Polyodon spathula (Mississippi paddlefish): 121313332
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Entry
121313332 CDS
T07273
Name
(RefSeq) RNA polymerase II subunit A C-terminal domain phosphatase-like isoform X1
KO
K15732
RNA polymerase II subunit A C-terminal domain phosphatase [EC:
3.1.3.16
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pspa01009
]
121313332
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121313332
Enzymes [BR:
pspa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
121313332
Protein phosphatases and associated proteins [BR:
pspa01009
]
HAD phosphatases
Fcp/Scp phosphatases
121313332
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
121313332
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FCP1_C
BSH_Fcp1
NIF
Biotin_lipoyl
PTCB-BRCT
BRCT
RTT107_BRCT_5
BSH_CusB
Motif
Other DBs
NCBI-GeneID:
121313332
NCBI-ProteinID:
XP_041101675
LinkDB
All DBs
Position
3:66579762..66723188
Genome browser
AA seq
993 aa
AA seq
DB search
MEDPADSGGGGTAASADPSVLVTEIHCSAGARPLRLLEWKVKPGSHVNIDSVLAVCIPIP
VDRQAGAEPRDPPSRQAEKKVKSDRAGVVRELCCQPGQVISPGDILVRIEECTHPVVMKG
LCAECGQDLTQLQNKNGKQQTPISTANVSMVHSVPELMVSSEQAEQLGREDQHRLYRNRK
LVLMVDLDQTLIHTTEQHCKQMSNKGIFHFQLGRGEPMLHTRLRPHCKDFLEKIAKLYEL
HVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPFSKTGNLRNLFPCGDSMVCIID
DREDVWKFAPNLITVKKYVYFQGTGDINAPPGSKEAQMRKKANNVNKPTEVSELASSAHK
ESEEVKVSAVEEHSNGLRKRVKEQNGNQNTPADDSSSKSDPSSSRDKANERIHSGGECST
VEDASRVNYSANVREYHSGSTQQDSGRTIADKPLVKSSRGSDSVANDFDLSSDSESEHDS
EAGKASSNSDSEGKNSCKRAIAVQPEHKKSKVNTVGENHSGEKQVDPEDQACDNQLDNEQ
DSLGGLGNGCREKKEAETESQNSEQSGVTMGESLDQSMEEEEEEEDLDRDDHLIYLEEVL
ARIHMEYYARYDRYLKKELPEAPDIRKIVPELKSKGLAGTIIVFSGLYPTNYPMERTREC
YHAVALGAKISKHLVLNAKDPNRTTHLIAARPGTEKVRQAQGCKHLHIVNPDWLWGCLEQ
WERVEEKLFPLKEDYIKTQRTSSPATFPDIQSTFQTPLFHPTPVHPKVQAGPEVRIYDPV
TGKLIRKGSQSSRQAPYIQSPDPPITLQVHGQQSSFRVVQPHQHLGEEELQCSSQDDEQP
GPSRRERQPSMSESMPLYTLCKEDLESMDKEVDDMLGEESDNESEGGKEEKMEEEEAGKN
PPKEQNPETLGTTVEKPKMSSSEEGNLTGSTPRGHKRKLEEAGGQDGNSSRDSSKESSNE
DEEGSSSEADEMAAALDAELNDFITCTSHGRKT
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atggaggacccggcggactctggtggcggcggcaccgcagcttctgcggacccctcggtg
ctggtgacggagatccactgctcggcgggggctcgtcccttgaggctgctggaatggaag
gtaaagcccgggtcgcatgtgaacatcgactcggtcctagcggtgtgtatccccatcccg
gtggatagacaggccggagcagagccccgggacccgccgagtcggcaggctgagaagaag
gtgaagtctgaccgggccggagttgtgagagagctgtgctgtcagcctggacaggtcatc
tctccgggggatatattagtacgaattgaagaatgtacccatccagttgtcatgaaaggc
ctctgtgcagaatgtggccaggatctcacacaattgcaaaacaaaaatggaaaacagcaa
acccccatatccacagccaacgtgtccatggtccacagtgtcccggagctgatggtcagc
