Polyodon spathula (Mississippi paddlefish): 121313169
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Entry
121313169 CDS
T07273
Name
(RefSeq) ankyrin repeat and IBR domain-containing protein 1-like isoform X1
KO
K11967
ankyrin repeat and IBR domain-containing protein 1 [EC:
2.3.2.31
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121313169
Enzymes [BR:
pspa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
121313169
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
121313169
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IBR
Ariadne
IBR_1
Ank_2
IBR_2
Ank_5
Ank_4
Ank_3
Ank
UBA_ARI1
zf-RING_UBOX
zf-RING_2
zf-C3HC4_2
zf-C3HC4_4
UIM
Motif
Other DBs
NCBI-GeneID:
121313169
NCBI-ProteinID:
XP_041101380
LinkDB
All DBs
Position
3:complement(52630956..52709338)
Genome browser
AA seq
1126 aa
AA seq
DB search
MGNTATKFRKALINGDETLASQLYESNPQFKESLDPNTSYGEPYQHNTPMHYAARHAMSR
LLRLFLFSKDGNPNKRNVHNETAMHLLCMGPQIMLAEGALHPRLARPYEDEHKRAECLQM
ILKWTGAKLAQGEYERADVNATDNKKNTSLHYAAASGMKTCVEFLVKNDGDLFAENENKD
TPCDCAEKQHHKELALSLESQMVFSRDPEADDIEAEYAALDKREPFEGLRLQELRRLKDM
LIVETADMLQAPLFTAEALLRAHDWDREKLLEAWMSNAEDCCQRSGVQMPTPPPTGYNAW
DTLPSPRTPRTTRSSVTSPDEISLSPGDEDLPMCGICMCNITVFEDPVDMACGHEFCRAC
WEGFLNLKIQEGEAHNIFCPAYDCFQLVPVDVIESVVSREMDKRYLQFDIKAFVENNPAI
RWCPTAGCERAVRLTRPGTGIAGSDSLNFPLLRAPAVDCGKSHLFCWECLGEAHEPCDCQ
TWKMWLQKVSEMKPEELVGVNEAYEDAANCLWLLTNSKPCANCKSPIQKNEGCNHMQCAK
CKYDFCWICLEEWKKHSSSTGGYYRCTRYEVIQQVEEQSKEITVEAEKQHKTFQELDRFM
HYYTRYKNHEHSYQLEQRLLKTAKEKMEQLSRALSGAEGGPDTTFIEDAVRELLKTRRIL
KCSYPYGFFLEPKSTKKEIFELMQTDLEMVTEDLAQKVNRPYLRTPRHKIIRAACLVQQK
RQEFLASVARGVAPNDSPEAPRRNFAGGTWDWEYLGFASPEILRNQSVLGGNDQSENYQN
AGFQQQEYAEFQYRRRHRQRRRGDMHSLRSNTPDPDDPSESTLDTQEGGSSWRHGTSMVS
SASMSILQSSSLHDYTPVSRFENQDLPQALSSLDEDDPNIRLAIQLSLQESGLAMGREAQ
EFLNNEASLGAIGTSLPSRLDPAPRSMEVPRAALSSSELLELGDSLMRLGAVSNPYAGDH
FDNLRRFGEDPGGLFSSSSDTNSTSYDPSVNANLLGNIMAWFHDMNPQSIALIPSMPSET
DLDSQPLSTAEEVEPSKTEEVPQTQEEEHVLFEAAAVNEGNRAAQVEEGAVQETTGARDS
EPGHEDPHCSAELSLTSTSECDPSSNPQISTSSTTTPEWEEQVHLV
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
atggggaacactgcgactaagtttcgcaaggcacttattaatggagacgagaccctggcc
tcgcagctctacgagagcaacccgcagttcaaggagtccctggatccaaatacctcatac
ggagaaccctatcaacacaacactccaatgcactatgctgctcgacatgccatgagtcga
ctgctcagattgtttctcttcagcaaggatggcaaccccaacaagcgcaacgtgcacaac
gagacagcaatgcacctgctgtgcatggggccgcagatcatgctggcagaaggggcgctg
cacccccgtcttgcacgaccctatgaggacgagcacaagagggcagagtgcctgcagatg
atcctcaagtggacaggggccaagctagctcagggagagtacgagagagccgacgtcaat
gccacagacaacaagaaaaacacctctttgcactacgctgctgcctcagggatgaaaaca
tgtgtagagtttttagtgaaaaatgatggagacctgtttgcagaaaatgagaataaggac
accccatgtgactgtgcagaaaagcagcaccataaagaactggcccttagcctggagtct
cagatggtcttctctagggatcctgaagctgatgatatagaggcagaatatgctgctctg
gataagagagagccattcgagggcctgaggcttcaggaactccgcagactgaaagatatg
