Polyodon spathula (Mississippi paddlefish): 121313290
Help
Entry
121313290 CDS
T07273
Name
(RefSeq) collagen alpha-1(XIV) chain-like isoform X1
KO
K08133
collagen type XIV alpha
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pspa00535
]
121313290
Proteoglycans [BR:
pspa00535
]
Extracellular matrix (ECM) proteoglycans
Others
121313290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
DUF4959
Fn3_nematode
Motif
Other DBs
NCBI-GeneID:
121313290
NCBI-ProteinID:
XP_041101604
LinkDB
All DBs
Position
3:62801772..62880280
Genome browser
AA seq
1847 aa
AA seq
DB search
MQVFGLRIRTWLPLTFLAVTAHFASQAQGQVASPTRLQFNILSEDSVQIRWKAPRGKVQG
YKLSVTPVKGGTTQELHLQKGDNTAIIQGLIADLEYSVNVIAISRNQESEPAQGKFTIKI
SKETSEEVSSETQTLREDTSSAESDNEILGGEQYICKTAAIADIVLLVDGSWSIGRINFR
LVRSFLENLVSAFNVGSDETRVGLAQYSGDPRIEWHLNAFNSKEALIDAVKNLPYKGGNT
LTGLALTYILENSYKPESGARPGVPKIGILITDGKSQDDVIPPAKSLRDAGIELFAIGVK
NADESELRAIASDPDESHVYNVADFNIMSSIVESLTKTVCDRVEEQEKEIKAIYNVTASL
GAPQDLVTSEVTARSFRVSWIHAPGNVEKYRVVFYPSRGGQPEEVVIDGTENTVVLKNLM
SLTEYQIAVFAVYTSAASEGLRGSETTLSLPMVDDLKLYDVTHNSMRAKWKGVPGASGYM
ILYSPLTEADVADEKEVKVPDSVTDIELDGLTPSTEYTVTLYAVYGEEASDPMTVQETTL
PLSPPRNLRFSEIGHSIARVTWDAASKNARGYRIMYVKSDGSVTNEVEVDQITTSLLRQL
ASQTEYTVAIFSIYDEGQSEPLTGSFSTKPVPSPLNLKLSDVSRNSLTVRWQHAAPDIVM
YRLSWVPTVGGEARELVLSGDVDTQVLDGLLQRTEYEVSLSAIFKDETESDAVAVLGTTL
VRSAVRNLAVGNETTFSLQVTWDPPDQNVHQYRVSYVSLRGDRDEEAVMVPGKENTLLLQ
PLLSDTEYRVTVTPVYADGDGVSSSSEGRTLPLSAPSNLRVSEEWYNRFRITWDAPPSPT
MGYRIVYQPLTAPGPALETFVGDDVNTMLILNLLSGTEYNVKLIASYTTGSSDALTEKAK
TLYLGVTNLNTYQVEMTSMCGQWQPHRQATLYRVMIESLVDGKKEEVTLGGGASRHCFYD
LMPNTQYKITVYAQLQEMEGPAVTVMDKTFPVPTEPPTSPPTTTLIPTIPVAREVCKAAK
ADLVFLVDGSWSIGDDNFLKIINFLHSTCGALDKIGPDGTQVAIAQYSDDPRTEFKLNSY
NNKETLLEAIQRISYKGGNTKTGKAIQHVKEHIFTVEGGLRRGVPNVLVVLTDGRSQDDV
NKVTKNMQMEGFVIFAIGFADADYGELVNIASKPSERHVFFVDDLDAFQKIEEQLITFVC
EAASTTCPSVLMSGNTLAGFRMMEMFGLVEKQYASVYGVSMEPGTFNSFPCYRLHKDSLI
SQPTKYLHPEGLPSDYTITVLFRILAETPEEPFALWEILNKDNEPLVGVILDNGGKTLTF
FNYDYKEEFQTVTFDSPEIKKIFYGSFHKMHVAISKTTAKVIIDCKQVGEKAINAAGNIT
TDGVEVLGRMVRSRGKRENSAPLQLQMFDIVCSTSWASRDKCCEIPGLRVEADCPAMPHA
CTCSQDSKGPEGPSGPPGAPGIRGPRGERGELGPVGPEGPRGEVGSTGPQGPPGPQGPSG
LSIQGPSGSSGEKGEKGGLGAQGPPGVPGPGGSPGRDGTQGQRGLPGKDGPQGQIGPPGP
IGSPGVPGAIGQSGPTGHLGEQGPPGPIGTKGDKGERGDMQAQAVVRSIARQVCEQLIQS
HMARYDSVLNQIPSQSVSVRAVPGPPGEPGRLGPRGPAGEQGLPGRPGFPGNNGEPGRPG
ERGLSGDKGEKGSPGIGTLGPRGPQGPPGPPGEGRPGSPGQPGRPGNQGTPGRPGNPGST
GQAGPQGYCDASSCMGYNVGGGYGNPSDRVVQLPPSYPQTHDSYEEEEEEEDPYAGYTSY
PQQPQNPYPAPRPVHPETDTTEVRSPGSYRVSRSIAKRKAKSTNMTL
NT seq
5544 nt
NT seq
+upstream
nt +downstream
nt
atgcaggtctttgggctcaggataaggacctggcttcctttgactttcttagcagtgaca
gcccactttgccagccaggcgcagggtcaagttgcttctccaacaagactacaatttaat
atactgtctgaagacagtgttcagattagatggaaagccccaagagggaaagttcaagga
tataaattaagtgtaaccccggttaaaggtggaacaacacaagaattacacctccaaaaa
