Polyodon spathula (Mississippi paddlefish): 121313249
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Entry
121313249 CDS
T07273
Name
(RefSeq) E3 ubiquitin-protein ligase UBR5-like
KO
K10593
E3 ubiquitin-protein ligase EDD1 [EC:
2.3.2.26
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121313249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121313249
Enzymes [BR:
pspa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
121313249
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
HECT type E3
121313249
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
E3_UbLigase_EDD
MLLE
zf-UBR
Motif
Other DBs
NCBI-GeneID:
121313249
NCBI-ProteinID:
XP_041101521
LinkDB
All DBs
Position
3:complement(58705700..58796746)
Genome browser
AA seq
2788 aa
AA seq
DB search
MTSIHFVVHPLPGTEDQLNDRLREVSEKLNKYNLNSYPPLNVLEQATIKQCVVGPNHAAF
LLEDGRICRIGFAVQPDRLELGKPDGNDGSKLISGSGTGRTSRPGRTSDPPWFLSGSDTL
GRLAGNTLGSRWSSGVNGGGGGSSGRSSTAARDSRRQTRVIRTGRDRGSGLLGSQPQPVI
PASVIPEELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSRDDEDGDDGDDTASE
SYLPGEDLMSLLDADIHSAHPSVIIDADAMFSEDISYFGYPSFRRSSLSRLGSSRVLLLP
LERDSELLRERESVLRLRERRWLDGASFDAERGSTSREGELPLDKKNIPVQSPVSLGEEL
QWWPDKDGTKFVSIGALYSELVAVSSKGELYQWKWSEAEPYRNSQNPSMHHPRAAFLGLM
SDKITLLSVNIIRATVATENNKVATWVDDTLSTVASKLEHSTQTFPELQGERIVSLHCCA
LYTCAQLENCLYWWGVVPFSQRKKMLEKARAKNKKPKSSAGISSMPNITVGTQVCLRNNP
LYHTGAVAFSINAGIPKVGVLMESVWNMNDSCRFQLRSPESLKNLEKTSKATETKTENKP
ESVKTEMGPPPSPASTCSDTSSIASSASLPYKRRRSTPAPKEEEKVNEEQWCLREVVFVE
DVKNVPVGKVLKVDGAYVAVKFPGTSNSVSNQSTSTSETDPSSLLQDCRLLRIDELQVVK
TGGTPKVPDCFQRTPKKLCIPEKAEILAVNVDSKGVHAVLKTGNWVRYCIFDLATGKAEQ
ENNFPTSSLAFLGQNERNVAIFTAGQESPVILRDGNGTIYPMAKDCMGGIRDPDWLDLPP
ISSLGMGVHSLTNLPANSTIKKKAAIIIMAIEKQTLMQHILRCDYEACRQYLMNVEQAVL
LEQIPQSLNALLGHRCDGNRNILHACVSVCFPTSNKETKEEEEAERSERNTFAERLSAVE
AIANAISVVSSNSSANRTGSSSSRSLRLREMMRRSLRAAGLGRHESGPSSSDHQDPVSPP
IAPPSWVPDPPPMDPDGDIDFILAPAVGSLTTASAGTGQGPSTSTIPGPSSEPSLVESKD
RKANAHLILKLMCDSMGLRPYLRELLSAKDARGMTPFMLAVSGRAYPAAITILEAAQKIA
KGETTSIEKEDAVFTEVICPPGTNPDDSPLYVLCCNDTCSFTWTGAEHINQDIFECRTCG
LLESLCCCTECARVCHKGHDCKLKRTSPTAYCDCWEKCKCKTLIAGQKSARLDLLYRLLT
TTNLVTMPNSRGEHLLLFLVQTVARQTVEHCQYRPPRIREDRNRKAANAEDSDMPDHDLE
PPRFAQLALERVLQDWNALKSMIMFGSQENKDLLSASSKIGHLLPEEQVYLNQQSGTIRL
DCFTHCLIVKCTSDILLLDTLLGTLVKELQNKYTPGRREEAINVTMRFLRSVARVFVILS
VEMASSKKKNNFIPQPIGKCKRVFQALLPYAVEELCNVAESLIVPVRMGIARPTAPFTLA
CTSIDAMQGSEELFSVEPLPPRPSPDQSSSSSLSQSSYIIRNPQQRHISQAQPVRGRDEE
RDDIVSADVEEVEVVEGVAGEEDHHDEQEEQGEENAEGQHDEHDEDGSDMELDLLAAAET
