Polyodon spathula (Mississippi paddlefish): 121313075
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Entry
121313075 CDS
T07273
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121313075 (topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pspa03032
]
121313075 (topbp1)
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121313075 (topbp1)
DNA replication proteins [BR:
pspa03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
121313075 (topbp1)
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
121313075 (topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
121313075
NCBI-ProteinID:
XP_041101152
LinkDB
All DBs
Position
3:complement(38876381..38906608)
Genome browser
AA seq
1517 aa
AA seq
DB search
MSKVDRDPFFVKFVQNLKQRSDLATKAYDAIKELQSEEFLQTVDEEAALLLQQKDKSLYI
FDSFSGPAFIHLKKLGCRIVSPLVVLFCLQHQRPVPKAEHPVYNMSMADVTVSCTSLEKE
TREEVSKLVQLMGGRVFRDLNVSVTHLIAGEVGSKKYVVAANLGKPILLPSWVKACWEKS
QDSLFRYTDLNSDEYLCPIFRGCTICVTGLTNLSRKEVQRLAVEHGGQYTGQLKMNECTH
LIVQEPKGQKYECARKWNVYCVSIHWLFSSIEKRFCQDESKYMVEPTMGREQAPNTSTPT
GCEKKQDVSSASLLLGVSQISNISMSCINESAFNTITASRLEPAGDNLEMLDISVFNAQD
DLLDGCKIYLCGFGGKKLDKLRKLINSGGGLRFSHLSEDVTHIIMGEKDEEVKQFLSKAS
HRPHIVTVKWLLESFSKGCLLPEEKYFHSDYLPPAPSAVVHRPAPQRLNTSVEIKAAVAI
SPGREQRKDDELLSQYMEEDKTVVEAGDRSCDDATRVTMLETDPSSNTMLGEAATLLEEG
GLFSGKRFLIAGFSGEDEACLAELIEEHAGKVLGACSRAIADYAVVPLLGCEVESTVGDV
VTNTWLAMCIEQQSLLDLQMNPMFTPVAVVEGSTPLKDCVLSVSQFTGVERDSLVYLAEL
LGARVQEFFVRKANQRKGMVASTHLVLKEPEGSKYEAAKKWNLPAVTMRWVLDSAHTGRR
AEEDHFLVENAGSPENEESCYIGGTQKQEKLRMSMRSPEIPMAQLNALKNTVVTPLDMNR
FQSKAFQSVISRPDGGKVTPGIECRALQREPSLQLDTPSRFLCRDQLFKPSFDVKDALAA
LETPGGPQQQRRKMSTPLSEVIGRNMKVALANSTRNNMAAVTASPQLAAPEPQQVEEKPK
PLAGVTICVSKKLIKKQSELNATAASLGADYRWSYDETVTHFIYQGRQNDTSREYKAVKE
RDVHIVSEHWLQACAEEQRLVPESLYPYTYNPKMSLNLSQVQDRRFSTLRSQPSIPYCKD
LEQDCEQDKSHVPLDRDEALTEETRNHREERNPEETNLENLEKGDLTEALEMRENLQRQL
QEIMSATKLPKGRRVSLAVLQNSPQTPDSVGRSGRNGRSRALEALRHSRQAIMDINTEPS
QNEQITWDDPTAREERARLANNLQWPGSPSQHSETLQINAEEEIPQHKVSLTDSELAEFA
IGELDETNKSKTAKSPGPKKIETPPKDDIILTPQAPSIAFPLANPPVAPQPKGQEEKKGG
KIQPVFQLSSLNPQERIDYCHLIEELGGVVLEKQCFDPSCTHIIVGQPMRNEKYLASMAA
GKWILHRSYLEACRAVGHFIEEEDYEWGSSSILDVLPGINAQQRKLAVSALRWRKFMQRQ
RENNNSSEGAFSGWKVILNVDQAKEAGFRRLLQSGGAKVFSSHSPSMYKESSHLFVDFSK
LKAEDPRVNVAEAAAHKVNCLKPEYIADYLMQDPPPAIENYCLPEAAQYLQNKLESSKSH
KRKASGDTSAVKKSRIN
NT seq
4554 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagtggatagagatccgttcttcgtgaaatttgtgcaaaatttaaaacagagg
