Polyodon spathula (Mississippi paddlefish): 121312749
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Entry
121312749 CDS
T07273
Name
(RefSeq) cadherin-20-like
KO
K06807
cadherin 20, type 2
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pspa04515
]
121312749
Cell adhesion molecules [BR:
pspa04515
]
Cadherins
Major cadherins
121312749
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
121312749
NCBI-ProteinID:
XP_041100413
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Position
3:14998196..15042871
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AA seq
797 aa
AA seq
DB search
MGEKHLLRSRLCLCLTILAHLLHATTEEPALKTRGENEKQLDETLLQSDETLKHHQRVKR
GWIWNQFFVLEEYTGSEPLYVGKLHSDMDRGDGSIKYILSGEGAGTMFTIDDNTGDIHAI
QRLDREVKAQYILRAQALQRRTGMPLEPESEFIVKIQDINDNEPQFLDGPYTASVPEMSV
IGTSVLQLTATDADDPTYGNSARVVYSILQGQPYFSVEPRTGIIRVTLPNMDREAKEHYE
VIIQAKDMGGQLGGLAGTTNVNITLSDVNDNPPQFAQKLYQMSVAESSPVGSIVGQVRAK
DLDEGINAEMRYTIIDGDGRDTFDISTDPTKQVGIITIRKPLDFEGKKSYTLKVEGANTQ
LDHRFLRMGPFSDVTIVHISVEDVDELPQFDSKFYYVEVPEDVEIGTVFQTVSAKDPDVS
NNSVRYSIERNSDPGRYFYIDITSGALMTARPLDREEVSWHNITVMAMEMNNPSQIGSVS
VTVKVIDVNDNAPELAKYSEAFVCENTKAGQLIQTVTAVDLDDPLGGQHFYYSLAPEAAN
NRNFTLRDNQDNTAWIVTRRGGFSQQEWSIYYLPILISDGEQPVQSSTSTLTIRVCSCDT
QGNAMSCTAEAYTLPVSLSRGALIAILACIFVLLVMVLLILSLRSQRKKPYLTDAEENVH
ENIVRYDDEGGGEQDTEAFDIAAMWNPRESVKFRQDMVPEIESLSRYVPQNYMGDSNVHG
YVLAKLYEADVDPSAPPYDSLQTYAYEGEGSVADSLSSLQSVTTNTDHDYDYLSDWGPRF
KKLSDMYGVSEMDNALW
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgggtgagaagcatttgctgagaagcagactttgcttgtgcttaacaattctggcacac
cttctacatgccacgactgaggaaccagcactgaagactagaggggaaaatgaaaagcaa
ttagatgagacgttgctgcagtctgatgaaacactcaagcaccatcaaagagtaaagaga
ggctggatctggaaccagttttttgttctggaagaatacacaggttcagagcctttgtac
gttggcaagcttcattcagacatggacagaggggatggatctatcaaatacatcttatca
ggagaaggagctggcactatgttcactatagatgacaataccggtgatatccatgcgatc
cagaggctggacagggaagtgaaagcccagtatattctacgggctcaggcactgcaacgc
cgcacaggcatgcccttggaacccgagtcagagttcattgttaaaatccaggacattaat
gataacgaaccccagtttctggatgggccctacacagcgtctgtacctgagatgtcagtg
ataggtacctctgttctgcaattgacagctacagatgcagatgaccccacttatggcaac
agtgccagggttgtctacagtatcctacagggacagccttacttttctgtggagcccaga
acaggtatcatccgagtgactctgccaaacatggaccgggaagccaaggagcattacgaa
gtgattatacaagccaaagatatgggcgggcagctgggaggcttagctgggactacgaat
gtcaatatcacccttagtgatgtcaatgataatccaccacaatttgcacagaagctgtac
cagatgagtgtggcagagtcatccccagttggttccatagtaggtcaagtgagggccaag
gacctggatgaagggatcaatgctgaaatgagatacaccatcattgatggggacgggaga
gacacatttgacatcagtactgatcccacaaaacaagttggcattataaccatcagaaaa
cctctagattttgaaggtaagaagagctacaccttaaaagtagagggagccaacacacag
ctggaccaccgtttcctgaggatgggtccattcagcgacgtaaccatcgtacacatcagc
gtagaggatgtagacgagctcccacaatttgattccaaattctattatgtggaggtgcct
gaagatgtggagattggtactgtcttccagacagtctctgccaaggacccagatgtgtct
aataactctgtgagatattccattgagaggaacagtgaccctgggagatacttctacatc
gacatcacatcaggggctctaatgactgcaaggcccttggaccgcgaagaggtctcctgg
cacaacattactgttatggctatggaaatgaacaacccctcacaaattggaagtgtgtca
gtcactgtgaaagtcatagatgttaacgacaacgcgccagagctggcaaagtacagtgaa
gcctttgtctgtgaaaacactaaagctggacagctgattcagacagtaactgccgtggac
ctagatgacccacttggaggtcaacatttctactatagcctggcacccgaggcagctaac
aaccgtaacttcacactcagagacaaccaagacaacacagcctggatagtgacccgacga
ggaggtttcagccagcaagaatggagcatttattacctaccaatactaatatcagatggg
gaacagcctgtgcagagcagtaccagtaccctgacgatccgtgtgtgtagctgtgacaca
caggggaatgccatgtcatgcactgctgaggcctacacgcttcctgttagcctaagcaga
ggagctctcattgcaattctagcctgcatttttgtgttacttgtgatggtcctgctcatc
ctgtccctgcggagccagaggaagaagccctatctgacagacgcggaggagaatgtacac
gagaacattgtgcgctacgatgatgaaggtggcggagagcaggacactgaggcctttgac
attgccgccatgtggaacccgagagaatctgtgaagttcaggcaggacatggtgccggaa
attgagagcctgtcccgctatgtgcctcagaactacatgggggacagtaacgttcacggc
tatgtgctggccaagctgtatgaggccgatgtggaccccagcgcgcccccctacgactcc
ctacagacatatgcctatgaaggtgaggggtccgtggcggattctctcagctccttgcag
tctgtcaccacgaataccgaccatgactatgactatctcagcgactgggggccccgcttt
aaaaaactgtctgacatgtatggggtttcagagatggacaatgctttatggtag
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