Polyodon spathula (Mississippi paddlefish): 121313160
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Entry
121313160 CDS
T07273
Name
(RefSeq) M-protein, striated muscle-like isoform X1
KO
K24495
myomesin
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121313160
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
pspa04990
]
121313160
Domain-containing proteins not elsewhere classified [BR:
pspa04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
121313160
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
fn3
Ig_3
Ig_2
Ig_DSCAM-DSCAML_C
ig
V-set
Pur_ac_phosph_N
C2-set_2
Ig_CD22
C2-set_3
Motif
Other DBs
NCBI-GeneID:
121313160
NCBI-ProteinID:
XP_041101327
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All DBs
Position
3:complement(51879203..51932521)
Genome browser
AA seq
1592 aa
AA seq
DB search
MSLPFYQKHHKHYDSGYHSTEVQSALSQYQLEEKSSAASHSKGSRAALYSDEMLVESSSN
LSPRPKRPKQTYAALDHEIIGYVVPVFRGRREYVSGITDTEEERFKETAGYLARRNLFAS
SEGVMAISRSTEDTVREEMFEKKSRTTAMRESAERINLNKKIHETVEFHTKLNEDSLLHA
PEFVIKPRSHTVWEKQNVKLHCTVSGWPEPRVTWYKNNVPIDIHAYPGKYKIESRYGVHS
LEINRCNFEDTAQYRASAMNVKGELSALSSVVVKRYKGEIDSSSVSTVSVPLSYGLSATD
YGTKFDIHIVEKFAVSFGREGETMSLGCTVIVYPNMKRIQPEIQWYRDGVLLQPSKWMQM
HWSGERATLTLTHLNKEDEGLYTMRVVTKSGYEAYSAYVFVRDAEAEVAGAPAAPLDVDC
LDANKDYVIVTWKQPAVNGGSPILGYFVDRCEVGTTHWSQCNDTPVKFARFPVTGLVEGR
SYIFRVRAVNKNGISRPSRVSNPIAAMDPADKERMKGHPSAPWTGQIIVTEEEPAEGVVP
GKPCQLAVTEATKSYVVLSWKPPGQRGHEGIMYYVEKCVAGTDSWQRVNTEIPVKSPRFA
LFDLAEGKSYCFRVRCCNSAGVGEPSEPTEATVVGDKLDIPKPPGHVLPTRNTDTCVVLT
WGESKDAKELVGYYIEATIVGSGVWEPCNNKPVKGTRFFCHGLSTGQTYVFRVSAVNAAG
LSEFSQESEAIEVKAAIGRGVPQASPAPPYGISVLETVRNSMVLGWKQPKFIGGAEITGY
FVDYREVIDGVVGKWHEAHIKPISERAYRVNDLKENMTYQFQVRAANIAGVGIPSLPSPS
FKCEEWTIAVPGPPYDLRCTEVRKNSLVLLWNPPVYIGRSEVNGFYLDIKEAEADEGQWR
SVNEKATEKKYMKIKHLKEGTAYVFRVRAQNKAGVGKPSDETEPVLAETRPGTKEVVVDV
DDDGVISLIYECSEMTTDSKFVWSKNYEEVSDSSRLAMETKGGRSRAVFKDPAIEDLGIY
SCVVTETDGVSASYTLDEDELKRLLEMSHDHKFPTVPLKSDLAVELLEKGRVRFWLQAEK
LSANAKNNFVFNDTELIHGEKYKMSVDKNTGIIEMIMEKLADEDEGTFTFQLKDGKATNQ
SSLVLIGDVFKKLQKESEFQRQEWLRKQGPHFVEYLGWEVTPKCDVLLKCKVANILKETT
IIWYKDEREIMFDDKHDFKEGVCTLLISQISKKDAGIYEVILKDDRGKDKSLLKLVDQGF
TDVMNSVFKAIAESATELKIQSTEDGIRLYSFVTYYTEDLRVSWHHKESKMSYTDRVKCG
VTGEQLWLQINEPTDKDKGKYALEIFDGKGGLQKTVDVSGQAFDDAYAEFQRLKQAAIAE
RNRARVIGGLPDVVTIQEGKSLNLTCNVWGDPVPEVTWLKNEREMVGDDHCILKFPSEKF
ASFTITSVSSADSGKYSILVKNKYGTETGDFTLIVTQAIGEMCMAMYVADDAGNVLETIT
ADGNSKPATPPSCKKGSKYKATEHIRPCVEEIVVTEETPNEESSVTEEKGDMPLQITAQK
RVSVPDVSHINHTSAAGVEESQNKLKADTTTK
NT seq
4779 nt
NT seq
