Polyodon spathula (Mississippi paddlefish): 121313090
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Entry
121313090 CDS
T07273
Name
(RefSeq) collagen alpha-1(XV) chain-like isoform X1
KO
K08135
collagen type XV alpha
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pspa00535
]
121313090
Proteoglycans [BR:
pspa00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
121313090
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Laminin_G_3
3keto-disac_hyd
Motif
Other DBs
NCBI-GeneID:
121313090
NCBI-ProteinID:
XP_041101178
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Position
3:complement(40633658..40727625)
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AA seq
1351 aa
AA seq
DB search
MEQRIFCLYTLLIVVSPVCGQWWWSRYWGTPETTSAPPGITDTVTTRTEEDVSYGMTETR
RLASQLMIQKEVSPVSVETKFSANKSKNVKRLLKRIKFERGSKGLLDLTELIGVPLPPSV
SFITGFEGFPAYSFGPDANIGRLTKTLITEPFYRDFAVIITIKPTTNRGGVLFAITDAFQ
KVIYLGLALTPVEDDTQRIIMYYTEPGSSRSQQVASFKVAGMTNKWNRFTLGVQDNEITL
YMDCEEYHRTTFQRASRPLKFESSSGIFVGNAGGTGLEKFVGSIQQLLIKPDPRAAEEQC
EDDDPYASGAGSGDNTHEEQDTVDEAKKRVEQVEYDPSLPGESFSRPVQAPPTEAAYTEE
TEDFSGHRPSTPPLEQHSEDITFIEERVSLRNEQVQRGDRGYGSEAVQNERVGSGSSGFG
PKGEKGEQGPPGPPGPPGPLKVSTALPGAAGPEGPPGQPGPPGKDGKTGATGKDGLPGEM
GPQGFPGLPGDNGVKGEKGDPGVGLPGPPGPPGPPAPSRYPNLLDAYGSGFGDFDSDAEL
IRGPPGPPGPAGQPGPPGPSGPLTASERLIPGPPGPTGLPGKDGKDGGSGDPGLPGPQGP
PGIGGAAGPQGQKGEKGDQGSPGLKGDAGDPGPVGPSGTVGSDGQPGIPGSPGPPGPPGP
PGKGFSSGLVDMEGSGGIGAFGKPGPRGPPGAVGKPGPMGPKGDNGTIGLPGIVGEKGDA
GLPGNPGQPGVAGLPGQRGDKGERGDTGPKGEPGQDGKSIIGPPGLPGPPGQIISLQDLM
LNDTEGIFNFTDIRGPPGPEGMPGHAGFPGPRGPKGATGFPGVQGQKGEKGEAGSIIAAD
GSLMAGLTGPKGPKGIQGEPGLTGPRGPMGPKGPLGPKGEFGFPGRPGRPGMTGKKGEKG
EVVMLPGPPGLPGPPGPPGPSITIKGTVFPVPPRPHCKTPVNGNKETEHESTFTHGPKGQ
KGLFGSKGEKGDNGLSGIPGPKGWWNPDEFKGEKGDSGYKGDKGEKGEAGVSGPPGLPGR
SGLVGPKGESIIGPRGPPGMPGVPGQPGFGRPGPAGPPGPPGPPPIFGSAVAIPGPPGPP
GQPGPTGVGNPTSTYRNIEALQKETYRTAEGTMVYVTDKSEVYIRVRQGWRKVLLGELIP
FPSEIPPPPAASGFEMQSFLPGYNLLPHTVHTQPGLHLVALNAPFSGDMRGIRGADFQCF
QQARAMGLTATYRAFLSSHLQDLATVVKKGDRFNMPIVNLKREVLFNNWMAIFSGNGGQF
DPQIPIYSFDGRNVMTDPSWPQKMIWHGSNRNGIRQTSNYCEAWRAGDMAVTGQASLLQS
GRLLDQHTRSCSNNFIVLCIENSYMHDHRRK
NT seq
4056 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaggattttttgcttgtataccttgctgatagtggttagtccagtgtgtgga
cagtggtggtggtctcgatattggggcacacctgaaacaacatcggcccctccaggcatt
actgacacggtaaccaccagaacggaagaagacgtatcttatggcatgactgaaacaagg
agacttgcgtctcagttaatgatccaaaaggaagtgtctcctgtttctgtggaaacaaaa
ttttcagctaataaatcaaagaatgttaaacgtcttctaaaaaggataaagtttgagcga
ggctccaaggggcttcttgatctcacggagctaataggagtcccacttcctccatcggtt
tcctttatcactggatttgaagggtttccagcctacagttttggaccagatgctaacata
ggccggctgactaaaacactgataacggagcctttctacagggattttgctgtcataata
accataaaaccaaccactaaccgaggtggcgtgctcttcgccattacggatgccttccag
aaagttatttatctgggacttgcattgactccagttgaggatgacacccagaggattata
atgtattacacagaaccgggttcttcaagatctcagcaggtggcttctttcaaggtggct
gggatgacaaataaatggaatcgttttacactaggcgtgcaagacaatgagatcactttg
tatatggactgtgaggaataccaccggacaactttccagcgtgcgtctcgccccctgaag
ttcgaatcaagttcaggaatctttgtcggaaatgcaggaggaactggattagaaaaattt
gttgggtcaatacaacagttgttaataaaacctgatccaagggctgcagaagagcaatgt
gaagatgatgacccttatgcatctggagctggaagtggggacaatacccacgaagaacag
gacactgtggatgaagccaaaaagcgtgttgaacaagttgaatatgatccatccctacct
