Polyodon spathula (Mississippi paddlefish): 121313453
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Entry
121313453 CDS
T07273
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 7-like isoform X1
KO
K14437
chromodomain-helicase-DNA-binding protein 7 [EC:5.6.2.-]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pspa03036
]
121313453
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
121313453
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HTH_CHD1_Hrp3
Chromo_MIT1
HDA2-3
Motif
Other DBs
NCBI-GeneID:
121313453
NCBI-ProteinID:
XP_041101920
LinkDB
All DBs
Position
3:79399019..79466517
Genome browser
AA seq
3037 aa
AA seq
DB search
MADPGMMSLFGDDGNLFSEGLEGLGECSFPESQVNTLGPPMPIDQGYGSLPSSLHHLPQP
SPGQGQPKLSHFDHFGQYEQQKMHLMEQQGGRMLSNAPGNGMSSPHSQYHNPPPPVSHGG
GGQMGVYPGLQGERHGQPFVDSGSLWGPRAVQVPEQVRAPFQQQSPQQSAPSGHVQQMGA
YMARGDYSMQPHSQTPTPPRINQFSQGPQQEGGRGPQANHFLGHMSPQQNPNLVGPPMRH
PVQQQQPQQFHHRPTQVNLHPESVAHTPRFSPSPSQQQAVVAGRPQQSLSFSSRNQAVQS
PTVNNSGQYSPYSSYSNLNQGLVNSTGMSPNIGLTSNNTPMTQGRYPNTAGFPPGTSQGL
MHPQSIQANQINSQPMHPSQQPQPAQQQQPQGSYGSPPPMSPMKALCNPAGTPPPQQVRP
GSAGMVIEVGGYPSMPHQPPGAIGLAQRNIGPRGLQQQPPPPQPYMGLSPSQRDMTGGLR
PPGGIGGNHTEPPGIQELRLLVGPPPQHPGQPLPPPLPFQKQQLPTCTSMQQQPHLIMHH
QNSPPLQSHHQPWAQQHKSTPTPQKVPVQQPSPSDPSVEMPASDMTQVSSQNSQLVNCEE
QQTDLEQKQQKKKKKKASRASTGEITKGTGEETPQEGLDPLKSPETDGSPAEKKKKKKPK
EKKEPKEPKEPKQPKTPKTPKTPKAPKEPKEKKVKVTTPKPKSTKKASNKPDPEASTTKK
KEGKRKRESLDNSDLERTPPPSPEEEEDDMGIQKRRSSRQVKRKRYTEEFKISDDEVEDV
DDATGRKSPSNTSQSEPQEVPDDGPVVEKIMSVRMGKKLMESGEEVEVEEFYVKFKHFSY
LHCRWADLEELEKDKRIHQKIKRFRAKQTLKFLSEMEDEHFNPDYVEVDRILDVSQSTDD
NEETVSHYLVKWCSLPYEDSTWELKQDIDQAKIEEFEKRMATEPKQTRVERPPANDWQKS
ESSREYKNGNVLREYQLEGVNWLLFNWYNTRNCILADEMGLGKTIQSITFLHEIFLKGIH
SPFLIIAPLSTIPNWEREFHTWTELNVIVYHGSQASRQMIQTYEMNFRDSQGRVIKGAYK
FHAVITTFEMILTDCPELRNIQWRCVVIDEAHRLKNRNCKLLEGLKMMDMEHKVLLTGTP
LQNTVEELFSLLNFLEPERFPSETTFMQEFGDLKTEEQVQKLQAILKPMMLRRLKEDVEK
NLAPKEETIIEVELTNIQKKYYRAILEKNFAFLSKGGPGGGGSGGSGNANIPNLLNTMME
LRKCCNHPYLIKGAEEKILDEFRETHHFDYPDFHLQAMVQAAGKLVLIDKLLPKLKAGGH
RVLVFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTR
AGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQRKAVKIYRLITRNSYEREMFDK
ASLKLGLDKAVLQSMSGRENSANGMQQLSKKEIEDLLRKGAYGALMDEEDEGSKFCEEDI
DQILKRRTQTITIESEGKGSTFAKASFVAAGNRTDISLEDPDFWQKWAKKAELDMEAIHG
RNNLVIDTPRIRKQTRHFSSIKEEDMMEFSELESDSEEKPSLKPRRPQDKSQGYPRSECF
RVEKNLLVYGWGRWIDILSHGRFKRQLTEQDVETICRAVLVYCLNHYKGDENIKSFIWDL
ITPTEDGQTRALQNHSGLSAPVPRGRKGKKVKTQSAQPVLQKAGWLANCNPDSLFQEDSY
KKHLKHHCNKVLLRVRMLYYLMQEVIGDQADSILEGTDSSEIDIWIPQPFHAELPADWWD
KEADKSLLIGVFKHGYEKYNSMRADPALSFLERVGMPDAKAIAAEQRGADMMADGADGGD
FDREDEDPEYKPARMPFKDELDEFANSPLDDKEESMDAENAGKSGENAEFGKLYWPSASA
