Polyodon spathula (Mississippi paddlefish): 121312970
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Entry
121312970 CDS
T07273
Name
(RefSeq) neurobeachin-like protein 2 isoform X1
KO
K23286
neurobeachin-like protein 1/2
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121312970
Membrane trafficking [BR:
pspa04131
]
Endosome - Lysosome transport
Others
Others
121312970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4800
Beach
NBCH_WD40
DUF4704
PH_BEACH
Neurobeachin
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
WDR55
Beta-prop_Vps41
EIF3I
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_LRRK2
GRAM
Motif
Other DBs
NCBI-GeneID:
121312970
NCBI-ProteinID:
XP_041100944
LinkDB
All DBs
Position
3:complement(30820929..30944955)
Genome browser
AA seq
2789 aa
AA seq
DB search
MASKERLYELWMLYFNKKDLIYLQQWLEAFVTSFEKIIDVNSLDPRRPEECASEIPLLPR
DLLQVLSTRLSHSTQCLSSAQEKEEEESGVGQALLVIKFLIIICRNLENIEASQTPGFIY
ETMRLLSFCITELKSVAGEHGPLESVVLCGIHLCECVFDPYQTWRRQLTGEVVSVQERSK
YKFSPVSLPEEFTAFFHESFKDSENLPEILRVRLVHLYGAIISGCKRNALLVIIPSSVGD
LMGVLSSCCCTGNQAMKDPRLLQLTLKCLTAMIHLLHASNPDQRQVDIRTVLDSYFQVLN
SDRLGAGAGAGAGAGQGEAEARDWEDRLITLRTSMLSAIPEMLNCADRPVLQAIFLNNNC
FEHILRLIQNSKLYVSSRCKMECSGACDLTSQLLTEIDINQVFEKGPDSITVHALKVLTA
IMTSSPSAKEVFKERIGYSHLYDVLQSQGQPTRRLLQELMNMAVEGDHTQVPAVRINNEQ
PLLLLVQWIPELTSRDLQVLLSDWLGQACGGTLRDRTTAVQAGLVRALLDVLSDHHRLDR
KCADQLIRLLQSLGSLSLPPGELKRLLLLLRPDSEAPGATHPYSDRMVQALSAMAGHEGV
DSALQYFDLTHCMAGIMVPAIHRWPGYGFSFHAWLCLNMQRPHGLAPQRRLGKVPRRKQL
YSFFTASGTGIEAFFTAEGMLVVAVCTKKDYMTVALPDVSFSDSAWHSVDIVHIAGRRPF
GQNLVNIFVDGLLRKSAQLRVPSLSEAFTSCCIGSAGHRTTTTTTTPTLPSPQHPPDSTF
PSHAPTLSRSQSFPASFSGPRSQDCLVHTIPAGNQDAEWGTPTSLGGMLGTAFVCHEALQ
PAQVKALHNAGPNSVSPFKPDGEMLDLNSKLLLCYTPKACKNHICLDLSPHHQYDGRLTG
HKVVNWDVKDVINCVGGMGVLLPMLEQVGCKVEDSQTLQETTDLVGPELTSSRNTPSMLL
PLGKSSEGRLERNSVAAFLLMVKNFLRHHPVNQESLVQCQGPAIMGALLQKVPSQLIDMN
VLMACQFLIEQMCSEGNNVLLHYLYQHLLFDFRIWSRGDFAVRLGHIQYVSSIIKDNKQR
IRKKYGVQYILDSIRTHYGGEKDGAVPADGVRTVQTSLFQLIREFLSRAVAPEELQSILS
YAAAVQDEQQVCGVLEVIHGLLRGGPTREQLFGLLFDPGHIEVLYSLLLQKKYSDELRER
VFKILYKILKFDKVPERSKHRVKLKDIGYQGLISYLNEVPVSMSLIRCLSEQVLVADVNP
NYRDLIAVVYLSHRADLTVRLDVCRKLFHLIYSNLDSVRQLARQAGWQDTLTMLYVKESY
KSRASSFSSSINSDTLDLRRQDSSMLENPREAEAKGIGTGGELPDVFLPFGYESPDVDVS
EGFSALSLSPGNRSCPQRMKIKSCGNSFDFQDVTSHSSSNTIDIPGAQEEELLYFPFSPF
GSSPFELGLELASTGSLATAESGNHTPVSQADTPSPLEAFKPFPGMRVRKSSSLSNVLDE
SSFQEPQPGDNTSNTSNPQQTPEEELCNLLTNIVFSVTWRGVEGSDDAVWKERGQVFSVL
TKLGSSCELVRPPDDIKRSLLEMMLESAFSDIKDSTGATLPGHIQNVIKLLRLLQDFLFA
