Polyodon spathula (Mississippi paddlefish): 121313540
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Entry
121313540 CDS
T07273
Name
(RefSeq) laminin subunit alpha-1-like
KO
K05637
laminin, alpha 1/2
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04510
Focal adhesion
pspa04512
ECM-receptor interaction
pspa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121313540
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121313540
09142 Cell motility
04820 Cytoskeleton in muscle cells
121313540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_G_1
Laminin_EGF
Laminin_G_2
Laminin_B
Laminin_N
Laminin_I
Laminin_II
Laminin_G_3
TS_C
Motif
Other DBs
NCBI-GeneID:
121313540
NCBI-ProteinID:
XP_041102146
LinkDB
All DBs
Position
3:85006811..85074065
Genome browser
AA seq
3097 aa
AA seq
DB search
MKSFLALILLLAASSVKCNQRGLFPAILNLASNAEITANASCGETGPEMFCKLVEHVPGR
PIRNPQCRTCDSASPNPRERHPISNAIDGTNNWWQSPSIKNGRQNHWVTITLDLRQVFQV
AYIIIKAANSPRPGNWILERSMDGIEFQPWQYYAISDTECLTRYNVTPRIGPPTYKRDDE
VICTSYYSRLVPLEHGEIHTSLINGRPSADDLTPALLEFTSARYIRLRLQRIRTLNADLM
TLSYRDPKEVDPIVTRRYYYSIKDISVGGMCICYGHAQSCPWDETTKKLQCVCEHNTCGE
SCNKCCPGYHQKPWKPGTLSVGNTCEKCNCHNKTEDCYYNQTVASSMMSMNIAGQFAGGG
VCIDCTQNTAGINCETCVDGYYRPHTVSPYDENPCVECGCDLNGSQHSVCIKDDNHADLQ
KGLLPGKCHCKEGYAGEKCDRCAFGYSGYPYCVKCNCSLIGSINLDPCAEQCICKENVMG
DNCDLCKRGYYNLHKSSPEGCTECFCFGVSDVCESISWPLTQVLNIDGWLMPVRPIPITS
SDRLDHNDSSHISFNISEESRILPSQSSWSAPESFLGNKLTAYGGYLNYTLSYDVPMESL
DLQLVSDFDVIIGGNGKTLHTRLNAQLLLQPYKEQTVAVEMLPRNFIDFYTSRATEKDRL
MTVLANLTHLQILASFNNTSDVVLRLSSVSLDTATVNAIDLKPAMDVEHCECPWGYTGTS
CESCSPGHYRVDGILFGGICQLCECNGHATECDIHGICLDCKHNTTGPHCEQCMPGFYGD
PSDGMPDDCQVCTCPLNIPSNNFSPTCYLDSAGEVMCNQCAPGYEGPRCERCANGYYGDP
TVPGELCVPCDCNGNVNPLEPGHCDTRTGECLKCVGNTTGSHCERCVDGYFGDAIVAKKC
QDCGCHVNSSYSSVCDPESGKCECRPNVTGEKCDRCLPGHFGLSSGLGCQTCNCNLAGSL
SDSCDDEGQCPCVPGVAGEKCDKCAHGFYDFQDDGCTPCNCAHTHNNCNMETGQCICPPH
TAGVKCELCEANHWGHDSKLGCKACDCSLTGASNSQCDLSSGQCQCNPGFRAEKCSECAL
GFRAYPECAACNCNITGTREEYCDEKQGVCGCEEDSAMCSCKVNVIGPGCDECKLGTFAL
SADDPLGCSPCFCFGVSETCEELGGLVRIPITLTPDQETLHVVTQSDLSGTLDGVFLQSP
DILLDAALVKQSLYTEPFYWRLPEQFQGNKLLAYGGKLRYTAAFYALEDSGISNFEPQLL
IKGGRTSKLVIYRDVPAPDNGVKTSQEVDLKEREWMYFNSVSDQAVSHSDFMSVLSNIQY
ILIKASYGGGLQQSRISNISLEIAVDSDEMNADRETAHGIERCKCPSGYAGLSCQECAPG
FYRQRLTELSVQGPRPLIEPCVSCQCNNHSQTCNLDTGKCQDCQDNTAGDHCNLCAPGYY
GKVRGSISDCSLCACPRGNTNSFSPTCVLEGVDDYRCNACMPGYEGQYCERCSLGYYGNP
SEHDGSCQLCKCNPTGSVHNLCDKLSGHCVCKPGVRGLLCDECEPRHILMGTECTSCNDN
CTGMLLNDLENLELSIQSVNLTGIILAPYSLLSSLENTTDQIKMLLSPERNSSFLLKKAE
EQLSGLAKDISQLHQKTTQAFSQEQDLVNSTERTVNWSQQLLGFITKVQTAIQALVELAS