LTTRLRRLITAYQRSYKREQMRQEAMTKTDRRRRRPREEVRALEAEREAIITERRQKWTR
REEADFYRVVSTFGVMYDANKQQFDWNQFRAFARLDKKTDDSLEKYFYSFVAMCRRVCRM
ALKSDEEPPDPTIIIEPITEERASRTLYRIELMRKIREQVLPHPELEERLKLCQVSLDLP
EWWESGRHDKDLLIGACKHGVSRTDYHILNDPELSFLEAHKNFAQNKSSSQFSGTPLLSQ
TPLLAPSTPVSQSKKDDQTIKPEGAEVLELDENKTEVGFPKAKEEEEKGGEEKASNSEGV
FAEDSKSAPERMTFETETTPEGPEVLAELGPKSISEKGSEEDEDKMDDDKSEESSQAEAG
VASQGKNFDEESNASLSTARDETRDGFYAEDGETSMAQIQERSYSFSFWPKDRVMINRLD
NVCETVVKGKWPVNRRQLFDFPGLLPGYTPLAVDSPLQRRSFAELSMVGQASYSGSEDIA
QSPQISKQEDALSMPVPRQRRRRRRKIEIEAERAVKRRNLMEMVAQLRESHVASDSHDKA
VDLSQAFREATGSTSNLSAVASKFLLPNASTPTPDAFKTQLELLQAGFSGTPTRHLMNGS
MRDGDLPMKRRRGRRKNVEGLDLLFLANKRASLSAEDVVVTKAFEERVQTPPQPLRNIPS
PGQLDPNTHIPVINLEDGTRLVGEDAPQNKDLVEWLKQHPTYTVDMPSYLPKNEDLLLSP
FQKPKQKRHRCRNPNKIDINTLTGEERVPVVNRRNGKKMGGAMAPPMKDLPRWLEENPEF
VIAPDWTDIVKQSGFLPESMFDRLLTGPVMREEGTGRRGRRPKSEIAKAAAHAAAAAAAT
ASSSGINPLLMNSLFAGMDLTSFQNLQNLQNLQLAGLMGFPPGLATASVGGAGDAKHAAA
MLPLMLPGMAGLPNMFGLGGLFNNNLAAAAVAASSTASTAGQGETEDGTSKIEEKKDEDR
EESEKSRQVSSETNSDSSANAASVAAAAATAAAAAMSTNPLAFNPFLLSTMAPGLFYPSM
FLPPSLGGLSLHGFSQATLAGLQNAMGGSGRSEDKETDTDVNHGTKEEDGVNALEDSDTD
ESQNKTVDSSVLEDELGPGEELDSFDGAEEVEEDVND
NT seq
9114 nt
NT seq
+upstream
nt +downstream
nt
atggctgaccctgggatgatgagcttgtttggggatgatgggaatctcttcagtgaaggg
ttggagggccttggtgagtgcagctttccagaaagccaggtcaacacactgggaccgccg
atgcccattgaccagggctatgggtctctaccgtcgtccctccaccacctgccacagccc
tcacctggccaaggccagcccaaactgagccactttgaccactttggtcagtatgagcag
cagaagatgcacttgatggagcagcaaggaggtcgaatgctgtcaaacgctcctggcaat
gggatgtcctctcctcattcgcagtaccacaaccctcccccaccagtctctcatggaggt
gggggtcagatgggtgtctaccctggccttcagggagagaggcatggccagccctttgta
gacagtggttctctttgggggcccagggctgttcaggtccctgaacaggtcagagcccct
tttcagcagcaatcgcctcagcagtcagccccttctggtcatgttcaacaaatgggtgct
tacatggcccgtggggattactccatgcagccacacagccagacacccactcctcccagg
atcaaccaattctcccagggcccgcagcaggagggaggcagaggacctcaggccaatcac
ttcttgggccacatgtccccacagcaaaaccctaacctcgttggcccgcctatgcggcat
ccagtacaacagcagcaaccgcagcagttccaccaccgcccaactcaggtcaaccttcac
ccagaatctgtggcccatacccctcgcttctcacctagcccctcacaacagcaggctgta
gtagcagggagaccccagcaaagcctgagcttcagttcacggaaccaggcagtccagtcc
cccactgtaaacaactcagggcagtattctccttactcttcgtatagcaacctcaatcag
ggattagtgaacagtacagggatgagtcccaacattggccttaccagcaacaacaccccc
atgacccaggggcgctaccccaatactgctggtttcccaccaggcacctcccaggggctc
atgcacccacagtcaattcaagccaaccaaatcaattcccagcctatgcacccctcccaa
cagccgcagccagctcaacagcagcaacctcagggatcctatggttctccccctcccatg
tcccccatgaaggccttgtgcaaccctgcaggaacgcctcccccacaacaggtcagaccg
gggagtgcaggcatggtgattgaggtaggcggttaccccagcatgcctcaccagcctccg
ggagcaatagggctggctcagaggaacattggccccagaggcctgcagcagcagccacct
ccccctcagccctacatgggcttgtcgcccagccagagagacatgactggggggctgcgg
