Polyodon spathula (Mississippi paddlefish): 121312746
Help
Entry
121312746 CDS
T07273
Name
(RefSeq) LOW QUALITY PROTEIN: ribonuclease 3-like
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121312746
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121312746
03009 Ribosome biogenesis [BR:
pspa03009
]
121312746
03036 Chromosome and associated proteins [BR:
pspa03036
]
121312746
Enzymes [BR:
pspa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
121312746
Messenger RNA biogenesis [BR:
pspa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
121312746
Ribosome biogenesis [BR:
pspa03009
]
Eukaryotic type
90S particles
RNase
121312746
Prokaryotic type
rRNA processing factors
121312746
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
121312746
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
dsrm
RM44_endonuclase
YcaO
Motif
Other DBs
NCBI-GeneID:
121312746
NCBI-ProteinID:
XP_041100409
LinkDB
All DBs
Position
3:complement(14775199..14832771)
Genome browser
AA seq
1326 aa
AA seq
DB search
MSFHPGRGCPRGRGASGQRGTPHNYRPQNLRQVAPVPPFHYDPQAAPSPGYSNFGSAGYM
PPRPDFIPYPPPMPPLGQNPTNQCPLRPPFPNPPVRQAFPGPPNFPPPPILNPTNSSLSG
SAASGQSTYHYMMPPPPLPHTSVSPSMPQQMSYQPPYSINYSQPPFPPPSFNAGYQPHSS
SFNTDQFRHANQYKAEKSQSERRSPERNRRPEEPRHKGYSYGSHGDRHRMDCPGERRDRG
RSPDRRRQESSRHRSDYDRGRTPPRHRSRERSRERHRHRESRRSVSCERQHRKDYKRPRS
RSSSRDRKRPRWEEERERRPDSQGSSREKNYTSVKNKEPEENQVERAEDDQDEDELLKPV
WIRCTHAENYYSKDPMDQVGDSTIVGTSKLRDLYDRFEEELVKRQERAKASRPQWEPPKT
KLDDDLDESSGDSECESDGGSSSCSSSSSDSDVFDVIAEIKRKKAHPDRLQEELWYNDRG
QMNDGPLCKCSAKARRTGIRHNIYPGEEHVKACRLMTNNAGRLYHYRITVSPPTNFLTDR
PTVIEYDDHEYIFEGFSLFSHTLLTNIPLCRVIRFNIDYTIHFIEEMAPENYCVKGLELF
SSYLFKDILELYDWNLKGPESENDTSICQKFHFMPRFVRFLPDGGKEVLSMHQVLLYMLH
SNKPLVPEEEIANMLQWEELEWQKYAEECKGMIVTSPGMKPSSVRIDQLDREQFNPDVIT
FPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVRQVDKQKLTQREEALQKI
RQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQCLKDLDKLIGYVFK
ERCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMYMRKKGINTLINI
MSRLGQDDPSPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQH
LAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEGGLEEARQLFGRLL
FKNEDLREVWLNYPQHPLQVQEPSTDRQLVETSPVLQKLTEFEETIGVLFTHVRLLARAF
TLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFVHFPDHHEGHLQLLRSSLVNNRTQA
KVAEELGMQEYAITNDKTKRPVALRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPR
LKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARIYTVAVYFKGKR
IGCGKGPSIQQAEMGAAMDALEKYNFPQMAHQKRFIERKYRQELKEMRREREQQEKESDE
TDEVRK
NT seq
3981 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtttcatcccggccgaggttgtccccgtggaaggggtgcgtctggacagcgtgga
acacctcataattacaggccacagaatctcaggcaggttgcacccgtgcctccttttcat
tatgatccacaagctgctccctcccctggctattctaactttggtagtgcaggttacatg
cctcccagacctgattttataccttatccacccccgatgcccccactgggacagaatcct
acaaaccagtgcccattgagacccccgtttcctaaccctccagttagacaagccttccca
gggccccctaactttcctccccctccaatcttaaaccctaccaacagctccttgtctggg
tcagcagcttcaggtcaaagcacctatcattatatgatgcctcctccaccactaccacac
acctctgtttcaccctccatgccacagcaaatgagctaccagcccccttattccattaac
tattcccagccaccctttcctccacccagttttaatgctggatatcaaccacactccagc
tctttcaataccgatcagttcagacatgcaaatcagtacaaagctgagaagtcacagagt
gagcgaaggtcaccagaaagaaaccggcgccccgaggagcccaggcacaaggggtacagc
tacggaagccatggtgacaggcacaggatggactgtcctggagaacgacgggatcgtgga
aggagcccagacaggaggcggcaggaaagtagccgtcacagatcagactatgaccgaggc
