Polyodon spathula (Mississippi paddlefish): 121313492
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Entry
121313492 CDS
T07273
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121313492
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121313492
03036 Chromosome and associated proteins [BR:
pspa03036
]
121313492
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
121313492
Coactivators
SAGA/TFTC/STAGA complex
121313492
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
121313492
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
121313492
NCBI-ProteinID:
XP_041102036
LinkDB
All DBs
Position
3:complement(81980056..82048645)
Genome browser
AA seq
815 aa
AA seq
DB search
MQPESWNKSQSVNGGNVSVNGVSCQSSAVFVTNGVTGHVHTNSAALTTATTCPSDVKAVS
NGQTSLIPAATMSDSAPNNQTFTLSSCKPQTVMTVPKSPGSIMQKSVVISSSLNSEITTN
ILNTSTHMPASLDSTVPKIVVHTSKPGASAHVIIGSKPVQESTTMTSANSHSSVVSHCQP
LQTVNLSGQTSMGKSLAPAPQTGMAATTSVESTSKVTRVAAIAQTPGKGTVLVVPRVSTP
QQNGTPQALQTTTIQLPANFQIPQGMVLVRSDRGQLMLVSQQALAQAQAQGAGLPRHAAT
MPTVQASTLQTTGIAVSATSVKTVRPPAPAPTTAEGSKGKSVAQSTVTAETVDNAKKCKN
FLVTLIKLASSGTHSAEMAKNVTELVRNLLDSKIEPEEFTNRLYNELKSSPQPYLVPFLK
KSLPAVRQLTPNSQLFIQQCVLQKGGIISTAAITAQQAVKQTCVTVVANSKTIEPAELAH
PPKPAQLIVQQPRVVIKPPASTAQSQQSAQIVNRIQLKTPVTTTLRPSPCPSGTVVKQAA
VLGPKAIRVHFKENGAALFRDEDDINDVASMAGVNLNEENECILATNSELVGSVIRSCRD
EPFLLMSALQKNILETGKRHGITEVNLDVVSLVSHATQERLRTLVEKMTVAAQHRTRSYK
DDSRNLLLNDTRSQLKFFEQLDRVEKQRKDEEEREMLLRVAKSCSNKEDPDQLRLKQRAK
EMQQLELAEMQQRDANRTALAAIGPRKKRPLDFLGYGSGSETVGIGDVTGASQSAIPKQF
SRLRTTRASLKDLIFCMEQEQATRQSITLYRAFLK
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgcaaccagaaagttggaacaaaagccagagtgtcaacggtggaaatgtttccgtaaac
ggcgtgagctgccagtcgagtgcagtgtttgttacaaatggcgtaactggacatgttcat
acaaacagtgcagctctgactacagctacgacttgtccaagtgacgtcaaggcagtttcc
aatggccagacttcgcttataccagcagcaactatgtcagattctgctccaaataatcaa
acttttacactgagttcctgtaaaccacaaacggtgatgactgtgcctaaatcacctggt
tctataatgcagaaatctgttgtaatttcatctagtttaaatagcgagataactacaaat
attttaaatacgtctacacatatgccagcatctttagacagtacagtaccaaaaatagtt
gtacatacaagtaagcctggagcaagcgcacatgtaatcataggtagtaagccagttcag
gagagtacaaccatgactagtgcgaacagccattcctcagttgtcagccactgccaacct
ttgcagactgtaaatttatcgggacagacaagcatgggtaaaagcttggcacctgcacct
cagactggaatggctgcaacaacttctgtggaatctacctcaaaagtgacaagagtagcc
gccatcgctcaaacaccagggaaggggactgtacttgttgtaccaagagtgagtactcct
cagcagaatggaacaccacaggctctacagaccactacaatacagctacctgcgaacttt
caaatcccacaagggatggtacttgtcagaagtgacagaggtcagctgatgttggtatct
caacaagccttagcccaagctcaagcacaaggggctggactccccaggcatgctgctact
atgcctactgtacaagcttctacactgcagaccacaggaattgctgtttctgcaacatca
gttaaaacagtgagacccccagctccagcccctaccacagcagagggatccaaaggaaag
tctgttgcacagagcactgtcactgcagagacagtagataatgcaaaaaagtgcaagaat
tttctcgtgacattaattaagttagcctccagcggaacccattctgctgaaatggcaaag
aatgttacggagctggtgcggaaccttctggattcaaaaatcgaaccagaggaatttacg
aacagattgtataatgaactgaagtcctccccacagccttatcttgtgcctttcctcaag
aaaagtttaccagcagttcgtcagctgaccccaaactctcagctcttcatccagcagtgt
gttctgcagaaaggtggcattatctccacagctgcaatcacagcgcaacaagctgtgaaa
cagacttgtgtaacagtggttgccaacagcaaaaccatagaacctgcagagcttgcacac
ccaccaaagccagcacagctgatagttcagcaaccaagagttgtgataaaaccaccagca
agcactgcgcagtcccagcaatcagcacagattgtgaacagaatccagctcaagacccca
gtgacaaccactctccggcccagtccgtgtccttcaggtactgttgtaaagcaggcagca
gttcttggacctaaagcgatccgtgtgcatttcaaagaaaatggagcagcccttttcaga
gatgaagatgacatcaatgacgtggcttctatggctggagtcaacttgaatgaagagaat
gaatgtatcttagccacaaactctgagctggtgggatcggtaataagatcctgcagagat
gagccatttcttctaatgtctgccctgcaaaagaacattttggaaacaggtaagagacat
ggcattacagaagtaaatctggatgttgtgagtcttgtctctcatgccacacaggagcgc
ttacggacactggtagaaaaaatgactgtggcagcacaacatcggacaagatcatacaag
gatgatagtagaaacttactgctgaatgacactcgatctcagctgaagttctttgagcag
cttgatcgtgtggaaaaacaaagaaaagatgaagaagagagagaaatgttgctacgtgtt
gcaaagagttgctccaataaagaagatccagaccaattgaggttaaaacagagagccaaa
gagatgcagcagttggaattggcagagatgcaacagagagatgcaaatcgaacagcgctt
gcagccattgggccaaggaagaaacgaccattagacttcttaggttatggatctggtagt
gagacagttggcatcggagatgttactggtgcctctcagtcagcgattccaaagcagttc
tcacgtctaaggacaacccgtgccagtctcaaggacctcatcttctgcatggaacaggag
caagccacgaggcaatcaatcaccttgtatcgtgccttcctcaaatag
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