Polyodon spathula (Mississippi paddlefish): 121312755
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Entry
121312755 CDS
T07273
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03018
RNA degradation
pspa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121312755
09123 Folding, sorting and degradation
03018 RNA degradation
121312755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121312755
03041 Spliceosome [BR:
pspa03041
]
121312755
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121312755
mRNA degradation factors
5'-3' decay
Lsm complex
121312755
Spliceosome [BR:
pspa03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
121312755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
121312755
NCBI-ProteinID:
XP_041100418
LinkDB
All DBs
Position
3:15148219..15151222
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AA seq
91 aa
AA seq
DB search
MAATPVTNPSQLLPLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTEFEIT
PEGRRITKLDQILLNGNNITMLIPGGEGPEV
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgactcctgttacaaacccttcacagttgctcccgctcgagcttgtggacaaa
tgtatcggatctcgaattcacatcgttatgaagaatgacaaagagattgttgggaccctg
cttggatttgacgactttgtcaatatggtgctggaagatgtcacagaatttgagatcaca
ccggagggaaggaggataacaaagctggatcagatcttattaaatggaaataacatcaca
atgcttatacctggaggcgaaggtccagaagtatga
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integrated database retrieval system