NLNGTLGNNLELTNSTKLQEEVSAVLEMMRNKDFTQQHQNTTNGFKAAEALLLRVQKEFE
KPQKDVKELKERIVAILSDHSSKLQDARNLVNEAFTKASETNRLLRAMSSNLAAFDDKKQ
NASSNHFLTIEMTEEAQATMADGLDIAADVVNASSQLEGHKDELYLWNPKLRKQVDNLVM
QMTKRSVLDLVYNAEDHAAGLKKLADSLHNALSDVRNVSFNATNAAQANSNIKVNTEKAE
RLAEQANSTTAAAWNLALFAEGSLKDAGAKSLQQSSRLLSEAAGLNNKTDGLMSDLSGLT
EQVDKIRHNTQNISKQLSEPLQLLRSIPSNISVQVLVARKHAMGANVSAVEALQHLEDFN
QKLEEASSAVIRANETVKRTNELFSDSAKTANAAEKKVKEVETQTSLLFERLKPLKMLED
NLSRNLSEIKELINQARKQAASIKVAVAAEQDCVRAYKPDISSSNYNTLTLIVKTSQPDN
LLFYLGSSTNVDFMALEMRRGKVSFLWDVGSGFAKLEYPDIQINNDKWHRISATRFGKTG
SLTVQELKSSQTPTVKTATSSGTSTVLDVNKSTLVFVGGLGGQIKKSLAVKVTHFRGCVG
EASLNGKNIGLWNYAEREGKCRGCFMSPQDEDTSFHFDGSGYSVVEKALRSTVTQVVMLF
KTFSPNGLLLYLASNGTRDFTSIELVDGKVRLTFELGSGPLSLITDKTYNSGNWYKIAFH
RTKQKGYLAVMDAYVPTNRETKEGTTSGSASDLNRSDKDPIYIGGLPRSRPVRRQLVTRS
YVGCIKNVEIARSNFDLLKESYGVKKGCILEPIRSVTVFNEGFLELHPMSLAPESELMAT
FSTKNDTGIILAGISKGGTRRRRQTHLPFFAVMLINGQVEVHMNTGEKGHTRKAVIKSPA
GSYSDGEDHSVILHRSKRLLTVQVDEGSLAEMRLAPSAESSPLNVSSFYIGGVPNGDGAD
MLKTDKSFYGCIRNLGYNMELLDLTTAVRYHNIDMDSCLLEERPKPVIQPEEGDLESELQ
PSPTPARPVTTIEQSFKTQGPAKCVEEEIPVSVPNAHQFGLTRNSHMVLSFDESTIRRKF
SIQLTFRTFASSGLVYFMAHQNQVDYAALQLMEGSLHFIYDLGKGSARVTLPHVVNDGQW
HTVKTDFAKKKATITVDGKESSPVGAVGDGNTLDVEGKLYLGGLPLDFTAKKIGNVTHSV
PACINNVMLNNKPLDRDNPISVYAVNRCYEAAQEGTHFDGTGFAALAKGYKVRSDLIISL
EFRTPLQSGVLLGISSAKVDAVGLELVDGKVLFHVNNGAGRITTTYSPSDSSSLCDGKWH
KLLANKSKHWFSITIDGHTVRAHNPYPQSTSAETNNPIYVGGFPGDVKQNCLTIKTPFQG
CMRNLRLVKGEHSEAYYFSGAFELRGVFPNSCPGAEH
NT seq
9294 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagcttcttagcattgattctgctgctagctgcatcctccgtgaagtgcaatcaa
agaggtctttttcctgccattctgaatttggccagcaatgctgaaatcaccgccaatgcc
agctgtggagagactgggcctgagatgttctgcaagcttgtggagcacgtcccaggcaga
cctattcgcaacccacagtgccgcacctgtgacagcgccagtccaaatcccagagaacga
catccaatctcaaatgcaatagatggcaccaacaattggtggcagagccccagcatcaaa
aatggcaggcagaaccactgggtaacaatcaccttggatttgcgacaggtctttcaagtg
gcatacattatcatcaaggctgccaactctcctcggcctgggaactggatcctggaacgt
tctatggatggcattgagtttcagccttggcagtactatgctatcagtgacacagagtgc
ttaacacggtataatgtcacaccaaggataggaccaccgacctacaagagggacgatgaa
gttatctgcacatcctactattccaggctggtcccactcgaacatggagagatccacaca
tccttgatcaatggcagacctagtgctgatgacctcaccccagccctgttggaattcacc
tcggctcgatacatccggctccgtctgcagagaattagaacactcaacgctgacctcatg
actctcagctaccgggaccccaaagaagtggatccaattgtaacacgcaggtattactac
tctatcaaggatatctctgttggaggaatgtgtatctgctatggccatgctcaaagctgt
ccctgggatgaaacaacaaagaaactgcagtgtgtatgtgagcacaatacttgtggggag
agttgtaataaatgttgccccggctaccatcagaaaccctggaaacctggaactctctca
gttggcaacacttgtgaaaaatgcaactgtcataacaaaacagaagactgttattacaac