tcagagcaagctgagcagttggggagagaagaccaacaccgactatacagaaacaggaaa
cttgtgctgatggtagatttggaccagacgttgatccatactactgagcaacactgcaag
caaatgtccaacaagggaatcttccactttcagcttggccggggagagccgatgctgcac
acccggttacgtccccactgcaaagatttccttgagaagatcgccaaactgtacgagttg
cacgtttttacctttggtagcaggctgtatgcacacaccatagcaggatttttagatcct
gaaaagaagctcttctcacatcgaattctgtcaagggatgaatgtattgatcctttctct
aaaacgggaaacctcagaaatctctttccatgtggcgactcaatggtttgtatcattgat
gacagagaagatgtgtggaagtttgcacctaacctcataacagtaaagaaatacgtctat
tttcaagggacgggggatatcaatgcaccacctggatctaaggaagctcagatgaggaag
aaagcaaacaatgtgaataagcctactgaggtatcagagctagcatcatctgcccataag
gagtcggaggaagtaaaggtctctgctgtggaggagcacagcaatggcctcaggaaacgc
gtcaaggagcaaaacggcaaccagaacactcctgcagatgactcttcctcaaaaagtgac
ccttcaagttctcgggacaaagctaatgaaaggatacactcaggtggggagtgctctact
gtagaggatgcttctagggttaactattctgcaaatgtaagggaataccactccggctcc
actcagcaggacagtggcaggacgattgcagataagccgttggtcaaaagcagtcgtggc
agcgacagtgttgccaacgactttgacctgtctagtgacagcgaaagcgaacatgattca
gaggcagggaaagcctcctccaacagcgatagcgaagggaaaaatagctgtaaaagagct
attgctgtgcaaccagagcacaagaagagcaaggtcaacacggtcggggagaaccattct
ggggagaagcaggttgatcccgaggaccaggcttgtgataatcagttggacaatgagcag
gatagcctggggggcttgggtaatggatgtagagaaaaaaaagaggcagagacagagtcc
cagaacagtgagcagtctggggtgaccatgggagagtctctggaccaaagcatggaggaa
gaggaagaggaagaagatctagatagggacgaccatttgatatacctggaagaagtcctg
gcccgcatacacatggagtactatgccaggtatgaccgttacctaaagaaggagttaccc
gaggcacctgacatccgcaagattgtccctgaactgaagagcaagggtctggcagggacg
ataattgtttttagtggactgtaccccaccaattatcccatggagagaacgcgggagtgc
tatcacgcagttgcccttggagcaaagatcagcaaacacctagtacttaatgctaaagat
cccaacaggacaacacacttgatcgctgctcgacctggtactgaaaaagtgaggcaagcc
cagggctgtaaacacctgcacattgtcaacccagactggttgtgggggtgtctggagcag
tgggagagagtggaagaaaagcttttccctttgaaggaggactacatcaaaacacagaga
accagcagccctgccacatttcctgacatccaaagtacatttcagacgccgttgttccac
ccaactcccgtccacccgaaggtacaggccggcccggaggtacggatctacgaccctgta
acagggaaactgatcaggaagggctcccagagctccaggcaggctccatacatccagtcg
ccagatcccccaatcacactgcaggtgcacggacagcagtcttccttcagggtggtacag
ccccaccagcacttgggtgaggaggaacttcagtgttcgagccaggatgatgagcagcca
ggcccttcacggagggaacgacagccgagcatgtcggaatcgatgcctctgtacaccctg
tgcaaggaagatctggagagcatggacaaggaggttgatgacatgttaggggaagagagt
gataatgaaagtgaaggtgggaaggaagaaaagatggaagaggaggaagcaggaaagaat
ccgccaaaggaacaaaatcctgaaaccctcggaacgacagtagagaagcctaaaatgtca
tcgagcgaggaggggaacttgactggcagtacccccaggggccataaacgcaaattagag
gaggctgggggccaagatgggaattccagtagggattcaagcaaggagtcgagtaatgaa
gacgaagagggcagcagctccgaggcggacgaaatggctgcagcacttgacgccgaactc
aatgacttcataacttgtactagccatgggagaaagacgtaa
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