Polyodon spathula (Mississippi paddlefish): 121312784
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Entry
121312784 CDS
T07273
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
121312784
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121312784
Membrane trafficking [BR:
pspa04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
121312784
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
VPS8_N
zf_RING_Vps8
TPR_Vps41
TPR_VPS8_2
zf_RING_Vps8_fungal
zf-RING_Vps41
Beta-prop_WDR36-Utp21_1st
zf-RING_UBOX
PHD
WD40_CDC20-Fz
zf-RING_2
Beta-prop_WDR5
zf-RING_5
zf-C3HC4_2
WD40_Prp19
zf-C3HC4
EIF3I
Beta-prop_WDR3_1st
PHD_NSD
zf-RING_11
PWP3A-B_C
Beta-prop_THOC3
Cu
Clathrin
zf-C3H2C3
Motif
Other DBs
NCBI-GeneID:
121312784
NCBI-ProteinID:
XP_041100476
LinkDB
All DBs
Position
3:17008547..17044786
Genome browser
AA seq
1374 aa
AA seq
DB search
MSENEGDDLSSSDIFSGISLPEAEELDEKEYNIPQAEALPTLESILSEDVLCDHDVDLLL
SEELSQLTAMPEDSSSTNTEEDEERAAKDSATSEWIKEPPLPAVKQEAVLHHITLKGLSA
QVTSAANKVDAGTPTAMAVCGIIAIGTSNGLLLIFDSSQVLKLCLGSTSLGAQYGAISAL
SLNTDCTQIVSGFTKGQILQWDLETGKLLRTITSVLPLGTTVLNVKFTDDSSVAVCSDST
GSVFELSFKRSMGIKTCEARCLLSSDKGQVCCVEPLRIPEDFLGHPATQYLLVAMVSLKK
LLVISLKPVLQVIHASPFLKTDPYCVPVLAWHFMLIKECVDPVLAFCRGSSMTLFHVKCT
GESLECVKIMEANHPYDIVNVKWMNSRTLLLIDPLDKLHVLDRESQEELELLDLSGMQLI
HTSSFLRPLIPGEHISPTLAEIGEKATYQSVCTHGGETVLLGAKSVHVVSLRTWEERINF
LVKQDRFAEALGLAWVFFNGTAKAVFGLSGKKQNKQAMVANKVAELLLNYVEISLRRCPE
QGKLEIMEEHFQKTIPLCVTCCFKFNKMDLLFGEVYDKLNHNAVALGVLFECLEPYILTD
RLKDITPSVVKELVVYYENGDMLDALESLITHLDITTLDLHQIVLLTRKYKLFDALIYVY
NKGMNDFVTPIEEMIQAMENALKSENTDELGAVGNKILVYISCSLTGRAYPFGVISEDLV
PVVKTEVFSCLTRFHSKNADPDEGPHPYIRTLLKYNTREFLNVLALTFEDMQQYSQAVEF
LQIITDALLKVMLESVDFTPSQIGSLFTFLARQIAKTENALFVNMQLFDQVLDFLCNPED
GTRHTERQQALLELLQAGGAIYFDEDKLLSMAEKMQFYQICEFVYEERRLYTSIVGCYLK
DAARRDQVFGYINDIITRADLTNEEKIAFQNEVFCNIQELLTLSPNRTAMLILQKFQDSV
PLILETLQQDSKLLFDFLHGIFNPRVEQWPFKNASLLNHEFHEMYIELLCQNHSDQVLGF
LKLSDLYRPEEAVKIVQKHQVYDALAFLLEMQGNIQGAFSVLLEHMKSQLHNLTECGESA
VGQEVPAIHSCDTGLLQTVPSLLKQIIGLCQRASGTLDTQQKEELWFPLLDLMMSPAEYL
ESSLPDQVINSMKALMKDVLEGMAAYIPLTDILQRLIQDPIYSVGNYGEIKSIILGMLDT
FVYEKTLLEATQSLLNQDLHWSLCSLRATVTRGLTPAHKICGVCTQQYSKHRVGTEIIVF
SCGHVYHTACLQNSLSQQEEEQGEWACLKCLSANKKWTSVTPGKVGHETQVMELDHRQIT
SSNNLRRAFKNPSRLSILTELVRQNSDGFTLGGGTDLFQQADFQLKLAPPPLVD
NT seq
4125 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaatgagggagacgacctgtccagttctgatatattttcagggatcagcttg
ccagaggcggaagagctggatgaaaaggagtataacatccctcaagcagaagcactacct
actctggagagcatcttaagtgaggatgttctctgtgaccatgatgttgaccttcttctt
tccgaggagctttcccagctgacagcaatgcctgaggacagcagcagcactaacactgaa
gaagatgaagagcgagctgccaaagattcagcaacttctgagtggataaaagagccacca
ttgccagccgtcaagcaggaggcagtcttgcaccatatcactctaaaagggctgtctgcc
caggttacctcagccgcaaacaaagtagatgcaggaacaccgactgcaatggctgtctgt
gggattatagcaattggaacatcaaatggactgctcctaatctttgactctagtcaggtg
ttgaagctgtgcttgggtagtacaagtcttggtgcccagtatggagccatctcagcactc
agccttaatactgactgcactcagatagtcagcgggtttacaaaaggacagattcttcaa
tgggatctagaaacaggaaagctcctcaggaccattaccagtgtgctgcctctcggcact
acagttctcaatgtcaagttcacagacgactcatctgtggctgtatgcagtgacagcaca
ggttcagtgtttgagcttagtttcaaaagatctatgggaatcaaaacatgtgaagcacgc
tgtcttttgagcagtgacaaggggcaggtgtgctgtgttgagcctcttcgcatcccagag
gatttcttaggacatccagcaacacagtacttattagtagccatggtttccttaaaaaag
cttttggttataagtcttaaaccagtgctccaggtgatacacgcttctccctttctaaag