caaacagtggccagtagcatgatgagcatgaatattgctggtcagtttgctggtggaggt
gtttgcattgactgtacccagaacaccgctggcatcaactgtgaaacctgcgttgatggc
tattacagaccacacacggtatctccttatgatgagaatccgtgtgttgagtgtgggtgt
gatttgaatgggtctcagcattcagtttgcataaaggatgacaatcatgcagatctccag
aaaggtttgcttccagggaagtgtcactgcaaagagggctatgctggagagaagtgtgat
cgctgtgcctttggttacagtggatatccctactgtgtgaagtgtaactgcagtttgata
ggcagtattaatttggacccctgtgcagagcagtgcatatgcaaggaaaatgtaatgggt
gacaactgtgacctctgtaaacgagggtattacaaccttcataagagcagtcctgaaggc
tgcacagagtgtttctgtttcggagtgtctgatgtgtgtgagagtatttcctggcctcta
actcaggttttaaacattgatggctggttgatgcccgttcgtccaattcccattaccagc
agtgacagattggatcacaatgactcaagccatattagcttcaacattagcgaagaaagc
aggatattaccatctcagtcctcctggtcagctcctgaaagctttttgggaaacaagctg
actgcttatggagggtacctgaactatacattatcttacgatgttcctatggagagcttg
gatcttcagttggtgtctgattttgatgtcattattgggggaaatggcaagactttacac
acaaggttaaatgctcagttgctgcttcagccctacaaggagcagactgttgctgtggag
atgctgccgaggaactttattgacttctatacgagcagagccacggagaaggacaggttg
atgacagtcctggcaaacttgacccacctgcagattctggcctcctttaacaacaccagt
gatgtagttctaaggttaagttctgtatctttggacacagctactgtgaatgctattgat
ctaaagcctgcaatggatgtggagcactgtgagtgtccgtggggttatactggaacgtct
tgtgagtcgtgcagccctggtcattatcgagttgatgggattctgtttggaggcatttgc
cagctatgtgaatgcaatggccacgccactgaatgtgacattcatggtatctgcttggac
tgcaagcacaacaccacagggccccactgtgagcagtgcatgcctggtttctatggtgac
ccatctgacgggatgcctgatgactgccaagtctgcacctgtccgctgaacatcccatcc
aacaatttcagtcctacctgctacctggacagcgctggagaagtgatgtgtaatcagtgt
gcgccaggctatgagggacctcgctgtgaaaggtgtgcaaatggttactatggggatcct
acagtgccaggggaattgtgtgttccttgcgactgcaatggcaatgtgaacccacttgaa
cctggccactgtgacacacgaactggagaatgtctgaaatgtgttgggaatacaacagga
agccactgtgagaggtgtgtggacgggtactttggagatgctattgttgctaaaaagtgc
caagattgtggctgtcatgtgaacagctcctactccagtgtctgtgatccagagagcgga
aagtgtgagtgcaggcccaacgtcactggggagaaatgtgaccggtgtctgcctggtcac
ttcggcttgagcagtggtcttggttgtcagacctgtaactgcaatctggcggggtcactc
tctgacagctgtgacgatgagggacagtgtccctgtgtcccaggagtggccggagagaag
tgtgacaagtgtgcccatggcttttatgacttccaagatgatggctgcactccctgcaac
tgtgcccacacccacaataactgtaacatggagacgggccagtgcatctgcccacctcac
actgcaggggtgaaatgtgagctctgcgaggccaaccactgggggcatgattctaaactg
ggatgcaaggcgtgtgattgcagtcttactggcgcatccaactctcaatgtgacctgtcc
agcggccagtgtcagtgcaaccctgggttcagggcagagaagtgtagtgagtgtgctctg
ggattccgagcctacccagagtgcgcagcctgcaactgcaacattactggtacgagagaa
gagtactgtgatgagaagcagggtgtgtgtggctgtgaggaggactcagccatgtgttct
tgcaaggtgaatgtgattggccctgggtgtgatgagtgtaagctggggacctttgccctt
tctgctgatgacccattgggatgcagcccttgcttctgctttggcgtgtctgagacttgt
gaagaacttggaggacttgtgaggattcctatcacccttacacctgaccaggagacccta
