Polyodon spathula (Mississippi paddlefish): 121312824
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Entry
121312824 CDS
T07273
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3-like isoform X1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121312824
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121312824
03036 Chromosome and associated proteins [BR:
pspa03036
]
121312824
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
121312824
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
121312824
PBAF complex
121312824
GBAF(ncBAF) complex
121312824
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
121312824
NCBI-ProteinID:
XP_041100557
LinkDB
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Position
3:complement(19741188..19808818)
Genome browser
AA seq
512 aa
AA seq
DB search
MGKRVPFSVELNGCKDGNRGCHGGRSSSVRGCPLELECPIKGPPWALQDHHMEGVPLFAL
GCQTQSWSPQESARPPPSRLNNSRQHRTEPETPRGGKWQTRFSLRGFQGITEGTGCFARS
GSWVTFTDMHPSKHCSLGYHIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPM
KQKRKLRLYISNTFNPAKPDADDSDGSIASWELRVEGKLLDDPSKLKRKFSSFFKSLVIE
LDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDVSVRCTLLLMLDYQPPQFKLDPRLAR
LLGIHTQTRSAIIQALWQYVKTNKLQDSHEKEYINCDKYFQQIFDCPRLKFSEIPQRLTN
LLLPPDPIVINHVISVDPNDQKKTACYDIDVEVEDPLKGQMNSFLLSTANQQEIASLDNK
IHETIESINQLKIQRDFMLSFSKDPKGYIQDWLKSQSRDLKVMTDVVGNPEEERRAEFYQ
QPWSQEAVNRYFYCKIQQRRQELEQALAVRNT
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atggggaaacgtgtcccattttcagtggaattgaacgggtgcaaagacgggaatagagga
tgccacggtggtagaagcagcagcgtccggggatgccctctggagctcgaatgccccatc
aaggggcccccatgggccctccaggaccaccatatggagggagtccctctgttcgccctg
ggatgccaaacacagtcatggagcccacaagaaagcgcccggccacctcccagcaggctc
aacaacagcaggcagcacagaaccgagccagaaacgccaagaggaggaaaatggcagaca
agattctccctcagaggattccaggggatcacagaaggaacagggtgttttgcaagatca
ggctcgtgggtgactttcacagacatgcaccccagtaagcactgcagtttaggatatcat
atccgtgagttggttccagagtcccaggcctacatggatctcctggctttcgagcgaaaa
ctggaccaaactattatgaggaaacgcgtggatatccaggaagccctgaagagaccaatg
aagcaaaagcgtaagctgaggctgtacatctccaatacttttaaccctgcaaaaccagac
gctgacgactctgatggcagcattgcttcctgggaactgcgagtggaggggaaactactg
gatgatcctagcaaactgaagaggaagttctcctcattcttcaagagcctggtgattgaa
ttggacaaggacttgtacgggcctgacaaccacctggtggagtggcacagaaccccaacc
acccaggagactgacggcttccaggtgaagcggcccggtgatgtcagcgtgcgctgcact
ctgctgctgatgctggactaccagcccccccagttcaagcttgacccaaggctggcccgg
ttactggggatccacacccagacacgctccgccatcatccaggcactgtggcagtacgtc
aagaccaacaagctgcaggactcccacgaaaaggagtacatcaactgtgacaagtacttc
cagcagatcttcgattgcccaaggctgaagttctctgagatcccccagcggctcactaac
ctgctgctgccccctgaccccatcgtcatcaatcatgtcatcagcgtggacccgaacgac
cagaaaaagacggcttgctatgacatcgatgtggaggtggaggaccctctgaaaggccag
atgaacagcttcctgctctccacagccaatcagcaggagattgcatcactggacaacaag
attcacgagacaatcgagtccatcaaccagctgaagattcagagagacttcatgctgagt
ttctccaaggaccccaagggttacatccaggactggctcaaatcccagagccgggacctc
aaggtgatgacagatgtagtggggaacccagaagaggagaggagggcagagttctaccag
cagccctggtcccaggaggcagtcaaccgatacttctactgcaagattcagcagcgcaga
caggagttggaacaagcactggccgtgcgcaacacctaa
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