ggtgataacactgcaattattcagggtctcattgcagacctggaatactcagtaaatgtt
attgcaataagccgaaaccaagaaagtgaacctgcacaagggaaattcacaattaaaatc
tcaaaagaaaccagtgaagaggtgtcttcagagacacagacattaagggaagacacctcc
tcagcagagagtgacaatgaaatattaggaggggagcagtatatttgcaaaacagcagcg
attgcagatattgttctgcttgttgatggctcctggagtataggcaggattaacttcagg
ctggttcggtccttcttggaaaacctggtcagcgccttcaatgttggctctgatgaaacc
agagtaggtcttgcccagtacagtggagatcccagaatagaatggcacttgaatgccttc
aattcaaaggaagcgttgatagatgctgtcaagaatctgccctacaaaggagggaacaca
ctaacaggtctggcattgacatacattttggagaacagctataagcctgaatctggtgct
aggcctggtgtgcccaagatcggtatcctgatcacagacggcaagtcgcaagatgatgtt
attccaccagcaaagagtctacgagatgcaggcattgagttgtttgctattggtgtgaaa
aatgctgatgagagtgaactgcgggctattgcttctgatcctgatgagtcccatgtctac
aatgtagctgatttcaatattatgagctctattgtggaaagcctgaccaagactgtgtgt
gacagagttgaagaacaagagaaggaaattaaagcaatatacaatgtcactgcgtctttg
ggagcccctcaagatcttgttacatccgaagtgacagccagaagtttccgagtcagctgg
atccatgcgcctggaaatgtggagaaatatcgagtggttttctacccttccaggggagga
cagccggaggaggtggttatcgatggaacagaaaacactgtagtgttgaaaaacttgatg
tccttgactgaataccaaattgctgtgtttgcagtgtataccagcgctgccagtgagggc
cttaggggcagtgaaacaacattgtctctgcctatggtcgatgacctcaagctgtacgat
gtaacccacaacagcatgagagccaagtggaaaggggtgccaggagcttctggttacatg
atcttgtacagcccactaacagaagcagatgtagctgatgagaaggaggtgaaagtccca
gattctgtgacagatatagaactggatggactgactcccagtactgagtacactgtgaca
ctgtatgctgtgtatggggaggaagccagtgaccctatgacagtacaagaaactacattg
ccactaagcccccctagaaacctgaggttttcagagattggacacagcattgccagggtt
acgtgggatgctgcttcaaagaacgcaagagggtatcgcataatgtacgtgaagtctgac
ggatcagtaactaatgaggtagaagttgatcaaatcacaaccagcttactgagacaatta
gcatcccagacagaatacacagtcgccatcttctcaatctatgatgaagggcagtccgag
cctctgacaggaagtttcagtacaaagccagtaccatctccgctcaacctcaagctcagc
gatgtgtctagaaacagtttaacagtcaggtggcaacacgctgctccggatatcgtcatg
tacaggctgtcttgggttcccacagttggtggagaagcaagagagcttgttcttagcgga
gatgtggatacccaggtcctcgatggtttgttacaaagaactgaatatgaggtgtcgctc
tctgctatttttaaagatgaaacagaaagtgatgctgttgctgttctgggaacaacactt
gtccgcagtgcagtcagaaatcttgccgtgggcaatgaaactacattcagtctgcaggtg
acctgggatcctccagaccaaaacgtccatcagtacagagtgtcctatgtgtctttgaga
ggagatcgagatgaagaagcggtgatggtgcctggaaaagagaacaccctcctccttcag
cctctgctctctgacacagagtacagggtgactgttactcctgtctatgcggatggagac
ggagtcagctcctcttctgaaggacgaaccttgccactttctgcacccagtaacttgcgg
gtctctgaagagtggtacaatcgcttccgcatcacatgggatgcgcctccttcacccacc
atgggctacagaattgtctaccagcctctgactgccccaggtccagctctagagacgttt
gtaggagatgatgttaacaccatgctgatccttaatctcctcagtggaacagaatacaat
gtcaagttgatagcttcctacacaacaggctccagcgacgcactcacagaaaaagcaaaa
acactgtacctgggtgtgacaaacctaaacacttaccaagttgaaatgaccagcatgtgt
ggacaatggcagcctcatagacaggctacactgtacagagtgatgatcgagtccctggtt
gatggaaagaaagaggaagtgacccttggaggtggagcgtccagacactgtttctatgac