ESDSESNHSNQDNASGRRSVVTAATAGSEAGASSVPAFFSEDDSQSNDSSDSDSSSSQSD
DVDQETFMVDEPLERTTNSSHANSAAQAPRSMQWAVRNTQNQRTTSSAPSSTSAPAASST
GLIYIDPTNLRRSGAISTSAAAAAAALEASNSSSYLTSASSLARAYSIVIRQISDLMGLI
PKYNHLVYTQIPAAVKLTYQEAVNLQNYVEDKLIPTWNWMVSIMDSTEAQLRYGSALSSA
GDPGHPSHPLHASQNSARRERMTAREEASLRTLEGRRRATLLSARQGMISARGDFLNYAL
SLMRSHNDEHSDVLPVLDVCSLKHVAYVFQALIYWIKAMNLQTILDTPQLERKRTRDLLE
LGLDNEDSEHENDEDTNQSSTLNEKDDDPAPAESGQNHAFFRRSDSMTFLGCIPPNPFEV
SLAEAIPLADQPHLLQPNARKEDLFGRPSQGLYSSSYSTKGLTEVTVDRNCLEVLQLSRF
SYSANMKNVMSMQSRQKADGQTLPEGETESTKPGPSAHDLAAQLKSSLLAEIGLTESEGP
PLASFRPHCSFMGMVISHDMLLGRWRLSLELFGRVFMEDVGAEPGSILTELGGFEVKESK
FRREMEKLRNQQSRDLALEVDRDRDLLIQQTMRQLNSHFGRRCTTTPMAVHRVKVTFKDE
PGEGSGVARSFYTAVAQAFLSNEKLPNLDCIQNVSKGMQTSNLMQRLRNRDRERERRSGG
LRAGSRRDRDRDSRRQLSIDTRPFRPALEGNPSDDPDPLPAHRQALGERLYPRVQAMQPA
FASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAHGRENGADSILDLGLIDASD
KTQQESRKRHGSSRSVVDMELDDTEDGDDNAPLFYQPGKRGFYSPRPGKSTEARLNCFRN
IGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQLILASQSGDA
EAVFAAMDLAFAVDLCKEEGGGQVELVSGGVNIPVTPLNVYEYVRKYAEHRMLVVAEQPL
HAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDESGENAEKLLQFK
RWFWSIVEKMSMAERQDLVYFWTSSPSLPASEEGFQPMPSITIRPPDDQHLPTANTCISR
LYVPLYSSKQILKQKLLLAIKTKNFGFV
NT seq
8367 nt
NT seq
+upstream
nt +downstream
nt
atgacgtctatacacttcgtggttcatccgttgcccgggaccgaggaccagctcaatgac
agattacgggaagtttctgagaaactcaacaaatacaacctaaacagttatccccctctg
aatgtgttggaacaggccaccattaaacagtgtgttgtgggaccaaatcatgctgcattt
cttctggaggatggtcgcatctgtagaattggtttcgcagttcagcctgacaggttggaa
ctgggtaaacctgatggcaatgatggttcaaagttgatcagtggttcagggacaggaagg
acttccaggccaggcaggacaagtgatccgccatggtttctgtctggttctgacacactg
ggcaggctggcaggcaatacccttgggagccgctggagctctggggtgaatggaggtgga
ggtggctcctctggaagatcctccacagcagcgagagactcgaggcgtcagaccagagtg
attcgcactgggcgtgataggggatcagggctcctgggcagtcagcctcagcctgtcatc
ccagcatcagtcattcctgaggaactcatctcccaggcccaggttgtactgcagggaaag
tccaggagtgtgatcattcgtgaactacagagaactaatctggatgtaaatcttgctgta
aacaacttgctgagtcgggatgatgaggatggagatgatggtgacgacacagcaagtgaa
tcttatttacccggagaggatctaatgtctctgctagatgcagacatccactccgcgcac
cccagtgttatcattgatgcggatgccatgttttctgaagacatcagttactttggttat
ccctcatttcgtcgttcttctctatccagacttggctcatcacgagttctccttcttccc
ttagagagagactcggagctgttgcgtgagcgtgagtctgttttacgtttgcgtgagcgg
cggtggcttgatggagcctcttttgatgccgaaagaggctctacaagcagggaaggggag
ctgcccctagacaagaagaatatccctgtgcagagccccgtttctcttggggaagagcta
cagtggtggcctgataaggatgggacaaagtttgttagcattggtgccctctactccgag
ctggtggcagtgagttccaagggagagctgtaccagtggaaatggagtgaagctgaacca
