
ggtcagaaattattttttaaattacccccagaggccactgcgaaacaaaattttacagtc
tacgattacggaaataacacagctgggattctaaccaaacagaatggctatagtcgtaga
atgcaggagatctatttcctgcctgttgtaatagaagacagcgggtatccggtccagagc
agcacaaatactctgaccattagagtctgtggatgcgatactgatggcaccctcttatct
tgcaatgttgaagcaatcttcttaccagtggggctcagcactggggcactgatagcaatc
cttctatgcatcattatactcttggtgatcgtggttctctatgttgcgctcaggagacaa
aagaggaaagagacgttgatgacctctaaggaagacatccgtgacaatgtcatacactat
gatgatgaaggtggtggagaagaagatacccatgcttttgacatgggcaccctgaggaac
cccaaagtaattaaaggcaacacgtttcgaagggatgtgaaaccagagactgagacctgt
cccaagccacctatttcccaagaaagtgcagacatcagagatttcattcaccagcggctg
caggagaatgacgttaattccagtgcaccaccatacgactcacttgcaacatatgcctat
gaaggtgatggctctgtagcggagtctttaagctccattgagtcactggctgctgatgct
gatgagggttataattacctcagggagtgggggcctcgatttaaaaccctggcaggaata
tttgaagaacatgagtctcatttggaaaaaaccgacacactctaa
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