cctcctggagggattggggggaaccatactgagccgccggggatccaggaactgcgtctg
ctcgttggaccacccccgcagcatccaggacaaccactgccgccaccactgccttttcag
aagcaacagctgccaacatgcacatccatgcagcagcagccgcacctgataatgcaccac
cagaactctcctcccctgcagtctcaccaccagccgtgggcacagcagcacaagtcaaca
cctacgcctcagaaagtgcctgttcaacagccttctccatcagatccatcagtcgagatg
ccagcatcagacatgacgcaggtttccagccagaactctcagctggtgaactgtgaagag
cagcagacggatctggagcagaagcagcagaagaaaaagaagaaaaaagccagtcgtgcc
agcactggggaaatcactaaaggcactggagaggagactcctcaggaagggctagaccct
ctgaagagcccagagacagatggctctccagcagagaagaaaaaaaaaaagaagccaaag
gagaagaaagagccgaaggaacctaaagagcctaagcaacccaagactcctaaaactcct
aaaactcccaaagcaccaaaagaacccaaggagaagaaagtcaaagtgaccaccccgaaa
cccaagagcaccaagaaagccagcaacaaacccgatccagaggcaagcactacaaagaaa
aaggaaggaaaacgtaagcgggaatccttagataattcagacttggaaagaacaccccct
ccttcaccagaggaggaggaggatgatatgggcattcagaagaggcgttccagcaggcag
gttaaaagaaagcgatacacagaagagttcaaaatatctgatgatgaagtggaggatgtg
gatgatgctacaggaaggaaatctccatcaaacacttcacagtcagagccacaggaggtt
cctgatgatggtcctgtggtggaaaaaataatgagtgtgcgcatgggaaagaaactgatg
gagtctggggaagaggtggaagtcgaggaattttacgtcaaatttaaacatttctcctac
cttcattgtcgatgggctgatttggaagagctggagaaagacaaaagaatccatcagaag
atcaaaagattcagagctaagcagaccctcaagttcctcagtgagatggaagatgagcat
ttcaatccggactatgtagaagtggatagaatactggatgtatctcaaagcactgatgat
aatgaagagactgtctctcactatttggtgaagtggtgttcacttccttatgaagacagc
acttgggaactgaagcaagacattgaccaggctaagattgaggaatttgagaaacggatg
gccacagaacctaaacagacacgtgtggagcgacctcctgctaatgactggcagaaatcc
gagagttccagggaatataaaaatggtaacgtactcagggaataccagctggaaggagtc
aactggctgctcttcaattggtacaacacacgtaactgcattttggcagatgaaatgggt
ttgggaaaaacaatccagtccatcacatttctacatgagatatttctgaagggaattcac
agccctttcctgattattgcaccgctgtccaccattcctaactgggagagggaatttcat
acgtggacagaattgaatgtgatagtctaccatggcagccaagctagcagacagatgata
caaacttatgaaatgaacttcagggattcacagggtcgtgtgataaagggagcctacaaa
ttccatgctgtcatcaccacttttgaaatgatactgactgactgcccagaactgcggaac
attcagtggcgctgtgtcgtcattgatgaggctcacagattaaagaacaggaattgcaag
ctgctagaggggctgaaaatgatggacatggagcacaaggttttgctgactgggactcct
ttacagaacactgtggaagagctcttcagcctgctgaatttcttagagcctgaacgattc
ccttcagaaaccactttcatgcaagagtttggagatttgaaaactgaggagcaggtgcaa
aaactccaggctattttaaaaccaatgatgttgagacgcctaaaggaggacgtggagaag
aacttggcaccaaaggaagaaacaatcatagaggtggagctgactaacattcagaagaaa
tactaccgtgccattctggagaagaattttgccttcctttcaaaagggggacctggtggt
ggtggtagcggtggtagtgggaatgctaacatacctaaccttttaaacactatgatggaa
cttaggaagtgctgtaaccacccttaccttattaaaggtgctgaagagaaaattctggat
gagttcagggagactcatcatttcgactatccagattttcacctgcaggcaatggtccag
gctgctggaaagctagtattgattgacaaactgttgccaaaattgaaggccggtggccac
agggtgcttgtcttctcccagatggtgcgctgcctggacattttggaggactacctcatt