EGHTNQALWSEKIFEGVVNLLDKLQAWYYPVNGATDMRDIPQIGLRIITGYIQQQKTQVC
AMACVKLHSLLQTVMSLQTEEVCFLLGRLGGPLSHSLAAGHADSFTYLVPIMRTLLDQHY
EVLQLQHLLPNMPPTNGSATLFEDLQNYCSTVEWQTFIEKHIQPVMAQYEDDTFGKSHDL
MSNFWNSCFDALMSSSLRREKEKANSRTKFQELIVEPYLKRMRSENLRYANMLKQINNHH
SAVLRQWRSLRRLLTCQRGAWAERKEVEVRWKLSSAETYSKMRLKLVPNYSFDSHSVASA
LRDNMGADHLHSPTESIPLAVAKEAKVSEMEDDQLGDEDLVFLDNQVDEEEQNQKEKLVI
SEDCELITIIAVIQGRLEVTTQHIYFYDGSTEKEETEEGIGLDFKRPLSQLREVHLRRYN
LRRSALELFFIDQAHYFINFKKKVRNKVYSRILGLRPPNLFYFGSRSPQELLKASGLTQK
WVFREISNFEYLMQLNTIAGRTYNDLSQYPVFPWILCDYSSDTLDLDNPDIFRDLSKPIG
VVNSRHAKDVKEKYESFEDSTGTIDKFHYGTHYSNAAGVMHYMIRSEPFTTLHIQLQSGR
FDCADRQFHSVHAAWQARMENPVDVKELIPEFFYFPEFLENMNGFDLGSLQVSLDKVHDV
VLPKWAESREDFIRKHRKALECEHVSAHLHEWIDLIFGYKQRGPAAVEALNVFYYCTYEG
AVDLDAIADETERKALEGIISNFGQTPCQLLREPHPPRLSAENAMRRLARFENNPLNLLD
HLSQLKAFVESISDNVSLVQAVVPKNQARSFITQGYPDLLVTVSANGLLGTHSWLPYDKN
IANYFSFSKDPTVSNPKTQRFLSGPLSPDVELTSKILVVSHDGKLLFSGGHWDNSLRVTA
LAKGKVVGQLCRHIDIVTCLALDLCGIYLISGSRDTTCMVWQVQQQGGFSCGLAPKPVQV
LYGHNDEVTCVAISTELDMAVSGSKDGSLIVHSVRRGQFMRTLQPACERSLPVTISDLVV
GLEGHIVTQTILQGRSTVKDKFSLHLYSINGKLLASVVLEQQVSAMCLSQEHVILGTVQG
SLCIRDLYSLKLVMSPLALKVSVHSVSITKENSHILVGLGDGKLIVVGAGQPSEVKTGQF
TRKLWGSKRRITRISSGETEYNPTESAEK
NT seq
8370 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgaaggaaagattatacgaactctggatgctgtacttcaacaagaaggacctt
atctacctgcagcagtggctggaggcatttgtgacctcatttgagaaaatcattgatgtc
aactccttggatcccaggcggccggaggagtgtgcctcggagatccccctgctcccccga
gacttgctgcaagtcctgagcacccggctttcccacagcacccaatgcctgagcagcgcg
caggagaaggaggaggaggagagtggagtgggacaggccctgctggtcatcaagttcctt
atcatcatctgcagaaatcttgagaatattgaagctagccaaactccaggcttcatctac
gagacaatgagacttctctctttctgcatcactgagctgaagagcgttgcaggggagcac
ggccccctggagtcggtggtcctgtgtggtatccacctgtgtgaatgtgtgttcgacccc
taccagacctggaggaggcagctgaccggggaggttgtgagcgtacaggagaggagcaag
tacaagttttcacccgtctcgctgccagaggagttcacagcatttttccacgagagcttc
aaggacagtgagaatctgccagagatcctgagggtgcgattggttcatctgtacggtgcc
atcatcagcggctgcaagaggaatgccctgctggtcatcatcccctcatcagtgggtgac
ctcatgggggtcctcagttcctgctgttgcacaggtaaccaggcgatgaaggacccccgg
ctgctgcagctgaccctgaagtgcctgactgccatgatccaccttctgcacgccagcaac
ccggaccagcggcaagtggacatcagaaccgtgctagacagctacttccaagtcctcaac
tcagaccgccttggcgcaggggctggggctggggctggggctgggcagggggaggcggag
gcaagagactgggaggaccggcttatcaccctccgcaccagcatgctcagtgccatccca
gagatgttaaactgcgctgatcgtccggtccttcaggccatatttctgaataacaactgt
tttgagcacattctgagactgatacagaacagcaagctctatgtgagcagtaggtgtaag
atggagtgcagtggtgcatgtgatctcacctcacagttactgacagaaattgatatcaac
