Polyodon spathula (Mississippi paddlefish): 121313287
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Entry
121313287 CDS
T07273
Name
(RefSeq) transcription initiation factor TFIID subunit 2 isoform X1
KO
K03128
transcription initiation factor TFIID subunit 2
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121313287
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pspa01002
]
121313287
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121313287
03036 Chromosome and associated proteins [BR:
pspa03036
]
121313287
Peptidases and inhibitors [BR:
pspa01002
]
Metallo peptidases
Family M1
121313287
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
121313287
Coactivators
SAGA/TFTC/STAGA complex
121313287
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
121313287
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M1
SR-25
Peptidase_M1_N
CCDC106
Zip
Motif
Other DBs
NCBI-GeneID:
121313287
NCBI-ProteinID:
XP_041101599
LinkDB
All DBs
Position
3:complement(62653482..62700985)
Genome browser
AA seq
1228 aa
AA seq
DB search
MSSIRTLQNVIETLSRMNRKKGDKGFESPRPYKLTHQVVCINNINFQRKSVIGHVELTIF
PTVTNLNRIKLNSKQCRIYRVRVNDLEAPFIYNDPTLEVCHHESKQRNLNYFSNAYAAAV
SAVDPDSGNGELCIKVPSELWKQGDELKVLKVYIEFSLDQPKGGLHFVVPDVEGSMAERG
AHVFSCGYQNATRFWFPCVDSYSELCTWKLEFTVDAAMVAVSCGDLVETVYTHDMRKKTY
HYMLPIPTAAPNISLAVGPFEILVDPYMHEVTHFCLPQLLPLLKHSMSYLHEIFEFFEEI
LTCRYPYSCFKTVFVDETYVQVSSYASMSIFSTNLLHSAMIIDQTPLTRRCLAEALAQQF
FGCFISRMSWADEWVLKGISGYIYGLYLKKTFGVNEYRHWIKEELDKIVDYELKTGGVLL
HPIFAGGKEKDNPMPNLHFSIKHPHTLCWEYYKMFQCKAHLVMRLIENRISMEFMLQVFN
KLLSLASTASSQKYQSHMWSQMLVSTSGFLKSISNVSGKDIGPLIKQWVDQNSVVKFFGS
FAFNRKRNVLELEIKQDYTSPGTQKYVGPIKVTVQELDGSFNHTLQIEENSLKHDIPCHS
KSRRNKKKKIPLMNGEEVDMDLSAMDADSPLLWIRIDPDMSILRKVEFEQADFMWQYQLR
YERDVVAQEESIAALEKFPTPASRLALTDILEQEQCFYKVRMEACFCLAKIANSMVSTWT
GPPAMKSLFTRMFCCKSCPNIVKTNNFMTFQSYFLQKTMPVAMALLRDVHNLCPKDVLNF
ILDLIKYNDNRKNKFSDNYYRAELIDALANSVTPAVSINNEVRTLDNLNADIRLILEEIT
RFLNMEKLLPSYRNTITVSCLRAIRILQKNGHIPSDPSLFKSYAEYGHFVDVRLAALEAV
VDYTQVDRSSEELQWLLNMVQNDPVHYIRHKILSMLAKNPPFTKTSESSLCNETLVDQLW
KLMNSGTSHDWKLRCDAVNLYYTLFGLSRPSCLPLPELGLVLNLKEKKAVLNPTIKTEPG
ASNGELTNNPNTHGHVICFPNSEDEQLASDLPCSVPVPPQGMKRKAETPLGSPLEPGQIL
EKEEDSSKVKLKIRFSNSQEEEDIDMDTVHDSQAFIYHHLNMLERPSTPGKEPPSTEPTI
LSMPATPLSAFSKETNSSSKHSDHHHHHHHHHEHKKKKKKHKHKHKHKHKHESKDKEKDK
EKEKDRDILAFTNSPASGRSVHSPSLSD
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
atgtctagtattcgtacactccaaaacgtcattgagacactgagcagaatgaacaggaag
aaaggagacaaggggtttgaaagcccgcgaccatacaaattaactcaccaggtggtctgc
atcaacaacataaactttcaacgaaaatcagtcattggacatgtggaactgacaatattc
ccaactgtaaccaacttaaacagaatcaaactcaacagcaagcaatgcagaatttacagg
gtccgagttaatgaccttgaagcacctttcatttataatgacccaaccttagaggtctgt
caccatgaatcaaagcagagaaatctgaattacttttctaatgcctatgcggctgcagtc
agcgctgtggacccagacagtggaaatggagagctctgcatcaaggtgccatccgaactg
tggaagcagggagatgaattgaaggtgctgaaggtatacattgagttttccctggaccag
ccaaaaggaggacttcactttgttgtgcctgatgtggaaggcagcatggcagagagagga
gcccatgttttctcatgtggataccaaaatgcaacaaggttctggtttccctgtgtggac
tcttattcagagctttgcacatggaagttggagttcacagttgatgcagcaatggtagca
gtttcctgtggagatctggttgagacagtctacacccatgacatgaggaagaaaacttac