ggtgaaagcttcagcaggccagtccaagctcctccaacagaagcagcatacactgaagaa
acagaagacttctcagggcaccgaccttcaaccccccctctagagcaacacagcgaggac
attacatttattgaagaaagggttagtctaagaaatgaacaagtccaaagaggggacaga
ggatatggttcagaagctgttcaaaatgaaagagtgggaagtggttcttctgggtttggt
ccaaaaggtgaaaagggggaacaaggtcccccagggccaccaggtccccctggcccactt
aaagtgtcgaccgctctgccaggagctgctggacccgaggggcctccaggacaaccagga
ccacctgggaaagatggcaaaactggtgctactggtaaagatggattgccgggtgaaatg
ggaccccagggctttccaggattgccgggagataatggtgttaagggagaaaagggtgat
cctggagtcgggctccctggacctcctgggccccccggcccgcctgcgccctcacgatac
ccgaatttgcttgatgcttatgggtcaggctttggggactttgacagtgacgcagaacta
attaggggtccccctgggcccccaggtcctgcaggacagccagggcctcctggaccgagt
ggccccctcactgcatcagagcgacttatcccaggaccacctggccctactggcctgcct
ggaaaggatggcaaggacggaggatctggagatccaggattgcctggtcctcaaggtcca
ccagggattggcggggctgctgggccacagggacagaaaggcgagaagggtgaccaagga
tctcctgggctgaagggtgatgccggagaccctgggccagttggaccctctggtactgta
ggttctgatggccagcctggaatacccggatcaccagggcctccaggccccccagggcct
ccagggaaaggcttcagctctggacttgtggatatggaaggatctggaggaattggggca
tttggtaaacctgggcctagaggacctccaggagctgtgggaaaacctggaccaatggga
cccaagggtgataatggtactattggccttccaggtatagtgggcgaaaagggtgatgca
ggattgcctggaaatccagggcaaccgggagtggctggacttccagggcaaaggggagat
aaaggagaaagaggagatacagggccaaagggtgaacctgggcaggatggaaagagtata
ataggcccacccggcctacctggacctccaggacaaataatatccctgcaagatcttatg
ctcaatgatactgaaggaatatttaactttactgacatccgaggaccacctggtcctgaa
ggcatgcctggtcacgcaggatttcctggaccaaggggaccaaaaggtgctacaggtttt
ccaggcgtacaaggacagaagggtgaaaagggtgaagcagggtctatcattgcagccgat
ggatctctgatggcaggattaaccggaccaaagggaccaaaaggaattcagggcgagcca
ggcctaaccggacctcgaggaccaatggggccaaaaggaccacttggaccaaaaggagaa
tttggttttcctggacgccctggtcgtccaggaatgactggaaagaagggtgagaaagga
gaagttgtgatgctaccaggacctccaggtctgcctggcccacctggacctccaggtcca
tccatcaccattaaaggaacagtttttccagtccctcccagacctcactgcaaaactcca
gtaaatggaaataaagaaacggaacatgaatccacatttacccatggaccgaagggacaa
aaaggattgtttggctccaaaggtgaaaagggggacaatggcttgtctggaatacctgga
ccaaaaggctggtggaatcctgacgagtttaagggagagaagggagattctggatataag
ggtgataaaggggagaaaggtgaagcaggtgtttctggacctcctggccttcctggaaga
tctggactggttgggcccaaaggtgaatctattattggccccagagggcctccaggaatg
ccaggtgtgccggggcaaccagggtttggaagaccaggaccagcgggccccccaggacca
ccaggaccaccccccatatttggttcagctgttgcaatcccaggacctccgggacctcct
ggacagccaggacctactggagttggtaatcctacatccacttacagaaacattgaagct
ctgcagaaggaaacctatcgcacagcagagggcaccatggtgtatgtcacagacaagagt
gaagtctacatccgagtgcgacaaggctggagaaaagtcctgctaggtgaactaattcct
ttcccaagtgaaatcccaccaccgccagctgcttcaggctttgagatgcagagtttcctt
cctggatacaatcttcttccacacacagttcatacacaacctggactccatctagttgcg
ctgaatgcacccttttccggggacatgcgaggaatacgtggagctgatttccagtgcttc
cagcaagcacgggccatggggctaacggcaacatacagggccttcctttcttctcacctt
caggatttagccacagtcgtgaagaaaggcgatagattcaacatgcctattgtcaatctt
aagagagaagtgctcttcaacaactggatggcaatattttctggcaatggaggccagttt
gacccccagatacccatctactcatttgatggtagaaatgtcatgacagatccttcatgg
cctcaaaaaatgatctggcatggttcgaataggaatggaattcgacagacctccaattac
tgtgaagcgtggcgagcaggagacatggcagtgacagggcaggcctccctgctgcagagc
gggagacttttagatcaacacacacgcagctgctccaacaacttcattgttttatgtatt
gagaacagttacatgcatgaccataggagaaaataa
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