caggtgtttgagaaaggccccgactccatcactgtccatgctctcaaagtgctcactgcc
atcatgaccagctctccgtccgcaaaggaggttttcaaggagaggattggctactctcac
ctgtatgacgtgctgcagagccagggccagccaaccaggcgactcctccaggagctcatg
aatatggctgtggaaggagaccacacacaggttccggctgtgcggatcaacaatgagcag
cctctcctcctgctggtgcagtggatccctgagcttacctcccgtgacctgcaggtgctg
ctctctgattggctgggacaggcttgcgggggcacgctgcgcgaccgcaccactgcggtg
caggcaggactcgtgcgtgctctcctggacgtgctctctgaccaccaccgcctggacagg
aagtgtgcagaccagctcatcaggctgctgcagtcactgggatccctttctttaccccct
ggggagctcaagcgcctgcttctgctgctgaggccagattcggaggccccaggagccacg
cacccctactccgaccgcatggttcaggccctgtctgccatggctgggcacgagggggtg
gacagcgccttgcagtacttcgacctgacacactgcatggccggcatcatggtccctgct
attcatcgctggcccggctatggcttctccttccacgcctggctctgcctcaatatgcag
cgtccacacgggctggccccacagcgcagactgggcaaagtaccacgcaggaaacagctc
tacagtttcttcacagcgagcgggactgggatcgaggctttcttcacagctgagggtatg
ttggtggtggcggtctgcaccaagaaagactacatgaccgtcgctttgcccgatgtgtcc
ttcagtgactcggcctggcactcggtagatattgtgcacattgccgggcgtcgccccttc
ggtcagaacctggtcaatatctttgtagatggactgctgcgcaagtctgctcagctcaga
gtcccgtccctcagtgaggccttcacctcctgctgtattggctctgccgggcaccgaacc
accacaacaacaacaacccccaccctgccctccccccagcaccctccagactccaccttc
cccagccacgcacccaccttgagccgctcccagtccttcccagcctccttctctggaccc
cgctcccaggactgcctggtccacaccatccctgcggggaaccaggatgcagagtggggg
actcccacctccctggggggcatgctgggcactgccttcgtctgccacgaggccctgcag
cctgcccaggtcaaggctctacacaacgcaggacccaacagtgtgtcccccttcaagcca
gatggggagatgttggacctcaacagcaaactgctgctctgctacactccaaaggcttgt
aaaaaccacatctgcctcgacctgtctcctcaccaccagtacgatggcagactgactggg
cacaaagtggtcaactgggatgtcaaggatgtgataaactgcgtgggagggatgggtgtg
ctactgcccatgctggaacaggtgggctgcaaggtggaggattctcagaccctgcaagaa
accacagacctggtgggacccgagctcacctcctcccgcaacacccccagcatgctgctg
ccgctgggcaagtcatcagagggcaggctggagcggaacagcgtggccgccttcctgctg
atggtgaagaacttcctgcgacaccatcctgtcaatcaggagagcctggtgcagtgtcag
gggccagccatcatgggggcgctgttgcagaaggtgccaagccagcttatagacatgaac
gtgttaatggcatgccagttcctgatagagcagatgtgcagtgaggggaacaacgtcctg
ctgcactacctctaccaacacctgctctttgacttccgcatctggagccgtggcgacttc
gctgtccgcctaggacacattcagtatgtatcctccatcatcaaagacaacaagcagagg
atccgcaagaaatacggagtgcagtacatcctggactccatcaggacgcactatgggggt
gagaaggatggtgcggtcccagcggatggtgtgcggacggtgcagacttctctcttccag
ttgatccgagaattcctgtcgcgggctgtggctccagaggagttgcagagcatactgtcg
tatgcagccgctgtccaggacgagcagcaggtgtgcggagttctggaggtgatccacggt
ctgctgcgtggaggccccacgcgggagcagctcttcggactgctcttcgacccgggccac
attgaggtgctatactcactcctcctgcagaagaaatacagcgacgagctgagggagagg