ctgatagtggagacggcagacatgctccaggcgcctctcttcactgctgaagccctgctc
cgagcacatgactgggacagggagaagttgcttgaagcatggatgtctaatgctgaggac
tgttgccagcgttcaggtgttcagatgcccacccctcccccgacagggtacaatgcctgg
gacaccctgccatccccccggaccccccgcaccacccgctcctctgtcacctcccctgac
gagatcagcttgtcacccggcgatgaggacttgcctatgtgtggcatctgcatgtgcaat
attactgtgttcgaagacccagtggacatggcttgtggacacgagttctgcagggcatgc
tgggaagggtttttgaatctgaagatccaggaaggagaagcccataacatcttctgccca
gcctatgactgtttccagctggttcctgtggacgtcatagagagcgtggtctccagagag
atggacaagcgctacctgcagtttgacattaaggcttttgtagaaaacaaccctgccatt
aggtggtgtcccacagcaggctgtgaaagagcagttcggctaacaaggccggggactggt
atcgctgggtctgactcactaaacttccctttactaagagcacctgcagtcgactgtgga
aagagccacctcttctgctgggagtgtctaggagaagcccatgaaccctgcgattgccaa
acctggaagatgtggttgcagaaagtttcagaaatgaaaccagaagaactagtcggcgtg
aatgaggcttatgaagatgcagccaactgtttgtggttactcaccaactccaaaccctgc
gccaactgcaagtctccaattcagaagaatgagggctgcaaccacatgcagtgtgccaag
tgcaaatatgacttctgctggatctgcttggaggagtggaagaaacacagctcctccact
ggagggtattaccgctgtacccgttacgaggtcatccagcaggtcgaagagcagtccaag
gagataacagtcgaggctgagaaacagcacaagacctttcaggaacttgaccgatttatg
cactattatacaaggtacaagaaccacgagcatagttaccagttggaacaacgtctacta
aaaacagccaaagaaaagatggaacagctgagcagagccctcagtggagcagaaggaggc
cctgataccaccttcattgaagatgcagtccgtgagctcttgaaaactcggcgtatcctc
aagtgttcttatccgtacggattctttcttgaaccaaaaagcacaaagaaggaaatattt
gagcttatgcagactgacttggagatggtaacggaagaccttgctcagaaagtcaaccgg
ccttacctccgcacccctcgccataaaataataagagcagcatgccttgttcagcaaaaa
agacaggagttcctggcctctgtggcccgtggcgttgcccctaatgactctcctgaagct
ccacggcgcaactttgctggagggacctgggactgggaatacttaggttttgcatcgcct
gagatcctgaggaatcaatcagtacttggagggaatgatcaaagcgaaaactatcaaaat
gcaggattccagcagcaggaatatgctgagtttcagtaccgccggagacacaggcagcgg
cgccgtggagacatgcatagtctgcgcagcaatactccagatcctgatgaccccagcgag
agcactttagatacccaggagggtggaagcagctggagacacggtacctccatggtgagt
tctgcttctatgagtattctgcaaagctcttcacttcatgactatacccctgttagtcgc
tttgaaaaccaagacttgccgcaggctctgagctctcttgatgaagatgacccgaatatt
cgcctagccatccagctctcactgcaggagtccgggctggccatgggcagagaggcccaa
gagttcctcaacaatgaagcctcattgggggccattggcacttccctgccctcccggctg
gacccagccccccggagcatggaggtccccagggcggctctgagcagctctgagctgctg
gaactgggtgacagtttgatgaggctgggggctgtgagcaacccctatgctggggaccac
tttgacaacctgcgccgtttcggggaggatcctggggggcttttctcttcctccagcgac
acaaactccacaagctacgatccttctgtgaatgcaaacctcctggggaacatcatggcc
tggtttcatgacatgaaccctcagagcatagcacttatcccctccatgccctcagaaaca
gacctggactcgcagcctctcagcactgcagaagaagtggagccctccaaaacagaggag
gtgcctcagacccaggaggaagaacatgtcctctttgaagccgcagctgtcaatgaaggt
aacagggctgcccaagtagaagagggtgctgttcaggagaccactggtgcacgggattca
gaaccaggacatgaagacccccactgtagcgcagaacttagtctaacaagcacgtcagaa
tgtgatcccagttccaatcctcaaattagtaccagtagtactactacgcctgaatgggag
gagcaggtccacctggtttga
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