Polyodon spathula (Mississippi paddlefish): 121312982
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Entry
121312982 CDS
T07273
Name
(RefSeq) SWI/SNF complex subunit SMARCC1-like isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121312982
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121312982
03036 Chromosome and associated proteins [BR:
pspa03036
]
121312982
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
121312982
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
121312982
PBAF complex
121312982
GBAF(ncBAF) complex
121312982
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
HEAT_GCN1
BRCT_2
DUF919
SpeFL
Motif
Other DBs
NCBI-GeneID:
121312982
NCBI-ProteinID:
XP_041100974
LinkDB
All DBs
Position
3:complement(31414044..31466338)
Genome browser
AA seq
1094 aa
AA seq
DB search
MAMVATAAGGTGSGGPVVTGQGASGASALGVGRKKDGGPPVKYWESAETISQLESVRVWT
GKHYKKYVQADSPTNKTLAGLVVQLLQFQEDAFGKRVNNPALTKLPAKAFLDFKAGGALC
HILGSVYKFKSEQGWRRFDLQNPSRMDRNVEMFMTVEKTLVQNNCLTRPAVYLVPEIEQK
LAAKLKDIIKRHQGTVTDDKSKASHHIYPVPSSLEDEEWLRPVMRKDKQVLVHWGMYPDS
YDTWVPASDVDGDVEENLNPDKPWKVHAKWVLDTDEFNEWMNEEDYEVDENKKSVSYPKR
ISTHIEESSRTPDRKERKAAASGKKRRRSPSPPPTPAESRKKGGKKGQPTPNWKKRNQRE
EEEEEEEQEDLTKDMEDPIPVPNMEEVILPKNLNPKKDSENTPVKGGTVADLDEQDEESM
VTSGKQQEEEEEQGKAEVNRLIDSSEDNVTEQTHHIIIPSYASWFDYNCIHEIERRALPE
FFNGKNKSKTPEIFLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAVMRVHAFLEQWG
LINYQVDADSRPLPMGPPPTPHFNVLADTPSGLVPLQHRPPQVPASQQMLNFPEKGKDKS
SDMQNFGLRTDIYSKKTLNKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRT
QDECILHFLRLPIEDPYLENSEASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVAAA
AAKAALEEFSRVREEVPAELVEAHVKKVQEAAKTTGKVDPAFGLESSGIAGTTPEEPEKL
EAPEPEKMETETEGQQPEKVENKEDAAVDKLSEPAEKPQERVKSEATESEKEEEALAGEE
SRTDKDQEEEKENMDTSRDSDWESGKKKVEPEVGEGNIATAAAAALASAATKAKHLAAVE
ERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQAFHMEQLK
YAEMKARQQMEQQQAAAAAQNPAGQHPALSGMMGHQQPPAFPVMHHQIGPHHPGQPGPIG
GPICPGQPMAGRISTSAPGGPSHPAQPNIPPMMGPRHPGAQNGMYPTPPVQPDGIAPTSA
GHLATPAPTRVAEN
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
atggcaatggtggctacagcagcgggaggaactggctcaggaggccccgtggttacaggg
caaggggctagcggcgcctcagcactcggggtgggcaggaaaaaagatgggggcccgccg
gtgaagtactgggaaagcgcggagacgatttcccaacttgagtcggtgcgggtttggact
gggaagcattacaaaaagtatgtccaggctgactcccccaccaataaaacacttgcaggt
ctggtggtgcagctgctgcagttccaagaagatgcctttgggaaacgtgtcaacaaccca
gcgctcaccaaactgccggcaaaagccttcctggacttcaaggcaggaggagccctgtgt
cacatcctggggtcagtgtacaagttcaagagtgagcagggctggcgaaggtttgatttg
cagaacccgtcccggatggacagaaatgttgagatgttcatgactgtcgaaaaaacactg
gtgcagaataactgcctgaccaggcctgctgtctaccttgtccctgaaattgaacagaag
ctggcggctaaactaaaggacatcatcaagcggcaccagggtactgttacagatgacaag
tccaaggcttctcaccacatctatcctgtcccttcctcactggaggatgaggagtggctg