+upstream
nt +downstream
nt
atgtccttacctttctaccagaaacaccacaagcactatgacagcgggtaccacagcacg
gaggtgcagtctgcgctcagtcaataccagctggaggaaaaaagcagtgctgcatcccac
agcaaaggatcaagagctgccctctattcagatgagatgctggtggagagctcctccaac
ctgagcccacgacccaagagaccaaaacagacctacgctgctctggatcatgagatcatc
ggctatgtggtgccagtgttcagaggccgtcgagaatatgttagtggaataacagataca
gaagaggagaggttcaaggagacggcaggatacctggctagaaggaaccttttcgcttcc
agtgaaggtgtcatggctatcagcagatccacggaggacactgtacgggaagagatgttt
gagaagaagtctagaacgactgctatgcgagagtcagccgagcgcattaacttaaacaag
aagatccacgagactgtggaatttcatacaaagctgaatgaggacagtctattgcatgct
cctgagtttgtcattaagccccggtcccacactgtctgggagaaacagaacgtcaaactg
cactgcaccgtctctggctggcctgagccccgcgtaacctggtacaaaaacaatgtccct
attgatatccatgcttaccctggcaagtataaaatagagagccggtacggcgtgcattca
ctggagatcaacagatgtaactttgaagacacagcgcagtatcgtgcttctgccatgaac
gtcaaaggggaactctctgccctttcctcagttgtggtgaaaaggtacaaaggggagatt
gattcttcttctgttagcactgtttcagtgcctttatcatatggcctttcagccactgat
tatggcacaaagtttgatatccacattgttgagaaatttgctgtgtcatttggtagagag
ggggagactatgagcttgggctgcacagtgattgtctaccccaatatgaaacgcatacag
ccggagatccagtggtacagagatggtgttcttcttcagccttccaaatggatgcagatg
cactggagtggggaacgcgccacactgacccttacccacctcaacaaggaggacgagggc
ctctacaccatgcgtgtggtcaccaaatcaggctatgaagcctacagcgcttatgtattt
gttagagatgctgaagccgaggttgctggggctcctgctgctcccctggatgtggattgc
ctggatgccaacaaagattatgtcattgtcacctggaagcagcctgctgtaaatggaggc
agccccatcctgggatactttgtggacaggtgtgaggtgggcaccactcactggagccag
tgcaatgacaccccagtcaagtttgctcgtttccctgtcaccggcctggtggagggccgc
tcctatatcttccgtgtccgggctgtaaataaaaacggcataagcagaccatccagagta
tccaatcccattgctgcaatggaccctgctgacaaggagagaatgaaaggtcatccgtct
gccccatggacagggcaaattattgtaaccgaggaggagcctgcagagggagtggtgcct
gggaaaccctgtcaattggcagttactgaagccaccaagagctatgttgtcctgagctgg
aaaccccctggccagagaggccatgagggcattatgtactacgtggaaaagtgtgtcgca
ggcacagatagctggcagagagtgaacacagagatcccagtgaagtctccccgctttgct
ctctttgacctggcagagggcaagtcctactgcttccgtgtgcggtgctgcaactccgcc
ggagtgggagaaccgtctgagccaaccgaggctaccgtcgtgggagacaaactagatatc
cccaagccacctggccatgttttgccaactaggaacactgatacgtgtgtggtcctgacc
tggggggaatccaaagatgcaaaggagctggttgggtactacattgaagctaccattgtg
ggctcgggagtctgggagccctgcaacaacaagccagtaaagggcaccaggtttttctgc
catggactttcaactggtcagacgtacgtcttcagagtcagtgctgtgaacgccgcgggg
cttagtgaattttcacaggaatctgaggctattgaggtcaaggcagcaattgggagaggt
gttcctcaggcttcccctgccccaccctatggaatcagtgttcttgaaaccgttcgcaac
tccatggtgcttggatggaaacagcccaaattcattggcggtgctgagattactgggtac
tttgtggactaccgtgaagtgatcgacggcgtggtggggaagtggcacgaggcccacata