ctgatgcccaacacccagtataaaataactgtctacgcccagcttcaagaaatggaggga
cctgctgtcactgtaatggacaaaacatttcctgtcccaactgagccaccaacctcacct
ccaaccaccacccttattcccacaattcctgttgccagagaagtatgcaaagctgctaaa
gctgacctggtgttcttggtggatgggtcttggagtattggagatgataacttcctcaaa
atcatcaatttcctccacagcacatgtggagctcttgacaagatcggtcccgatggcact
caagttgccattgctcagtacagtgatgatcccagaacagaattcaaactcaactcctat
aacaacaaagaaacactcctggaggccattcagcgcatttcatacaaaggaggaaatacc
aagacaggcaaagccattcagcatgtcaaagagcacatcttcactgtggaaggtggtcta
aggagaggtgtccccaacgtcctggtggttcttactgatggacgatcccaagatgatgtt
aacaaagttacaaagaatatgcagatggagggctttgttatctttgctattggttttgct
gatgcagactatggggagttggtgaacattgcaagcaagcccagtgaaagacatgtattc
ttcgttgatgacttagatgcatttcagaaaatagaagaacagctaattacttttgtctgt
gaggctgcttctacaacctgtccctctgttctaatgagtggcaacaccttagcaggtttc
aggatgatggagatgtttggacttgttgaaaagcagtatgcatctgtttatggtgtctct
atggaacctggaacgttcaacagtttcccatgttacagactgcacaaggattccctcatc
tcacaaccaactaagtatctgcaccctgaagggctgccctctgattacactattactgtc
cttttccgtattctggctgagacacccgaggagccctttgccctctgggagatcctcaac
aaagacaatgagcccttggttggagtaatccttgacaatggaggaaaaactcttactttt
ttcaactatgactacaaggaggagttccagactgtgacatttgacagtcctgaaatcaag
aaaattttctatggaagttttcacaagatgcatgttgctatcagcaagaccactgccaag
gtcattatcgactgcaaacaggttggagagaaggctatcaatgctgcaggtaacatcacc
actgatggtgtggaagttctgggcagaatggtgaggtccagagggaaaagagaaaactct
gctccgttacagctgcagatgttcgacatagtttgctccacatcttgggccagcagagac
aagtgctgtgagatcccaggactgagagttgaagcagactgcccagccatgccacatgcc
tgcacctgttctcaggacagcaaaggacctgaaggtccctctggaccaccgggtgcacca
ggtatcaggggcccaagaggggagcgtggagaacttggcccagtgggaccagaagggcct
cgtggtgaagttggctccactggacctcagggacctcccggccctcagggacccagcggg
ctttccattcaaggaccttcgggttcctctggagagaagggggaaaagggtggtcttggt
gctcaaggcccaccgggtgttcctggtcctggtgggtccccaggacgggatggtacacaa
ggccagaggggactgcctggcaaagatggaccccaaggacaaattggtccaccagggcca
attggaagcccaggagtgcccggagccataggtcagagtggacccacaggacacctgggt
gaacagggaccccctggccccattggtacaaaaggagacaagggtgaaagaggtgatatg
caagcccaggctgtggtccgttccatcgctagacaagtttgtgaacagctaattcaaagt
cacatggccaggtatgactcggtcctgaaccagatccccagccagtctgtgtcggtgcgt
gcggtgcctggaccccctggagagccaggtcgcctgggacctcggggccctgcaggagag
caaggactgccaggcagaccaggattcccaggaaacaacggcgaaccaggcagacctggg
gagagaggtttatcaggagacaagggagagaaaggaagcccaggcatcggtactctggga
cccagaggaccacagggaccaccaggacctccaggtgaaggccgaccaggcagcccaggg
cagccaggaagaccaggcaaccaaggaacacctggacgcccaggcaatcccggctccaca
ggccaggctggcccccagggatactgtgatgcctcatcctgtatgggttacaatgtcgga
ggtggatatggtaacccaagcgatcgagttgtacagttacctcccagctacccccaaaca
catgactcttacgaggaggaggaggaggaggaggacccatacgcagggtatacttcctac
cctcagcaaccccaaaacccctacccagcaccccgcccagttcatcctgagacagatacc
actgaggtgaggtcaccaggaagctaccgcgtctccaggagcatcgcaaaaaggaaggcc
aagtcaaccaacatgactctttaa
DBGET
integrated database retrieval system