cagagaaggtacccgtatgagcgcattgacggtcgggtgaggggtaaccttcgacaggca
gctatagacaggttttccaaaccagattctgacagatttgtcttcctgttgtgtacaaga
gcaggaggtttgggtattaacttaactgctgcagatacctgcattatctttgattcagac
tggaatcctcaaaacgacttgcaggctcaggcacgatgccacagaatcggacagaggaaa
gctgtaaagatatatcgtttgataaccaggaattcctatgaaagggaaatgtttgacaag
gccagtttaaaactgggtctggataaagctgtactccagtccatgagtgggagagagaat
tctgctaatgggatgcaacagctttcgaaaaaggagatagaagatcttcttcgcaaagga
gcctatggtgccttgatggatgaggaggatgaaggatccaaattctgtgaagaagacatt
gatcagatcctgaagaggcgaacacagaccattactatagagtctgagggaaaaggatcc
acttttgcaaaggccagctttgtagcagctggaaaccgaacagatatttctttagaagat
cctgacttctggcaaaaatgggccaaaaaggcagagttggatatggaagcaatacatgga
aggaacaacctggtgatagatacacccagaatcagaaaacaaaccagacactttagttcg
atcaaggaggaggatatgatggaattttcagaactggagagcgactctgaggaaaagccc
agtttgaaaccacgtcgacctcaggacaaatcccagggttacccgaggagtgagtgtttc
agggtagagaagaacctgcttgtatatggctggggaagatggattgacatcctgtctcat
gggcggtttaaacggcagttgactgagcaagatgtagaaaccatctgccgtgctgtcctt
gtgtactgccttaatcattacaagggagatgaaaacatcaaaagcttcatttgggacctg
atcacccctactgaagatgggcagaccagagcactccagaaccactcaggactgtctgct
ccagtgcccagaggccgcaaaggaaagaaggttaaaacccaatccgctcaacctgtccta
cagaaggcaggttggctggcaaactgtaatcctgactcgctcttccaggaggatagttac
aagaagcacctgaaacaccactgtaacaaagtcctgctgcgagtccgcatgctgtactat
ctcatgcaagaagttatcggtgaccaagcagacagtatcttagagggcacagattcaagt
gaaatagacatttggattcctcagccgttccatgctgaactgcctgctgattggtgggat
aaagaagcggataaatctctcctcattggagtctttaagcatgggtatgaaaagtacaac
tctatgcgggccgacccagcgctctcttttttggagagagttgggatgcctgatgccaag
gcaatcgctgcagaacagagaggagccgacatgatggccgatggtgctgatgggggagac
tttgaccgagaagacgaggatccagagtacaagccagccagaatgccctttaaggatgaa
ctggatgagtttgcaaattctcctttggatgataaagaggaaagcatggatgctgaaaat
gcaggaaaatcaggtgaaaatgctgaatttggtaaattgtactggcccagtgcttcagcc
ctgacaactagactgagacgcctcatcacagcttatcagcggagctacaagagggagcag
atgagacaggaagccatgactaagactgaccggcggagacgtcgccccagggaggaagtg
agagccttggaagcggagagagaagccattataacagagaggcgtcaaaagtggaccagg
agagaggaagcggatttctatcgtgtggtgtcaacatttggtgttatgtatgatgccaac
aagcagcagtttgactggaaccagttccgagcctttgctcgactggataagaagaccgat
gacagtttggagaagtacttctactcctttgtggctatgtgcagaagggtgtgtcgtatg
gccctgaaatcggatgaagagccaccagatcccacaattatcattgagcctatcacagag
gagcgtgcctccaggactctgtaccgcattgagctcatgagaaagatccgagagcaggtc
cttccccacccggagctggaagagcgtctcaagttgtgccaggtcagcctcgaccttccc
gagtggtgggagagtggccgccacgacaaggacttgctgattggtgcctgcaagcatgga
gtaagcagaacagactaccatatcctgaatgaccctgagctttccttcctggaggcccac
aaaaactttgctcagaacaaaagcagtagccagtttagcggcactcccctactcagccag
acccctttgctggctccatctacaccagtttcccagagcaaaaaagatgaccagaccata
aagccagagggggctgaggtgctggaactggatgagaacaaaactgaagtaggatttcca
