KEGG   Polyodon spathula (Mississippi paddlefish): 121313301
Entry
121313301         CDS       T07273                                 
Name
(RefSeq) collagen alpha-2(VI) chain-like
  KO
K06238  collagen type VI alpha
Organism
pspa  Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04510  Focal adhesion
pspa04512  ECM-receptor interaction
pspa04518  Integrin signaling
pspa04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:pspa00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    121313301
   04518 Integrin signaling
    121313301
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    121313301
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    121313301
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pspa04147]
    121313301
   00536 Glycosaminoglycan binding proteins [BR:pspa00536]
    121313301
Exosome [BR:pspa04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   121313301
Glycosaminoglycan binding proteins [BR:pspa00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   121313301
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   121313301
SSDB
Motif
Pfam: VWA Collagen VWA_2 STALD
Other DBs
NCBI-GeneID: 121313301
NCBI-ProteinID: XP_041101624
LinkDB
Position
3:complement(63590279..63609443)
AA seq 1014 aa
MGVLFKVILLFWILRMSASDPEAEALLIRPKGLLGKDDCPINVYFTVDTSESVALKEYPW
GSQVEELKIFLRMFVQKLQATKLQAKQVEWSYGGLHFSDQVEIFSEITSDVSTFLARVSA
INYIGRGTFIDCALRNMTEQVRLTPSGKPRLQFAVILTDGHITGSPCGGVQVAAEAARAA
GIKIFVVATHFDTMESELKQIASSPVELYRKDYLAYPSGHRQSAVNRITDLMVKEGEHEC
EEQRCLETSGIPGPKGLMGIKGSKGSTGPAGDLGAPGQRGDPGIEGPIGFPGQKGYSGLK
GEKGDIGAPGLKGEPGTPGYSGIDGMMGKPGTVGTPGCKGETGMQGGMGPPGDFGIRGEA
GDPGVKGYAGQPGRSGPQGAIGDSGEKGVYGYIGNPGLPGQKGTKGKTGTTGDPGDPGTR
GEIGIVGQRGKTGSKGEKGDLGPEGERGLPGRTGEKGVIGSPGFQGVRGTPGESGTTGKR
GNAGEAGDFGPRGDLGSPGAKGDKGKDGYNYAGARGIQGDRGDSGSRGLQGTQGYYGDKG
ALGTKGIKGERGDPGPEGIPGERGQRGQPGSQGSPGTRGASGITDCDIMGYVRETCGCCD
CEKVCQSLDLVFVIDSSESIGKTNFSLAKNFVINVANRLGTMAKNISDVSGSRLGVVQYS
HQGAVQAIRMDDESITSVTSFKAKVKAMEWIAGGTWTPSALKFTYEQLIVPGRRLGTKVV
ALVITDGRYDPKDLDNLESLCQGVEVYAIAIGDMFDGKAERASLEKIACNIGDRVKTLSV
YAELTAEEFLEVIEQILCPEPETICPNVNCAPELKVAPLVQRPVDILFFVDGSERTGEEN
FRTVLRFINQIAQEIRLAQKDNDYKGARIAVLQYGSEAEQDLLLDFSYDAAIIHSFISKA
VYRDSSSHLGGALLYAVDNLINNRASRFRGVRKNAETSFVFLTDGVTSDKNFDDGIMSMR
KANVVSTAFAVGSDVDHDRLLQLVFNDKASVFHFKKYSDLISTRVVRHIAHCLG
NT seq 3045 nt   +upstreamnt  +downstreamnt
atgggtgtacttttcaaggtcatcctgcttttctggatattgcgaatgtctgcatcagac
cctgaagctgaggccctcctgataagacccaagggtctcctggggaaagatgactgccca
atcaatgtctatttcactgtggacacttcagaaagcgtggcgttgaaagagtacccttgg
ggcagccaagtggaggaactaaaaatcttccttcgaatgtttgtccaaaaactccaggcc
accaaactgcaggccaagcaagtggagtggtcttacggaggccttcacttttctgaccaa
gtggaaatcttcagcgagataaccagtgatgtttccacattccttgccagagtcagtgct
attaactatattggccgggggacgtttattgactgcgctttgaggaacatgaccgagcaa