tcagatcttgcaacaaaggcctatgatgctattaaagagttacagtcagaggagttcctg
cagactgttgatgaagaagcagcacttttgttacagcaaaaagataaatctctctacatt
ttcgattcttttagtggaccagcatttatccaccttaaaaagctgggctgcaggattgtc
agcccactggtggttcttttctgcctccagcatcagcggcctgtgccaaaagccgaacac
cctgtgtacaacatgtcaatggcagacgtgacagtttcctgtaccagtttggagaaggaa
acaagggaagaagtgagtaagttggtgcagttaatgggaggtcgtgtgttccgggatctt
aatgtttcagttactcatttgattgctggagaggttggcagcaaaaagtatgtggtggcc
gccaatctggggaagcccatcctactgccctcctgggtgaaagcatgctgggagaaatcc
caggacagtttgtttaggtacacagacctgaacagtgatgagtacttgtgccctatattt
cgtggctgcacaatctgtgtaacaggattgaccaacttgagtagaaaggaggttcaaagg
cttgcggtggaacatggcggccagtatacagggcaactgaagatgaacgaatgcacacac
ctcattgtgcaggagcccaaaggtcagaaatatgaatgtgcaagaaaatggaatgtatat
tgcgtgtccatacactggctcttcagcagcattgagaagagattctgccaggacgagtcc
aagtacatggtggagcccaccatgggcagagagcaagcccctaatacatccacacctaca
ggttgtgagaagaagcaagatgtttcttcagcttcattacttttaggcgtgagccaaatt
tccaacattagtatgagctgcatcaatgaatctgcctttaacactattactgccagtcgg
ctggaaccagctggagataacttggaaatgcttgatataagtgttttcaatgcacaagat
gacctgcttgatggctgcaaaatctacctgtgtgggtttggtggtaagaagctagataag
ttaagaaagcttatcaacagcggtgggggtctacgcttcagccacctcagtgaggatgtc
acccacataatcatgggagagaaggatgaagaagtaaaacagttcttaagcaaggcatcc
cacagaccccacatagtaacagtaaagtggttgctggagagcttctccaaaggctgcctc
cttccagaggaaaaatacttccactcagactacctgcccccagcaccctctgctgtggtc
caccggcctgccccacagaggctaaacaccagtgttgagataaaagcagctgtagcaatc
agccctggcagggaacagagaaaagatgacgaattgctgtctcagtacatggaagaggac
aaaacagttgttgaagctggggacagaagctgtgatgatgccactcgtgttaccatgttg
gagacagacccttcaagcaacaccatgctgggggaggctgccacgttgctggaggagggg
ggtctgttcagcgggaagcggttcctgatagctggcttcagcggagaggacgaggcctgc
ctggcagagttgatcgaggagcatgctgggaaagtgcttggggcctgcagccgagccatt
gctgactacgcagtggtgccactgctgggctgtgaggtggagtccacagtgggagatgtg
gtgaccaacacctggttggcaatgtgtattgaacagcagagtctcttagacctgcagatg
aatcccatgttcactccagttgctgtggtggaaggaagcactccgctgaaggactgtgtt
ctttctgttagccagtttactggtgtggagagggactcactagtctacctagctgagctt
cttggagccagagtacaggaattctttgttcggaaagccaaccagcggaaaggcatggtg
gctagcacccatctggtgctgaaggagccagaggggtccaagtatgaagcagccaagaag
tggaacttgcctgcggtcaccatgcgatgggtcctggattctgcacacaccggcaggaga
gctgaggaagaccacttcctagtggaaaatgctggctcaccagaaaatgaagagagttgt
tacataggtgggactcaaaaacaagaaaaactcagaatgtccatgcgctcccctgagatt
cccatggctcagctgaatgcattgaagaacactgtggtgaccccgctggatatgaaccga