cactacatgctgcctattccaactgcagctcccaacatatcgcttgctgttgggccattt
gagattcttgtggacccatacatgcatgaggttacacacttctgtttgcctcagctcctt
ccattactcaaacactcaatgtcctaccttcatgagatctttgaattctttgaggagatc
cttacctgtcgatacccatattcctgctttaagacggtgtttgtggatgaaacctatgta
caagtatcatcgtatgcatccatgagtattttcagtacaaatcttctgcacagtgccatg
attatagatcagacccccctgaccagacggtgtttagctgaagccctggcacagcagttc
tttggctgctttatatcccgaatgtcctgggctgatgaatgggttctgaaagggatatct
ggatacatttatggactgtatttgaaaaagacatttggagtaaatgagtatagacactgg
atcaaagaggaattggacaaaatagtggactatgagttgaagacgggaggggttttactc
cacccaatatttgctggaggcaaggaaaaggacaaccccatgccaaaccttcatttttca
ataaaacacccccacacactgtgctgggaatactacaagatgttccagtgtaaagcccac
cttgtgatgagactgatagaaaacagaatcagcatggagttcatgctacaggtgtttaac
aaacttttgagtctggcgagcacagcatcgtctcagaagtaccagtctcacatgtggagt
cagatgcttgtgtcaacatctgggttcctgaaatcgatctccaatgtctctgggaaggac
atcggtcccttaattaaacaatgggtagaccagaactcagtggtaaagttctttggcagc
tttgccttcaacaggaaaagaaatgtcctggaattagaaataaaacaggattacacctcg
ccaggcacccagaaatatgtgggtcccatcaaagtgacagtgcaggagctggacggatca
ttcaaccatacattacagattgaagaaaacagcctcaaacatgatatcccatgccactca
aagagcagacgaaataagaaaaagaaaatcccactgatgaatggagaagaagtggacatg
gatctgtccgcaatggatgctgattcccctttgttgtggataaggattgacccagacatg
tcaatattaaggaaagtagagtttgaacaggcagacttcatgtggcagtaccagttacgc
tacgagagagatgtagtggcacaggaagaatccatagctgctctggagaaattccctaca
ccagcatctcgtttggcgctcacagacattcttgaacaggagcagtgcttctacaaggtc
agaatggaggcatgcttctgccttgccaagattgcaaactcaatggtgagcacatggaca
ggcccaccagctatgaagtcactcttcactcggatgttttgttgcaagagttgcccgaac
attgttaagaccaacaactttatgacctttcaaagctactttctgcaaaagactatgcca
gtggctatggccttgcttcgagatgtgcacaacctctgcccaaaggatgtgttgaacttt
attttagatctaatcaaatataatgacaacaggaagaacaagttttctgataattactat
cgtgctgaactgattgatgcccttgccaattccgtgacacctgcagtcagtataaacaac
gaagtgcgcactttggacaatttaaatgctgacatccggcttattctagaggagattacc
aggtttttaaacatggagaagctgctgccaagctacaggaacaccatcactgttagttgc
ctgagagctatccgcattttgcagaagaatggccacattcccagtgatccatctcttttt
aaatcctatgctgagtatggccactttgtggatgttcgtcttgctgccttggaagcagtt
gttgattacacacaagttgacaggagttctgaggaacttcagtggttgcttaatatggtg
cagaatgatcctgtacattacatcagacataagatcttgagcatgctggcaaaaaatcca
ccgtttacgaagacgtccgagtcttctctttgcaacgagacccttgttgaccagctatgg
aaactgatgaattcaggtacctcccatgattggaaacttcgctgtgatgctgtcaatctg
tattacactctatttggcctcagtagaccatcatgcctgcctttgcctgagcttgggcta
gtcctcaatcttaaggaaaagaaagcagtgcttaatcctaccatcaaaactgaaccagga
gccagcaatggagagttgacaaacaatccaaatacacatggacatgtgatatgctttcca
aacagtgaagatgagcaactcgccagtgatttgccatgcagtgtgccagtcccaccacag
ggaatgaagagaaaagcagagaccccactaggatccccgctggaacctggtcagatactg
gagaaggaagaggacagcagtaaagtcaaattaaaaatcagattctcaaattctcaagag
gaggaagatattgatatggacacggttcatgacagtcaagcttttatctatcatcatcta
aacatgcttgaaaggccatcaacgccaggaaaagaacccccatccacggagcccactata
ctgtccatgccagcaactccactctctgcattcagtaaagaaacaaactcatcctcgaaa
cacagcgaccaccatcaccatcaccaccaccaccatgaacacaagaagaagaagaagaag
cacaaacacaagcacaagcacaaacacaagcacgagagcaaggataaggagaaagacaaa
gaaaaggaaaaagacagagacatcctggcttttaccaacagcccggccagtggacgttca
gttcattcaccctctctttcagattga
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integrated database retrieval system
