Polyodon spathula (Mississippi paddlefish): 121313437
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Entry
121313437 CDS
T07273
Name
(RefSeq) transcription factor Sox-17-alpha-A-like
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
121313437
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121313437
Transcription factors [BR:
pspa03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
121313437
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
HMG_WDHD1
HTH_24
RhgB_N
Motif
Other DBs
NCBI-GeneID:
121313437
NCBI-ProteinID:
XP_041101900
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All DBs
Position
3:78199570..78201686
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AA seq
393 aa
AA seq
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MSSPDAGYASDDQTQGRCSMSLMMPGIGHCQWTDPLSPLGEEKIKSEACSASSGNQNRGK
TEPRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALPVTEKRPFVEEAER
LRVQHMQDHPNYKYRPRRRKQVKRIKRLESGFLVHRVTEQQASALGNDDRVCVDNLNVAY
HEHHFPVQSHFSQLSHYRESQSMGGHLDSYSLPTPDTSPLDVVANDSVFFPSQAQEDYHM
MPYSYHHQPAEYLSQEHHSNPVLRRPLPPTEHMGQVSSLQGLMGCHGSLAMYYSQLCAPT
NPKLQQRSDSGQLSPPPESHQVDNVEHMHQSDLLGDVDRNEFEQYLNSAARSDMTGLSYN
GHEANMPPTDNSQISSVLSDASTTVYYCNYNSA
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtcctgacgctgggtatgcaagtgacgatcagacccagggaaggtgttcgatg
tcactcatgatgcctggaattggacactgtcagtggacggatcccttaagtcctctcggg
gaagagaaaatcaaaagtgaagcctgctctgccagctctggaaaccagaacagaggcaag
accgaacctcggatacggcgacccatgaatgcgtttatggtctgggcaaaagatgaacgt
aagcgtctggcacaacaaaacccagatctgcacaatgcagaactcagcaaaatgcttggt
aagtcttggaaagcattgcctgtgactgaaaagcgcccatttgtggaagaggcagagaga
ctcagagtgcagcacatgcaagaccaccccaactacaaatacagaccacggaggagaaag
caggtgaaaagaatcaagagactggaatctggctttctggtgcacagagtgactgaacag
caggcttcagctctagggaacgatgacagggtctgtgtagacaaccttaatgttgcttac
catgagcaccatttcccagtccagagtcatttctctcaacttagccattaccgggaatcg
caaagcatgggggggcatttagactcttacagtttacccacccctgatacatcgcctctg
gatgtagtggcgaacgattctgtatttttcccatcgcaggcccaagaagattaccacatg
atgccttacagttaccaccaccaacctgcagagtatctctctcaggaacaccattccaat
cctgtgctacgcaggcctcttccccctacagagcacatgggtcaagtcagctctttacag
ggtttaatgggatgtcatggctctctggcaatgtattacagtcagctgtgtgcacccacc
aacccgaaacttcaacagagatccgattctggacagctctcgcctccacctgaatcccat
caggtggacaatgtggaacacatgcaccagtcagatcttttgggagacgtggatcgcaat
gaatttgagcagtacctgaactctgcagctcgctcagatatgacagggctttcttataat
ggacatgaagcaaatatgcccccgactgacaatagtcaaatttcttcagttctctccgat
gcaagtacgactgtatattactgtaattacaacagtgcataa
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