cgtccggtgatgcggaaggacaaacaggtgctggtgcactgggggatgtatccagacagc
tatgatacctgggttcctgccagtgatgttgatggtgatgttgaagaaaacctgaaccct
gataagccctggaaggttcatgcaaagtgggtcctggacacagatgaatttaatgagtgg
atgaatgaagaagactatgaagtagatgagaacaagaagtctgtgagttatccaaaacgc
atctccacccacattgaggagtcctcccgcacccccgatcgaaaggaacggaaagcagct
gcttccggaaagaagaggaggcgctctccctctccccctccaacccctgcagagtcccga
aagaagggcggtaagaagggtcagcccaccccaaactggaagaagcgcaatcagcgtgag
gaggaggaggaggaagaggagcaggaggacctaaccaaggacatggaggaccccatccct
gtccccaacatggaggaggtcatcctgcccaagaacctgaatcccaaaaaggacagtgag
aataccccagtgaaggggggcaccgtggctgatctggatgagcaagatgaggagtctatg
gttaccagtgggaagcagcaggaggaggaggaggagcagggaaaggcagaggtgaaccgc
ttgatcgactccagtgaagacaatgtgacagagcagacccaccacatcatcatccccagc
tatgcatcctggttcgattacaactgtatccatgagatcgagaggcgtgccctgccagag
tttttcaatgggaagaacaaatccaaaaccccagagatattcctggcatatcgtaacttc
atgatcgacacttaccggctgaacccacaggagtacctcaccagcacctcctgcaggagg
aacctcactggggacgtgtgtgctgtcatgagagtgcatgccttcctggagcagtggggt
ctgatcaattaccaagtggacgctgacagtcgtcctctgccgatgggccccccgcccaca
ccccacttcaatgtgctggcagacaccccttccggactagtacccctgcagcaccgcccc
ccgcaggtcccggcctcccagcagatgctgaacttcccagaaaaggggaaggacaagtcc
tcagacatgcagaactttgggctccgcactgacatctactccaagaaaacactcaacaag
agtaaaggagccagtgcagggagggagtggaccgaacaggagaccttgctcttactggag
gccctggagatgtacaaggacgactggaacaaggtgtctgagcatgtggggagccgcacc
caggatgagtgtatcctgcacttcctgcgactacccattgaggatccctacctggagaac
tcggaagcttccctagggccactggcctatcagcctgtccccttcagccagtccgggaac
cccgtcatgagcacagtggctttcctggcctctgtggtggacccccgcgtggcagctgct
gctgcaaaggcagctctggaggagttctcacgggtgcgagaggaggtcccagcagagctg
gtggaggctcacgtcaagaaggtccaggaagcagccaagaccactggcaaagtagaccca
gcatttgggctggagagcagcggcatcgccggcaccacccctgaggagccagagaagcta
gaggctccagagcctgagaagatggagacagagactgaaggacagcagccagagaaggtg
gagaacaaggaggatgctgcagtggataagctcagtgagcctgcagagaagccacaggag
cgtgtgaagagcgaggccacagagtcagagaaggaggaggaagcattagctggggaggag
agcaggacagataaagaccaggaggaggaaaaggagaacatggacaccagtagggacagt
gactgggagtctgggaagaagaaagtggagcccgaggtgggggaggggaacattgccacg
gccgcagcagcagctctggcctccgcagccactaaagccaagcacctggctgccgtggag
gagaggaagatcaagtccctggtggccctgttggttgagacccagatgaagaagctggag
atcaagctgagacactttgaggagctagagaccatcatggaccgtgagaaggaagcgctg
gagcagcagcggcagcagttgctaacagagagacaggccttccacatggagcagctgaag
tatgcagagatgaaggctcgccagcagatggagcagcagcaagcagcagcagctgcccag
aacccggccgggcagcaccctgctctatctggcatgatggggcaccagcaaccccccgcc
ttccccgtgatgcatcaccagataggacctcaccatcccggacagccagggccaattgga
gggcctatatgtcctggacagcccatggcggggagaatatcgaccagtgctccaggtgga
ccatcccaccctgcccagcccaacattcccccgatgatgggaccccggcacccaggagca
cagaacggcatgtaccccaccccaccagtgcagcctgatgggatagccccaacctctgca
ggacatctagccacacccgccccaacacgagtggctgagaactag
DBGET
integrated database retrieval system