agaacaccacctcgccacagaagtcgggaacgaagcagggaaaggcatcgacaccgggaa
agcagacggtctgtatcttgtgaaaggcaacacagaaaagactacaagagaccaaggagt
cgttcgagcagtcgggataggaagcggcctcgttgggaagaggagagggagaggaggcct
gatagccagggctccagtagagagaagaactacacttctgtgaaaaacaaagaaccagaa
gagaatcaagtagaaagagctgaagatgatcaagacgaggatgagcttcttaagccggtg
tggattcgctgtacccatgctgagaattactactcaaaagaccctatggatcaggtgggt
gactctaccattgttggcacaagtaaactgcgagatctgtatgacagatttgaagaggag
ttggtgaagagacaagaaagagccaaagcatcaagacctcaatgggaaccaccaaagacc
aagttagatgatgatctagatgagagttcaggtgactctgaatgcgagtcggatggagga
agcagcagctgcagcagcagcagttcagactcggacgtcttcgatgtcattgcggaaatc
aagcgcaaaaaggcacacccagaccgcctgcaggaagaactgtggtacaatgatcgtggc
cagatgaatgatgggccattatgcaagtgcagtgccaaagccaggcggactggaatccga
cacaacatttatccaggggaagagcatgttaaagcgtgtcgtctaatgacaaacaatgca
ggaagactgtaccactacagaattacagtgtccccgcctaccaacttcttaactgaccga
cctactgtaatagaatatgatgatcacgagtacatctttgaaggattctctttgttttca
cacactctgcttactaatattccattatgcagagtgatccgttttaacatagattacacc
attcattttattgaagaaatggcaccagagaattactgcgtgaaaggactggagctgttt
tcgtcttatttatttaaagatatcttggagctgtacgactggaatcttaaggggcctgaa
agtgagaatgatacttccatttgtcaaaaatttcactttatgcctcgttttgttagattt
cttcctgacggtggaaaggaggtgctgtccatgcaccaggtgctcctgtacatgctgcac
agcaacaaacctttggttcctgaagaagagattgccaacatgctgcaatgggaggagttg
gagtggcagaaatatgcagaggaatgtaaaggaatgatcgtcaccagtcctggcatgaaa
cccagctctgttcgcattgatcaattggaccgggagcagtttaacccagatgtcattacc
tttcctataattgttcactttggaataagaccagcacaactgagctatgccggcgaccca
cagtaccagaagttatggaagagctatgtgaaactacgccatctgctggccaacagtcca
aaagtcagacaagtggacaaacagaagctaacacaaagagaggaagctctgcagaagatc
agacagaaaaacaccatgcgacgagaggtgactgtggaactgagcagccaggggttctgg
aaaacgggcatccgatctgatgtttgccagcatgcaatgatgttaccggtccttacacac
cacattcgctaccatcagtgccttaaggatttggacaagttgataggatacgtgttcaag
gaacgctgtcttctgcagctggccatgacccatccaagtcatcacttgaactttggcatg
aacccagaccatgccagaaactctctttcaaactgtggtattcggcagcccaagtatgga
gatagaaaagtccatcacatgtacatgcgaaaaaaaggtataaacacattaataaatata
atgtcgcggcttggccaggatgacccatcaccttctagaataaatcataatgagcgcctg
gagtttcttggtgatgccgttgtggagttcttaacgagtgtccacctctattatttgttt
ccaagccttgaagaagggggcttagctacgtatcgtacagctattgttcagaatcagcat
cttgctatgctagctaagaaactggagctggaccggttcatgctttacgcacatggacct
gatctgtgccgagagtctgatctgcggcatgctatggccaactgctttgaagcacttata
ggagcagtatacttggagggtggtttagaggaggccagacagctatttggacgtttgctg
tttaagaatgaggacctgcgggaagtatggcttaattatccacaacatccattgcaagtg
caggagcccagcactgatagacagctcgttgagacatctccagtcttacaaaagctgacg
gaatttgaagaaacaattggagtgctttttacccatgttcgtctcctggctcgcgctttc
acgttacgtacagtgggatttaatcatctgacgcttggccacaatcagaggatggaattc
ttgggtgactcaataatgcagttggttgccacggagtacttgttcgtccatttcccagac
catcatgaagggcacttgcagttactgcgaagttcattggtaaataacaggacccaagcc
aaagttgctgaagaattgggcatgcaggagtatgcaatcacaaatgacaaaacaaagaga
ccggtggctctaaggacaaagactctagcagatcttttagaatcttttattgctgcactg
tacattgacaaggacctggagtatgtgcataccttcatgaatgtttgttttttcccaagg
ttaaaggagttcatacttaatcaggactggaatgaccccaaatcccagctccaacagtgt
tgcttgaccctcagaacagaaggaaaggaaccagatattccactttacaagactttacag
actgtgggtccatcacatgccagaatatacactgttgctgtttactttaaaggcaaaagg
attggatgtgggaaaggaccaagtattcagcaagccgaaatgggagctgcaatggatgcc
cttgaaaaatataacttcccccagatggcacaccagaagcgcttcattgaacggaaatac
agacaggagctaaaagaaatgagacgggaacgggaacagcaagagaaagagtctgatgag
actgatgaggtcaggaagtaa
DBGET
integrated database retrieval system
