Polyodon spathula (Mississippi paddlefish): 121313348
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Entry
121313348 CDS
T07273
Name
(RefSeq) nuclear pore complex protein Nup153-like isoform X1
KO
K14296
nuclear pore complex protein Nup153
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03013
Nucleocytoplasmic transport
pspa03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121313348
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
121313348
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121313348
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121313348
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup153
Zn_ribbon_RanBP
Motif
Other DBs
NCBI-GeneID:
121313348
NCBI-ProteinID:
XP_041101699
LinkDB
All DBs
Position
3:complement(67897477..67940438)
Genome browser
AA seq
1434 aa
AA seq
DB search
MADAGGGKIRTRRYHIASKPYAKGKQQQGIIGRVTDTVKNIVPGWLQKYFKSNEPTSAEG
DVEEEADGRENHDIQIQNNQGHTEEEVLPFSDRRHTPEPSTSNAEPSTSQSALNLSILPR
PPLNRSHNFATLNSPSLHCQPSTSAAFPIGSSGFSLIKEIKDSTSQHEDDNISTTSGFSS
RASDKDVTTSKNMFVLPVWSPEADRSQSVPQQAGTSLRKPAFNLSVFGGSSTSLASTSAL
NSSQLGDSMFYPGKTTYGGAAAVRSPSSRVRGTPYQAPVRRQIKAKQIHSPCGVTSATAR
RILQSLERMSSPLADAKRIPSPSSLPLSPMLNRGELEVTHFKSKRKSDAQHPPVQKLVTP
KAASVAVNKSMFFKPSLTPTGHSSSSADRGGRQTKHVEPEISLQHPKSTSSFSYPLFSTP
AANGMDSGGAGGKMKRERGIRASSKPAQDQEEVEIPNLPHISLPVRISTLPTLNFCCPTN
TSPSVTTTPVANKVPPAASIQNRTGFTFSSPIFKATETSPLPLTPSAGFTFSAPVPKTVA
SDLSETTSTPSATPVKNSSTSSSAVGTPVNTNDEDFEGPFRPAKALKQGSVLDILKGPDF
SSSPAGSTAVPVKPFQMTSTSSPTGGFGFGDKFKPATGSWQCDACLLQNKPSDSKCVACQ
TAKPNVDSSKESKCSKTTPETLPSLGDKFKPVSGTWECDTCLVQNKPEVTKCVACETSKP
GTGVKSALSLPAFSESKLTVGSGGSGSTSITTMTSSLSSGFGFGEKFKKPEGAWDCDVCL
VQNKAEDIKCVSCQCAKPGAVAVPPSGMTAPEPSGGLLDFGDIFKKPEGSWDCDVCAVQN
KAEMMQCVACQSAKPGAKVETKGFSSSALSSATTASPFGGITGGFKFGDQGGIKFGTSST
DNAASGGITGGFKFGTTKSEDSQPDSQPIGSGFKFGAAGGIQFGTGNCSSQSENKAAEPK
GKPSLEGFCFGLSAPPKADEKTADGGFKFGAPKEKPELGGTAVAVQFSFGKQEEKKHSGE
QLPAVGFAFGKPVEEKTGTLAPSAASTFMLGKTDKPDPVSSSSKLLFGKGKESDKPAAQL
GFSFGKPETAKQEMKPVFSFGKPAEKQEAAVQPKPTFAFGVAPATADQGASKPAYNFMGS
TTASATVTAASTASCTPSTNMFGSSSTSASIVPASTFMFGQASSTGFSSGASETTTCSKS
FIFGAQESKAPIAPAAGASPFVFVTGSNTAATAAFGFGSTASAAPTTTSSTGSSASQFVF
GSASSTPASAPAFGSNQTTAFCQGSNQPSAPAFGSPAAAALFSAGSQPPAFGSQASTNQP
SVFGQQSNQPPAFGAAVAASAVPAGGFQFGAISNFGTPSSSGVFAFGGNAAGSPASAVAP
AAPAQPSGSTGGFQFSQGPGFNIGSTKTTTSTGSSQGHHQISGRKIKTAVRRRK
NT seq
4305 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcgggaggagggaaaattagaaccaggaggtaccatatcgcttccaaaccc
tacgccaaaggcaaacagcagcaaggtattattggcagagtgaccgacacagtgaagaat
atagttcctggctggttacaaaaatacttcaagagtaatgagccaacatcagcagaggga
gatgttgaggaagaagcagatggacgggagaaccatgacattcagattcaaaacaaccag
ggtcacacggaagaggaggtgctgccattttctgacagaaggcacacacctgaaccctca
accagtaatgcagagccatctacaagccagtctgcattgaatttaagtatcctgccaaga
ccaccgctcaatcgaagtcataatttcgccacactgaattccccttcacttcattgtcag
ccttccacgtccgcagcatttcccattggcagttcaggcttctccctgataaaggagatc
aaagactctacctctcagcacgaagatgacaacatctcaaccaccagtggcttctcctct
agagcatctgataaagatgtgaccacttcaaaaaacatgtttgtgctgcctgtgtggtcc
cctgaagctgatcgttctcaatcagtcccacaacaagctggaaccagcttgagaaagccg
gcttttaacctgtctgtctttggagggtcatccacatcccttgcaagcacttctgcgctg
aattctagtcagcttggagactctatgttttatcctggcaaaacaacatacggtggggca
gctgcagtgaggtccccaagttcgagagttcggggtacaccttaccaggcacctgtaaga
agacagataaaagcaaaacagattcactctccgtgtggagtaacgagtgccacagcacgg
agaattcttcagtctttagaaaggatgtccagtcctttagcagatgctaaaagaatccca
tcaccctcatcattgccattgtctccaatgctgaataggggtgaattagaagtcactcat
