Polyodon spathula (Mississippi paddlefish): 121312874
Help
Entry
121312874 CDS
T07273
Symbol
xrcc4
Name
(RefSeq) DNA repair protein XRCC4 isoform X1
KO
K10886
DNA-repair protein XRCC4
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
121312874 (xrcc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121312874 (xrcc4)
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
121312874 (xrcc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRCC4_CC
XRCC4
XRCC4_C
XLF
PAXX
Taxilin
TRAPP14_N
Motif
Other DBs
NCBI-GeneID:
121312874
NCBI-ProteinID:
XP_041100682
LinkDB
All DBs
Position
1:3989044..4125314
Genome browser
AA seq
336 aa
AA seq
DB search
MDTSVRRIEVSSEPGKIYFLRITWEEDLGSGFSVDLCDGQSAWSGKVSEEEISKEAQEME
MKRDIYVDELCQALTAGGKQTNNYSFDLSRDPADSHTLHFSYEKVLKDVFFKLGSAELHT
ISKPIEVIKELINHGLDRSSELQARNEHLLGENERLGRERDYVTEELKKYVQAKEVLEQD
LYTRFALVLNEKKAKIRNLQEKLKQAQEEVESELQHRGDTSPVESKAPAEQDYEGSTDEE
SKENENPRPSTSARVKRGHTPLDDSLHDVTDVAPTRKRRQRNQRGEKDAGKEAQEPQEKG
RSGSTQQKSSGSSQPPKEFAAAARSTPDPEDLFDDI
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atggacacaagcgtgcgcaggattgaagtttcatcggaaccagggaaaatctatttcctg
agaataacctgggaagaggatcttgggtcaggtttcagtgtggatttgtgtgatggacag
tcagcttggagtgggaaagtgtctgaagaagagatttccaaagaagcccaagaaatggaa
atgaagagagacatttatgttgatgagctctgtcaggctctgactgctggaggaaagcaa
actaacaactacagttttgatctctccagagatcctgcagacagccacaccctgcatttc
tcttatgagaaagtcctgaaagacgtatttttcaaacttggatccgctgagctgcatacc
atctcaaagcccattgaagtcattaaagagctgattaaccacggactcgaccgcagcagc
gagctacaggccaggaatgaacacctgctgggagagaacgagaggctgggacgagaacga
gactacgttactgaagagttgaagaaatacgtccaggccaaggaggttctggagcaggat
ctgtacactcgctttgccctggtcctcaatgagaaaaaggccaagataagaaatttgcag
gagaagttgaaacaagcacaagaagaggtggagtcggaactgcagcacagaggtgacaca
tctcctgttgagagcaaagcgccagcagagcaagattatgagggaagcacagatgaagaa
agcaaagagaatgagaatcccagaccttcaacgtcagccagagttaaacgtggccacacc
ccacttgatgacagtttacatgatgtcactgacgtagcacccacccgcaagcgccgacaa
cgaaaccaaagaggtgaaaaggatgctgggaaagaagcccaagagccacaggagaaagga
aggtcgggctccacccagcagaaatcaagtggcagcagtcagcccccaaaggaatttgca
gccgcagccaggagcaccccagacccagaagacctctttgatgacatctag
DBGET
integrated database retrieval system