gtcaggctcacgccatcagggaagccccgtctgcagtttgctgtcattctgacggacggt
cacattacaggaagtccctgtggaggggtccaggtggcagcagaagctgcaagagctgcc
gggatcaaaatcttcgtcgttgcaacacactttgataccatggagagtgaattgaaacaa
attgcgagttctcctgtcgaattgtatcgcaaggactacttagcatacccaagcggccac
agacaatctgcagtcaacagaatcactgacctaatggttaaagaaggagaacatgagtgt
gaagaacaaaggtgcttagagacttcaggaataccaggacccaaaggacttatgggtata
aaggggtcaaaaggaagtacaggcccagctggtgacctgggggctcctggacaaagggga
gatcctggaattgaaggtccaattggttttcctggccaaaaggggtattctggtcttaaa
ggagaaaaaggtgatattggtgcgccaggtttaaagggtgaacctggaacacctgggtac
agtggaattgatggtatgatgggaaaacctggcactgttggcacacccggttgtaaaggg
gagactggcatgcagggaggaatgggtccccctggtgactttggcatcagaggtgaggcc
ggagatccaggggtaaagggttatgctggacagcctggaagatcagggccccaaggagcc
ataggtgacagtggtgaaaagggtgtgtatggctacattggaaatcctgggcttcccgga
caaaaaggaacaaaggggaaaacaggaactacaggagatccaggtgaccctggtacaagg
ggggaaatcggaatagttggacaacgaggcaaaactggcagcaaaggagaaaagggggac
ctcggacctgagggggaaagaggattgcctggaagaactggagaaaaaggagtcattggg
tcccctggtttccaaggtgttaggggtactcctggagagagtggcactacaggaaagcgt
ggaaatgcgggggaagcaggtgattttgggccaagaggagatcttgggtccccaggagct
aagggtgacaaaggcaaagatggatacaactatgcaggtgccagaggcatacagggagac
agaggggactctgggtctcggggactgcaggggactcaaggatattatggggacaaaggg
gcactgggaactaaaggcatcaaaggagaaagaggggatccaggaccggaaggcatacca
ggtgagaggggacaaagaggacaacctggatcacaggggtctccaggaactcgtggtgcc
tctggaataactgattgtgacataatgggatatgtaagagaaacatgtggctgctgtgat
tgcgagaaagtctgccaatctctcgaccttgtgtttgtgattgacagttcggaaagcatt
ggaaaaactaacttcagccttgctaagaactttgtcataaatgtagcaaacaggctggga
acaatggcgaaaaacatttcggatgtatcaggttcccgccttggggttgtgcagtacagc
catcaaggagctgtgcaagccattcgaatggatgacgaaagcattacctcagtaacttcc
tttaaggccaaagtaaaagctatggaatggatagctggtggaacatggacaccatcggct
ttgaaattcacatacgaacagttaattgtgcctggcagacggctaggcactaaagtagtg
gctctagtcattactgacgggcggtacgatccaaaagacttggacaatttggagagcctg
tgtcagggagttgaagtgtatgccatcgccattggggatatgtttgatggcaaagccgag
agagcgtccttggagaagatagcttgtaatatcggtgacagagtgaaaactctcagtgtt
tatgctgaactgactgcagaggaattcctggaggtgattgaacaaatcctttgcccagaa
cccgagaccatctgcccaaacgtgaattgtgccccagaactaaaggttgccccgcttgta
cagcgccctgtcgacattttgttctttgttgatggctcggagcgaaccggagaagaaaac
ttcaggacagttctgcgctttattaaccagatagcccaagaaatcagactggcacagaaa
gacaatgactataaaggagcaaggatcgcagtcctccaatatggaagtgaagccgagcaa
gacctgcttctcgatttctcatacgatgcagccatcattcattcttttatctcaaaggct
gtgtaccgcgactcgtcgtcccatttgggaggggcgctactatatgctgtcgataattta
ataaacaaccgtgcgtctagattccgtggagtgaggaagaacgcagaaacgtcctttgtc
tttttaaccgacggagttaccagtgacaagaacttcgatgatggaatcatgtctatgaga
aaggcaaacgttgtaagcactgcgtttgctgttggctccgatgttgatcatgaccggttg
ttgcagctggtttttaacgataaagcatcagtgtttcattttaagaagtatagcgatctg
atctcaacaagggttgttagacatattgcacattgtttaggttaa

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