tttcaaagcaaagccttccagtcagtgatctcccggcctgatggaggaaaggtgacacca
ggtattgagtgcagagcgctgcagagagaaccatccctacagcttgacacaccgtccagg
tttctatgcagagaccagctcttcaaaccatcctttgatgtcaaggatgccctggcagct
ctggagacaccaggaggcccacagcagcagagaaggaaaatgagcaccccactgtctgag
gtgattggaaggaacatgaaggttgccctggcaaacagcactcgaaacaacatggctgct
gttactgccagcccacagctagctgcacctgaaccacaacaggtggaagagaagccaaag
ccccttgcaggtgtcactatctgtgtgagtaagaaactcattaagaagcagagtgagctg
aacgccactgcagcctctcttggggcggactacaggtggtcttacgatgaaacagtaaca
cacttcatctatcaaggccgacagaatgacactagtcgggagtacaaggccgtcaaagaa
agagacgttcacattgtctctgagcactggcttcaagcatgtgcagaggagcagaggctt
gtgcctgaatccctgtatccctatacatacaatcctaaaatgagtctgaacctcagccaa
gtgcaggacagaagattttctacacttagatcacaacccagcattccctactgtaaagat
ctggaacaagattgcgagcaggacaagtcacatgttccattggatagagatgaagcgttg
acagaggaaaccaggaaccaccgtgaagaaagaaaccctgaagaaacaaacctagaaaat
ctggagaaaggggatctgacagaagcattagaaatgcgagagaatctgcagcggcagctg
caggagatcatgtctgccaccaagctgccaaaaggccgacgagtttcactggctgttttg
cagaattctccccagacccctgacagtgtgggccgctcagggaggaatgggcgtagccgg
gctctggaggcactcaggcattcccgtcaggccataatggacattaatacagagccctct
cagaatgagcagattacctgggacgaccccactgccagagaagagagagctaggctggcc
aataacctgcagtggcccggcagtccatcccagcactccgagactctccagatcaatgca
gaggaagaaatcccccaacataaagtctcgttgactgattcagaactggctgaatttgct
ataggtgaacttgatgaaacaaacaagagcaagactgcaaaatctccaggcccaaaaaag
attgaaaccccaccaaaagatgacattatcctcacgccacaagctcccagcatcgctttt
cctctggcaaacccaccagttgcaccacagcccaagggacaggaggagaaaaaaggagga
aagatccagcctgtatttcaactgtcttcgcttaaccctcaagaaagaatcgactattgc
cacctcattgaagaacttggtggggtggttcttgagaaacagtgcttcgatcctagctgc
acacatatcattgtgggacaacccatgaggaacgagaagtacctggcctcaatggctgct
ggaaagtggatactccaccggtcctatctggaggcatgcagagctgttgggcacttcatt
gaggaggaggattatgagtggggcagcagctccatccttgacgttcttcctggaataaat
gcccagcagaggaaacttgcggtttctgctttgagatggagaaagttcatgcagaggcaa
agggagaacaacaatagctcagagggagcttttagtggctggaaagtaatattaaatgtc
gatcaagcgaaagaggcaggatttagacgactgcttcaatctggtggagctaaggttttt
tcaagtcattctccatctatgtacaaggagtccagtcatctgtttgtggatttcagcaag
ctaaaagctgaggatcccagagtgaatgtggcagaggctgctgctcacaaagtgaattgc
cttaaaccagaatatattgcagattatcttatgcaggacccacctcctgcaattgaaaat
tactgtctaccagaagctgcacagtatctgcagaataagttggagtcaagtaaatctcac
aaacggaaagcttctggagatacatcagcagtgaagaagtccaggataaactaa
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integrated database retrieval system