ttcaagtcaaaaagaaagagtgatgcacaacaccctcctgtccagaagcttgtgacacca
aaggctgcttctgtagcagtgaacaaatctatgtttttcaaaccctctttaacgccgaca
ggtcattcaagtagttcagctgacagggggggaagacaaactaagcatgttgagccagaa
atatcgctgcaacacccgaaaagcacaagcagtttttcatacccattgttcagcactcct
gcagccaatggaatggattctggaggggcaggtgggaagatgaagagggagaggggcatc
cgtgcctcctcaaaacctgcgcaggaccaagaggaagtggaaattccaaatctgccacat
atttctttgcctgtgaggatatcgactttaccgaccttgaacttttgctgtcctacaaat
acatccccctctgtgacgacgactccagtagctaataaggtaccgcctgccgcctctatt
cagaatcgcactggtttcaccttctcatcaccgatttttaaagcaactgagacgagtccg
ctacctcttacaccctctgctggatttacatttagcgcaccggttcctaaaacagttgca
tctgacctgagtgaaacaacatcaacgccttcagccacaccagttaagaactcctccaca
tcttcatctgctgttggcactccggtgaatacaaatgatgaggactttgaaggtccattc
agaccagcaaaagctttaaaacagggcagtgtgcttgacattttaaaaggacctgatttt
tcttcatctcctgctggaagcacagcagttccagtgaagcctttccagatgacttccaca
agctcaccaactggggggtttgggtttggggacaagtttaaacctgcaacgggttcctgg
caatgcgatgcttgtctcttgcaaaataaacccagtgacagcaaatgtgttgcatgtcag
actgctaaaccgaacgtagattcctcaaaagagagcaaatgcagcaaaacgacaccggaa
accttgccgagccttggggataaattcaaacctgtatcagggacttgggagtgtgacact
tgtttagtacagaacaaaccagaggttacaaaatgtgtagcctgtgagacttcaaagcct
gggactggagtaaaatctgccttgagtttgcctgccttttctgaaagcaagttgacagtg
ggttctggtggctctggctccacctccatcacaacaatgacatcttcgctgtcttctggg
ttcggctttggggaaaagttcaaaaagccagaaggagcctgggattgcgatgtatgcctt
gtacagaataaagcagaggacatcaagtgcgtctcctgtcagtgtgcaaaaccaggtgct
gttgcagtaccaccttctggcatgactgccccagaaccatctggagggctgctagacttt
ggagacatatttaagaaacctgaaggaagctgggactgtgacgtgtgtgcagtgcaaaac
aaagctgaaatgatgcaatgtgtggcatgtcaaagtgcaaagccaggagccaaggtggag
accaaaggttttagctcttcggctttgtcatcagctaccactgcatccccatttgggggg
attacggggggatttaaatttggagaccaggggggaataaaatttggaacctcatcgaca
gacaatgctgcttctggagggattacaggagggttcaagtttggtacgacaaagagtgag
gacagtcagccagattctcagcccattggtagcggttttaaatttggcgcagcaggagga
attcagttcggcactggaaactgcagcagccagtccgaaaacaaagctgccgaaccaaaa
ggaaagccatctttggaaggtttctgttttggactctctgcccctcctaaagcagatgaa
aaaacagcagatgggggatttaagtttggggcccccaaggagaagccagaactgggagga
actgcagtggctgtgcagttttcttttggcaaacaagaggagaaaaagcattctggggag
cagctaccagcagttggatttgcttttgggaaacctgtggaggaaaagactggcactctg
gccccttctgcagcctcaacattcatgcttggaaagactgataagccagaccctgtcagt
agctcctccaaattattgttcggcaaggggaaggagtcagacaagcctgcagcacagctg
ggcttctcttttggcaagcctgagactgccaagcaggagatgaaacctgtgttcagcttt
gggaaacctgctgaaaagcaagaggcagcagtgcaaccaaaaccaacatttgcatttggg
gttgcccctgctactgcagatcaaggagcgtccaagcctgcatataacttcatgggaagc
acgacagcctctgctacagttacagctgcctccacggcctcctgcaccccgtccaccaac
atgtttgggagctccagcacctctgcatccatcgtaccggcctctaccttcatgttcggt
caggccagcagcactggcttttcaagcggtgcttctgaaaccaccacctgctccaaaagc
ttcatttttggtgcgcaggaaagcaaagcacctatagcacctgctgctggagcctcaccc
tttgtgtttgtgacaggaagtaacactgcagctacagcagcttttggttttgggtcaact
gcgtcagctgcacctacaacgacaagttctacaggctcttctgcttctcagtttgtattt
gggtcagcctcttcaacaccagccagtgcccctgcatttggttccaaccagaccactgca
ttctgccagggatccaaccaacccagtgccccagcctttggctcccctgctgctgctgct
ctcttctctgctggatcccagccacctgcctttgggtcccaggccagcaccaaccagcca
tcggtgtttggacagcagagtaatcagccacctgcctttggcgctgcagtagctgcttct
gctgtcccggctggagggttccagtttggggcaattagtaactttgggactcccagcagc
agtggggtctttgcttttggtggcaatgctgcaggatctccagcctctgcagttgcccca
gctgcacctgcccagccctctggctccacaggaggcttccagttctcccagggcccaggt
tttaacattggttctacaaagactactactagtactggatcttcccaaggacaccaccag
atttctggccgaaagattaagactgcagttcgacgcaggaaatag
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