tacagaaactctcagaatccttccatgcatcatcccagggctgcttttctagggttaatg
agtgataagattactcttctttcagtaaatattatcagagccactgttgccacagaaaat
aacaaggtggcaacttgggttgatgacactctcagtacagtagcttctaaactggagcac
agcacccagacctttcctgagctacagggagagcggattgtctccttgcactgctgcgct
ctttatacctgtgcgcagctggaaaactgtctatattggtggggtgttgtgccctttagt
cagcggaaaaagatgcttgaaaaggccagggcaaagaacaaaaagccaaagtccagtgca
ggcatctcttcaatgccgaatattactgttggaacgcaggtgtgtcttcgaaacaacccc
ctttaccacactggtgcggttgccttttccatcaatgctggtattcccaaagttggagtg
ctgatggagtctgtgtggaatatgaacgacagctgtaggttccagctcaggtcaccagag
agtttgaaaaacctggagaagaccagcaaagctacagaaacaaagactgaaaacaaacct
gagtctgtgaagactgagatgggacctcctccttccccagcttccacctgtagtgacact
tcttccattgccagcagtgcatccctgccttataagcgacggcgctcaaccccagcacct
aaagaagaggagaaagtgaatgaagagcagtggtgcctgagagaagttgtgtttgttgaa
gatgtgaagaatgttccggttggaaaggtactaaaagtcgatggtgcatatgttgctgtg
aaatttccaggaacgtctaacagcgtgagcaaccagagcacctccacttcagagactgat
ccctcctcactactgcaggactgcagactgctgagaatagatgaactacaggtagtgaaa
actggtggaacgccaaaggttccagactgctttcaacggactcctaaaaaactgtgtatc
cctgaaaaagctgaaattctggcagtgaatgttgattctaaaggggtgcatgctgtgtta
aagactggcaactgggtgagatactgcatctttgacctggcgacaggaaaagctgaacag
gaaaataactttcctacaagcagccttgcatttttgggacagaatgagcgaaatgtggca
atttttactgctgggcaggaatcacctgtcattctccgggatggaaatggcaccatctac
ccaatggctaaagactgcatgggtggtattagagatcctgattggttagatcttccgcct
atctctagccttggcatgggagttcattcattaaccaaccttcctgcaaattccacaatc
aaaaagaaagctgctattatcataatggctattgaaaaacaaactttaatgcagcacatt
ttgcgatgcgactatgaagcctgcaggcagtatctaatgaatgttgagcaggctgttctg
ctggagcagatacctcaatccctgaatgcactccttggccacagatgtgatggaaaccgc
aatatcctccacgcttgtgtatctgtgtgcttcccaaccagtaataaggaaacgaaagag
gaggaagaagctgagcgttctgaaagaaacacgtttgcagagaggctgtctgcagttgag
gctattgccaatgcaatctcagttgtgtcaagcaacagttctgcaaaccgaactggatcg
tccagtagtaggagtctgagactacgtgaaatgatgaggcgatctctaagagctgcaggc
ttgggtcgacatgagtctggaccttcttccagtgaccaccaggacccagtgtctcctcct
atcgccccacccagctgggtcccggacccacctccaatggatccagatggtgacattgat
tttatccttgcccctgctgtgggatctctcactacagcatcagctgggactggccaaggc
cccagcacatccaccataccaggcccttcatctgaaccctcattagtggagtccaaggat
cggaaagccaatgcccatttaatactcaaattgatgtgtgacagtatgggtcttcgtcca
tatctccgtgaattgctttctgctaaggatgcaagaggaatgactccatttatgctggcc
gttagtgggagagcatatccagctgctataacaattcttgaagctgcacaaaaaatagct
aaaggtgagactacatccattgagaaagaggatgctgtatttacagaagtgatctgccca
cctggaaccaatccagatgattctccactgtatgtgctttgctgcaatgacacctgcagt
tttacatggactggagcagaacacatcaaccaggatatttttgagtgtcgaacatgtggt