aaggcaaaggaggaagaggagaagggaggtgaagaaaaagcaagtaatagtgagggtgtg
tttgctgaagattcaaaatctgctccagagagaatgacttttgaaacagagaccaccccg
gagggcccagaagtacttgcagagttggggccaaaatcgatctctgagaagggctctgag
gaagatgaggataagatggatgatgataaatctgaggaatcctcccaagctgaagctggt
gtggcttcccagggtaagaactttgatgaagagagcaatgcatcccttagcacagctcgc
gatgagactcgagatggtttctacgcagaggatggggaaacttcaatggctcaaattcaa
gaaagatcttactccttttccttctggcctaaggaccgggtaatgatcaatcggttggat
aatgtctgtgagacagtggtgaaggggaagtggcctgttaacaggcgtcagctgtttgac
ttcccaggcctgctccctggctacactcccttggctgtggacagccctttgcagaggagg
agctttgctgagctctccatggtgggccaggccagttacagtggcagtgaggacattgca
cagtctccacagatttcaaagcaggaagatgcactgagcatgccagttccccggcagcgc
aggcggcgaaggaggaagattgaaatcgaggccgagcgggctgtcaaaaggaggaatctg
atggagatggtggcccagctacgagagtcccacgtggcctcagacagccatgacaaagct
gtggacttatcacaggcattccgtgaggcaactggttctacctcaaatctgtctgctgtt
gcttccaagtttctgttgcccaatgcctccacccctactcctgatgcctttaaaactcaa
ttggagttgctgcaagccggcttttcaggcacacccaccagacacctgatgaatggctcc
atgcgggacggggacctaccaatgaagaggaggagaggccggagaaaaaatgttgagggt
cttgatctacttttcctggccaacaagagggcatcattaagtgctgaggatgtagtagtg
accaaagcttttgaggaaagagtgcagaccccaccacaaccactgagaaacattccatcc
cctggccaattggacccaaatactcatataccagtcattaacttggaagatgggaccagg
ctggtgggagaagatgctccccaaaacaaggacttggtagaatggctaaagcagcatccc
acttacactgttgacatgccgagttatttaccaaagaatgaagatctacttctgtctccg
tttcaaaagccgaagcagaagagacatcggtgtcgaaaccccaataagatagatattaac
accctgactggagaggagagggtgcctgtagtaaaccgcaggaatggaaaaaagatgggt
ggagccatggcacctccaatgaaggacctgccaagatggcttgaagaaaatccagaattt
gtaattgctcctgactggacagatatcgtaaagcagtcgggcttccttccagagtccatg
tttgaccgcctccttactggacctgtgatgcgagaggaaggaacaggtcgccgaggaagg
cggccaaagagtgaaattgccaaggcagcagcacatgctgctgcggctgcagctgccaca
gcctcctcttctggcatcaaccccctgctgatgaacagtctgtttgcagggatggacctc
accagttttcagaaccttcaaaacctgcagaacctgcagctggctggtctcatgggattc
ccacctggcctggccacagcctctgtgggaggggcaggtgatgctaagcatgcagctgcc
atgctcccattgatgctacctggcatggcagggctacccaacatgtttggactgggtggt
ctcttcaacaacaacctggctgctgcagcagtagctgcttccagcactgcctccactgca
gggcagggggagaccgaggacgggacatctaagattgaagagaagaaggatgaagaccgt
gaagaatctgaaaaatcacgtcaggtctctagtgaaacaaacagcgacagctctgctaat
gcagctagtgttgctgcggcagcagccaccgctgcagctgctgcgatgtccaccaaccct
ctagcctttaacccattcctgctgtccaccatggcccctggtctcttctacccctcaatg
tttcttccccccagcttgggagggctctccctccatgggttctcacaggccacactggct
ggactgcagaatgctatgggcggcagtggtagaagcgaggataaagaaacagacacagat
gtcaatcatggtaccaaggaggaagatggggtaaatgccctggaagacagtgacactgat
gagagccagaacaaaactgtggattcctcggtgctggaggatgagctgggccccggcgag
gagctggattcgtttgacggtgcagaggaggtggaagaggatgtaaacgattaa
DBGET
integrated database retrieval system