actgacccgtactgcgttccagtcctggcctggcacttcatgttgatcaaggaatgtgtt
gatccagtgttggctttctgcagaggctcctctatgacactgtttcatgttaaatgcact
ggggaaagcctggaatgtgtcaaaattatggaggcaaatcatccatatgacatagtaaac
gttaagtggatgaattcgcggactctgctgctaattgaccctcttgacaagctgcatgtt
ttggatcgagagagccaagaggagctggagctgttggacctgtctggcatgcagcttatt
cacaccagcagttttctcaggcccttgattcctggagagcacatcagtccaacactggct
gaaataggagagaaggccacgtatcaatctgtgtgcactcatggtggggaaactgtttta
ctgggtgctaagtcggtgcatgtcgtgtctttaagaacttgggaagagcggatcaacttc
cttgtaaaacaagatcgttttgcagaagcactgggtttggcctgggtgtttttcaatgga
actgccaaagctgtttttggtctttctggtaaaaaacagaacaagcaagctatggtggca
aataaggtggctgaactgctgttaaattatgtagagatatctctgaggaggtgtcctgaa
caaggcaagttggagataatggaagagcactttcagaaaacgataccactttgtgtcacc
tgctgcttcaaattcaataaaatggatctgctgtttggggaggtttatgataagctgaac
cacaatgctgtagcactgggggtgctgtttgagtgccttgagccctacatacttactgac
aggctaaaggacatcacaccttcagtagtgaaagaactggttgtgtattatgagaatgga
gacatgctagatgcccttgagtcacttataactcacctggacataacaaccctggatcta
caccaaatcgttctgttaacaaggaaatataaactttttgatgctttgatctatgtttac
aataaaggaatgaatgatttcgtcacgcccatagaggaaatgatacaagctatggagaat
gctttgaaaagtgaaaacacagatgaacttggagctgttggcaacaagattcttgtctac
atcagttgcagtttaactggcagagcatatcctttcggagtcatttctgaagatcttgtt
cctgttgtcaagactgaggttttcagttgcctcacaagattccattcaaagaatgctgat
ccagatgaagggccgcacccttacatccgcacacttctcaagtacaacacccgggagttc
ctcaatgttttagccctgacatttgaggacatgcagcagtattcacaagctgttgaattt
ctgcaaataattacagatgccttgcttaaggtcatgctggagagtgttgattttacacca
tcgcagatcggctctctctttactttcttagctcgtcagattgccaaaactgaaaacgcc
ctttttgtgaacatgcagctttttgaccaggttcttgattttttgtgtaatccagaggat
gggaccaggcatacagaaagacagcaggccctgctggaacttttgcaggcagggggtgct
atttactttgatgaagacaagctgctttcaatggctgagaaaatgcaattctaccaaatc
tgtgagtttgtgtatgaggaaagacgtctttacacgagcattgttggatgctacctgaaa
gatgcagcaagaagagatcaggtatttgggtacataaatgacatcatcactagagctgat
ctaacaaatgaagaaaaaatagcatttcagaatgaggtattttgtaacatacaggaactc
ttgacactgagccccaatcggactgcaatgctgatactgcagaaatttcaagacagcgtt
cctttaatcttggaaacactacagcaggattccaaacttctctttgactttctgcatggc
attttcaatccaagagtggagcaatggccttttaaaaacgccagcctgttgaatcatgag
ttccatgaaatgtatattgagctactgtgccagaatcattctgaccaagtgctgggcttc
ctcaagttgtcggacttatacaggccagaggaggcagtcaagattgtgcagaaacaccag
gtgtatgatgctttggcatttctcctagagatgcaagggaatatacagggagcattttct
gtcctcttagagcacatgaagtcacaactacacaacctaacagaatgtggagaatcagcc
gtgggacaggaagttccagcaattcactcctgcgatactggattgctacaaactgtacct
tcattgctgaagcagatcattggtttgtgtcagcgagcctctggcacactggacacacag
cagaaagaggaactttggtttcctcttttggatttaatgatgtcaccagcagagtactta
gagtcttcactaccagatcaagtaataaacagtatgaaggctctaatgaaagatgtgcta
gaaggcatggcagcttacatcccccttacagatatactgcaaaggcttattcaagatccc
atttacagtgtgggcaactatggagagataaagagcatcatcctaggaatgcttgacaca
tttgtttatgagaagacgttattagaggcaacacaaagcctgctgaaccaggatctgcac
tggtccctgtgcagtctgagagcaacagtcaccagagggcttactccggcccacaagatc
tgtggagtctgcacacagcagtacagtaagcaccgagtagggacggagatcattgttttt
agctgtggccatgtttatcacacagcttgtctacagaacagtctcagtcaacaagaggaa
gagcaaggggagtgggcctgcttgaaatgtttgtcagctaacaagaagtggacatcagtt
acacccgggaaagttggtcatgaaacacaggtgatggaactggaccacagacagattaca
tcatcaaataatctgagaagagcatttaaaaatccttcaaggctttctattttaacagaa
cttgtgaggcaaaactcagatggcttcacattgggaggtgggactgatctcttccagcaa
gcagattttcagctgaaactcgctccacctcctttagtagactaa
DBGET
integrated database retrieval system