ttgttggagtcactttgctgctgcacagaatgtgccagagtttgccacaagggacatgac
tgcaaactcaagagaacatcaccaacagcatactgtgactgctgggagaagtgcaaatgt
aaaactttgatagcaggacagaagtctgcacgtcttgatctgctctacaggttgcttacc
accactaaccttgtgacaatgccaaatagcaggggagaacatctccttctgtttttggtg
cagaccgtggccaggcaaactgtagaacactgccagtatcgacccccccgaattagagag
gatagaaaccgcaaggctgctaatgctgaagattcggatatgcctgatcatgacctggag
cctcctcgttttgcccaacttgcccttgagagagtcctgcaggactggaatgctttgaaa
tccatgatcatgtttggatctcaggaaaacaaagatctgttaagtgcaagtagcaaaata
ggtcatctacttcctgaagagcaagtatatcttaaccagcaaagtgggaccatcaggctg
gactgtttcacccactgcttgattgtaaaatgtacttcagatatattgcttttagatact
cttctaggaactctagtaaaagagcttcagaataagtacactccaggtcgaagagaggag
gcgattaatgtaaccatgaggttcctgcgctctgtcgccagggtcttcgtcattctcagt
gtggagatggcatcttcaaagaagaaaaacaactttattccgcagcctattgggaaatgc
aagcgtgtctttcaggccttgctgccatatgctgtagaggagctgtgtaatgtagcagag
tcactgattgtaccagtcaggatggggattgcaaggccgaccgctcccttcaccctagct
tgcaccagcatagatgccatgcaaggcagcgaagagctgttctcagtggagccccttcca
cccaggccatcacctgatcagtctagcagttcaagcctatctcagtcatcgtatatcatc
agaaaccctcagcagagacacatcagtcaggctcagcctgtccgtggaagagatgaggag
cgggatgatatagtatctgcagatgttgaagaggttgaggttgtggaaggtgttgctgga
gaagaggatcaccatgatgaacaggaggagcaaggggaggagaacgcagagggacaacat
gatgaacatgacgaggatgggagcgatatggagcttgatcttttggcagctgcagaaacg
gaaagcgacagcgaaagtaaccacagcaaccaggacaatgccagtggtcgaaggagtgtt
gtcacagcagccactgcagggtctgaagcaggtgccagcagtgtccctgccttcttttca
gaggacgattcccaatccaacgactcgagtgactctgacagcagcagcagtcagagtgac
gatgttgatcaggagacctttatggttgatgagccactggaaaggaccaccaacagctcc
catgccaacagcgctgcacaggctcctcgctccatgcagtgggcagtgcgcaacacacag
aaccagcgaacaacgagcagcgccccttccagtacatctgccccagcagccagctctaca
ggattaatatatattgacccaactaatctgcgtagaagtggagccatcagcaccagtgca
gctgcagcagctgctgctctcgaagccagcaattcaagcagctacttgacctctgccagc
agtcttgccagggcctacagcatcgtcatccgccagatttcagacctcatgggtttgatc
cccaagtacaaccacctggtgtatacccagatacctgctgcagtgaagctcacataccag
gaagctgttaatttgcagaattatgtggaagataaacttatccccacttggaactggatg
gtcagtatcatggactccactgaagctcagctgcggtatggctctgcactgtcttcagct
ggggaccctgggcaccccagccatcctctccatgcttcacagaactctgctaggagagag
aggatgactgcacgtgaggaggccagtttaagaacactggagggcagaagacgtgccaca
ttgctaagtgctcgccaggggatgatatcagcacgtggcgatttcctaaactacgccctc
tctctgatgcgctctcacaacgacgagcattccgatgtcttgccagttctggatgtctgc
tcactcaaacatgtggcgtatgttttccaagcacttatttattggattaaagcaatgaac
ctacagaccatactggatacgcctcagctagagaggaaaagaactcgtgacttgttggag
ctgggcttggacaatgaagactctgaacatgaaaatgatgaagatacgaatcagagctct