aagcccatcagcgaaagggcatacagggtaaacgacctaaaggagaacatgacctaccag
ttccaggtgcgtgctgctaatatagctggggttggaataccatcccttccaagcccatcc
ttcaagtgtgaggaatggaccattgcagtgccaggacctccttatgacctcaggtgtact
gaagtgaggaaaaactccctggtgctgctctggaatccccctgtatatattggccgcagc
gaggttaatgggttctacctggatatcaaagaggcagaggcggatgaaggtcaatggcgg
tctgtcaatgagaaggcaacagaaaagaaatacatgaagattaaacacctgaaggaaggc
actgcctatgtcttccgtgtgcgagcacagaacaaagcaggtgtaggaaaaccctcagat
gagactgagcctgtccttgctgagactcgcccaggaaccaaggaggtggttgtggatgtt
gatgatgatggtgtgatttcattgatctatgagtgctctgagatgactacagattctaaa
tttgtctggtccaagaattatgaagaagtctctgattcgtcccgtcttgctatggagacc
aaaggtggcaggtcaagagctgtcttcaaagacccagcaattgaagatttgggcatttac
tcatgtgttgtcacagaaacagatggggtatctgctagctataccttagatgaagatgag
ctgaaacgtctgctagaaatgagccacgatcataaatttcccactgtccctctgaaatca
gacctggctgttgaacttctggagaagggacgtgttcgcttctggctgcaagcagaaaag
ctatctgccaatgctaaaaataactttgtcttcaatgatacagagttgatccatggagag
aagtataaaatgagtgttgacaaaaacactggtattattgaaatgataatggaaaaattg
gcagatgaagatgaaggcactttcaccttccagttaaaggatgggaaagcaaccaatcaa
tccagcttggttctgattggggatgttttcaagaagctacagaaggaatcagaattccag
aggcaagaatggctcagaaaacaaggtcctcactttgttgagtatcttgggtgggaggtt
actccaaaatgcgatgttttgctgaaatgcaaggtggctaatattctgaaggagaccaca
attatctggtacaaggatgagagagagataatgtttgatgacaagcatgacttcaaggag
ggagtgtgcacgctgctgatttcacagatttcaaagaaagatgctggtatttatgaagtt
atattgaaggatgacaggggaaaggataagagtttattgaaattggttgaccaaggtttt
actgatgtaatgaacagcgtattcaaagccattgctgagtctgccacagagctgaagatc
cagagcacagaagatggaatcagactgtattcctttgtcacttattacactgaagacctc
cgagtcagctggcatcataaagaatcaaagatgtcttacacagacagagttaagtgtggt
gtcactggtgagcagctatggttacagattaatgagcccactgacaaagataagggcaaa
tacgcactggaaatctttgacggtaaaggtggactccagaagacagtggatgtgtctgga
caagcatttgatgacgcttatgctgaattccagaggcttaagcaagctgcaattgcagaa
agaaaccgtgctcgagtgattggtggtctgcctgatgtggtcacaatccaggagggcaag
tcccttaaccttacatgcaacgtctggggtgaccctgttcctgaggtcacatggctgaag
aatgagcgtgagatggtgggagatgaccactgcatcctgaaatttccatcagaaaaattt
gccagcttcactattacctctgtcagctcagcagactccggaaaatacagcattctggtg
aaaaacaagtatggaactgagaccggtgacttcactctcatagttacccaggccattgga
gaaatgtgcatggcaatgtatgtagctgatgatgcagggaatgttctggaaactattact
gccgatggcaacagcaaacctgccactccacccagctgtaaaaaagggagcaaatataaa
gccacagagcacataaggccttgtgtggaagagattgtagtaacagaagagacaccaaat
gaggagtcgtctgtcacagaggagaaaggagacatgccactgcagattacagctcagaag
agggtttctgtgccagatgtcagccacattaatcatacatctgcagcaggagtagaagaa
tcacaaaacaagctcaaggcagatacaacaacaaaatga
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