gtcttcaagatactgtataagatcttgaagtttgataaggttcccgagaggagtaagcac
cgtgtgaagctgaaggacattggctaccagggcctgatcagctacctgaacgaggtccca
gtctccatgtctctcattcgctgtctctcagagcaggtcctcgtcgcagatgtgaacccc
aactaccgggatctgatcgctgtggtgtacctgtctcacagagcggacctcactgtcagg
ctggatgtctgtcgcaagcttttccacctcatctactcaaacctggacagtgtgcgtcag
ctggcacggcaggctggctggcaggacactctgaccatgctgtatgtgaaggagtcgtac
aagtctcgggcatccagcttctccagctccataaacagcgacacactggacctgcggcga
caggactcttccatgctggagaaccctcgggaggcagaggcaaagggaattggaacgggg
ggagagctgcccgacgtcttcctgcccttcggctatgagtcccccgacgtggatgtctct
gagggcttctcggccctctctctgtccccaggcaacagaagttgcccccagaggatgaag
ataaagtcctgcgggaactccttcgacttccaggacgtgaccagccactcctcctccaac
accattgacatccctggggcccaggaggaggagttgctgtacttcccgttctctcccttt
gggtcctccccatttgagctgggcctggagctggccagcacaggctcgctggccactgca
gagagcggcaaccacaccccagtcagccaggctgacaccccctcccccctggaggccttc
aaacccttccctggcatgagggtacgcaagagctccagtctgtccaacgtgctggatgaa
agcagcttccaggaaccccagcctggggacaacacctccaacaccagcaacccccagcaa
accccggaggaggagctatgtaacctgctcactaacatcgtgttctctgtgacatggcgt
ggggtggaaggcagcgacgacgctgtctggaaggagcgtgggcaggtcttttccgtcctc
accaagctgggctcgtcttgcgagctcgtccggccacccgacgacatcaagcgcagcttg
ttggagatgatgctggagtctgccttttcagacatcaaggactccacaggggccacgctg
cctggccacatccagaacgtgatcaagctgctccgccttctgcaggacttcctcttcgct
gagggccacaccaaccaggcgctctggagtgagaagattttcgaaggtgtggtaaatctg
ctggacaagctgcaggcctggtactaccctgtgaatggagccacagacatgagggatatt
ccccagatcggcctgcgcatcatcactggctacatccagcagcagaaaacacaggtgtgt
gcgatggcctgtgtgaagctgcacagtctcttgcagacagtgatgtctctgcagacggag
gaggtctgcttcctactggggaggctgggcgggccgctctctcactcgctggcagctgga
catgcagattccttcacttacctggttcccataatgagaaccctgctggaccagcactac
gaggtgctgcagctgcagcacctcctgcccaacatgccccccaccaatggcagcgccacc
ctgtttgaggacctgcagaactactgcagcaccgtcgagtggcagacattcatcgagaag
catatccagcctgtcatggctcagtatgaagacgatacgtttggaaagagccacgacctg
atgtctaacttctggaactcttgttttgatgcgctgatgagcagctctctgcggagagag
aaggagaaggccaatagcaggaccaagttccaggagttgattgtggagccctacctgaaa
aggatgcgctctgagaacctgcgctatgcaaatatgctgaagcagatcaacaaccaccac
agtgctgtgctgcgacagtggagatccctgaggagactgctgacctgccagagaggggcc
tgggcagagaggaaggaggtggaggtgaggtggaagctgtcgagcgcagagacctactcc
aaaatgaggctgaagctggtccccaattacagctttgattctcactctgtggccagcgct
ctgcgggacaacatgggtgcagaccacctgcacagccccacggagtccatcccactggcc
gtggccaaggaggctaaggttagtgaaatggaggacgaccaactgggagatgaggacctg
gtctttctggacaatcaggtggatgaggaggagcagaatcagaaagagaagctggtgatc
tcagaggactgtgagctcatcaccatcattgccgtgatacagggccgcctggaggtcacc