accctgaatgaaaaggatgatgaccctgccccagcagaaagcggtcagaaccatgctttc
ttccgacgatcagattccatgaccttccttggttgtatccctccaaacccatttgaagta
tctctggcagaagctatacccctggctgaccagcctcacctgttacagccaaatgcaaga
aaggaagatctctttgggcgtccaagccagggtctgtattcctcctcttacagcacaaaa
gggctgacagaggtgactgtggacagaaactgccttgaggttctccaactaagtcgcttt
tcatactctgccaatatgaagaatgtcatgagcatgcagtctcgacagaaagctgacggc
cagactttgccagaaggggagacggagagcacaaagcctggaccctctgctcatgacctt
gcagcacaacttaagagtagcctgttggcagagattgggcttactgagagtgagggacct
ccactggcttcattcaggccgcattgtagttttatgggaatggtgatatctcacgacatg
cttctcggacgatggcgtctatctttagaactttttggacgagtattcatggaagatgtt
ggtgctgaacctggatcgattttgactgagcttggtggctttgaagtgaaggaatcaaaa
ttccgccgggaaatggagaaactgcggaaccagcagtcaagagacttggcattggaagtg
gatcgggacagagatcttctgattcagcagaccatgaggcagctgaacagccacttcggc
cgcaggtgcaccacaactcccatggcagtgcacagagtgaaggtcacgtttaaagacgag
ccaggagaggggagcggagtggctcgaagtttctacactgctgtagcgcaggcattcctg
tccaatgagaaacttcccaatcttgactgtatacagaatgtcagcaagggaatgcagact
agtaatcttatgcagcgactgaggaacagagacagggagcgagaaagaagaagcggtgga
ctgcgagcaggttctcgtagagacagggacagggattcaaggaggcagctgtcaatagac
acccggcccttcagaccagcattagaaggcaatcctagtgatgaccctgacccgctccca
gcacatcgacaggcacttggggagaggctttacccacgagttcaagccatgcaaccggca
tttgctagtaaaatcacaggaatgttgttggaactctcccctgcacagcttttgttgctt
cttgctagtgaagattccctacgcgcccgtgtggatgaggcaatggaacttattattgca
catggaagggaaaatggtgctgacagtatattggaccttggcttgattgatgcttctgac
aagacacagcaagagagcagaaaacgacatggctccagtcgcagtgtggtggatatggaa
ctggatgatacagaagatggtgatgacaatgcaccacttttctatcaacctggaaaacga
ggcttctattcaccgcggccaggcaagagcacagaggcacggcttaattgcttccgaaac
attggcagaatacttgggttatgcctgcttcagaatgaactgtgccctataacattaaat
aggcatgttatcaaggtgttattaggtagaaaggttaattggcacgattttgctttcttt
gatcccgtgatgtatgagagtttacggcaactaatcctggcttctcagagtggggatgcg
gaagcagtctttgctgcaatggatctggcattcgcagttgacctctgtaaagaggagggg
ggaggacaggtggaacttgtatccggtggtgtaaatataccagttactcctctgaatgta
tatgaatatgtccggaaatatgcagaacaccggatgttggtggttgcagagcagcctctc
catgcaatgaggaaaggactgctggatgtacttcctaaaaactcccttgaagaccttaca
gctgaggatttcaggctactggtgaatggctgtggagaagtgaacgtgcagatgctcatc
agctttacttcctttaacgatgaatccggagaaaatgctgagaagcttttgcagttcaag
cgttggttttggtccattgtagagaagatgagcatggctgaaagacaagacctggtttac
ttctggacatcaagcccatcgttgcctgctagtgaggagggattccagcccatgccatcc
atcacaattcgacccccggatgaccagcacttgccaactgcaaatacttgtatctcccgc
ctctatgtgccactctattcctccaaacagattctcaaacaaaaactgttactagccatt
aaaaccaagaacttcggttttgtgtag
DBGET
integrated database retrieval system