acacagcacatctatttctacgatggcagtacggagaaggaggagactgaggaaggaatc
gggttagatttcaagcggcctctatcccagctgagggaggtgcacctgcggcgctacaac
ctgcgcaggtcagccctggagctgttcttcatcgaccaggcacactacttcatcaacttc
aagaagaaggttcgaaacaaagtgtactctcggatcctgggtctccgccctcccaatctc
ttctactttgggtctcgctcgcctcaggagctgctcaaggcatctgggctcacacagaaa
tgggtgttcagggagatctccaactttgagtacctgatgcagctaaacaccatcgctggc
aggacctacaatgacctctcccagtaccctgtgttcccgtggatcctgtgtgactacagc
tccgatactctcgatctagacaaccctgacatcttccgcgacctctctaaacccatcgga
gtggtcaacagccggcacgccaaggacgtgaaggaaaagtacgagagttttgaggactcc
acaggcaccattgataaattccactatggcacacactactccaacgcagcgggagtcatg
cactatatgatccggagtgagcccttcaccaccctgcacatccagctgcagagcggcagg
tttgactgtgcagacaggcagttccactcagtgcacgcagcctggcaggcacgcatggag
aaccccgtggatgtgaaggagttaatcccagagttcttctacttcccagagttcctggag
aacatgaacgggttcgaccttggctccctgcaggtgtctttggataaagtgcatgacgtt
gttctaccaaagtgggctgaatccagggaggacttcatccggaagcacaggaaagcactg
gagtgtgagcatgtgtctgcccacctgcatgaatggattgatctgatctttggctacaag
caaaggggacctgctgcagtggaagcactcaacgtcttctactactgcacctacgagggt
gctgtggacctggatgccattgcagatgaaacggagaggaaggctctggaggggatcatc
agcaactttggacagactccctgccagctgctgagggagccccatcctccccggctgtct
gcggagaacgctatgcggcgactggctcgctttgagaacaaccccctcaacctcctggac
cacttgtctcagctcaaggccttcgtagagagtatcagtgataacgtttccctggtgcaa
gctgtagttcccaaaaaccaggcccgctctttcatcacccagggctatccggacctgctg
gttacagtcagtgccaatggattgctgggaactcacagctggctgccatacgataaaaac
attgcaaactacttcagcttcagcaaggaccctactgtctccaacccgaagacccagcgt
ttcctgtcgggacccctgtcccctgatgtggagctcacctcaaagatcctggtggtgtct
cacgatgggaagctgctattcagtggggggcactgggacaacagcttgcgggtaactgca
ctggccaaggggaaggtggtcgggcagctctgcaggcacattgacatcgtgacgtgcctg
gcgctggacctgtgtggaatctacctcatctctggctcacgggacaccacctgcatggtg
tggcaggtccaacagcagggtgggttttcctgtggtctggctccaaagccagttcaggtc
ctctatggacacaacgatgaggtcacctgtgtggccatcagcaccgagctggacatggcg
gtctcggggtcaaaggacggctcattgatcgtgcacagtgtgcggagggggcagttcatg
cggaccttgcagccagcctgtgagcgctctctcccggtcactatctccgacctggtcgtg
gggttggagggccatatcgtcacacagaccatcctgcaggggaggagcacggtcaaggat
aagttctccctgcacttgtactctattaacgggaagctgcttgcgtcggtggttctggag
cagcaggtgtcggcgatgtgcctgtctcaggagcacgtcatcctgggtacggtgcagggc
tccctgtgcatccgagacctatacagtctgaagttggtgatgagccctttggcgctgaag
gtctcggtccacagtgtatccataaccaaagagaacagccacatcctggtgggactggga
gacggcaagcttattgtggtgggagccgggcaaccctctgaggtgaagacgggccagttc
actcggaagctgtggggctcgaagcggcgcatcactcggatctcctcgggggagacggag
tacaaccccacagagtctgctgagaaatag
DBGET
integrated database retrieval system