catgtagtcactcagagtgatctgtctggaacgctggatggtgtgttcctgcagtctccg
gacattctgctggatgctgcactagtcaagcaatcgctatacactgagcctttctactgg
agattaccggagcagtttcagggcaataagctgctggcctatggaggaaagctgaggtac
actgcagctttctatgcccttgaagactctggcatctccaacttcgagcctcagttgctt
attaaaggaggacgcacgagtaagctcgtcatctacagggatgtgcctgctcctgacaat
ggggtgaaaaccagccaagaggttgacctgaaggagcgcgaatggatgtatttcaactct
gtctctgaccaggctgtctctcactctgatttcatgtctgtgctcagcaacattcagtac
attctcatcaaagcctcctatgggggtggtttacagcagagcaggatttccaacatctct
ttagagattgcagtggattcagatgaaatgaatgctgatagagaaacagcacatggcata
gagagatgtaaatgcccatcaggttatgctggcctttcatgtcaggagtgtgcaccagga
ttctacaggcagaggctgacagagctcagtgttcaggggccacgtccactcattgagccc
tgtgtgtcgtgccagtgcaacaaccacagccagacttgtaatctggacactgggaaatgt
caggattgtcaggacaacacagcaggtgatcactgcaatctttgtgcaccaggatactat
ggaaaagtcagagggtcaataagtgactgctcgctctgtgcttgtccacggggcaacaca
aacagtttcagccccacttgtgttctagagggtgtagatgactacaggtgtaatgcctgc
atgccaggatatgaaggacaatactgtgaaagatgctctttgggttactatgggaaccca
agtgagcacgacggtagctgtcagctgtgcaaatgcaatccaactggatcggttcacaat
ctctgtgacaaactctcagggcactgcgtgtgcaaaccaggagtgaggggtctcctctgt
gacgaatgtgaacccagacacatcctgatgggcactgaatgcacatcttgcaatgataac
tgtacaggaatgctgctgaacgatctggagaacttggagctgtcaatacagtctgttaac
ctgacaggaattatcctagcaccctacagcctgctatcttcattagagaacaccactgat
caaataaagatgcttttatcccctgagaggaattccagcttcttgttaaagaaggctgaa
gagcagctgtctgggcttgctaaagacatcagtcagctgcatcagaagacaactcaggct
tttagccaggagcaggatcttgttaattctacagaaaggactgttaactggagtcaacag
cttttgggttttattaccaaagttcaaacagctattcaagctcttgtcgaactagcaagt
aacctgaatggcactcttggcaataatctggagctaaccaacagcacaaaactacaggag
gaggtctctgcagtgctggagatgatgagaaacaaagattttacccagcagcatcagaat
actacaaatgggtttaaagctgctgaagcccttctcctgcgggttcagaaggagtttgag
aagccgcagaaggacgttaaggagctgaaggaaagaattgtcgctatcttgtctgatcac
agcagcaaactgcaggatgcaagaaacttggtgaatgaggctttcaccaaggccagcgaa
accaaccgccttcttcgtgccatgtcaagcaatctggcagcttttgatgataagaaacag
aatgccagtagcaaccacttcttgacaattgagatgactgaagaagcacaagcaacgatg
gctgatggcttggatattgcagcggatgttgttaatgcatcttctcagctagaggggcac
aaagatgagctttacctttggaatcctaaactgagaaaacaagtggacaaccttgtgatg
cagatgacaaagagaagcgtgctagacctggtgtacaacgcagaggaccatgctgctgga
ctgaagaaactggcagactcacttcacaatgcgctttcagatgtaaggaatgtttcgttt
aatgcaacaaatgctgctcaagccaattctaatatcaaagtcaacactgaaaaagcagag
cgtttggccgaacaagctaacagcaccacagctgctgcctggaatttggcactgtttgct
gaaggctctttgaaagatgctggagcaaagtctctgcagcaaagctccaggcttctatct
gaggccgctggtctgaacaataagacggatggtctcatgagtgatttaagtggactgacg
gagcaagtggacaagattcgacacaatacccaaaatataagcaaacagcttagtgaacca
ctgcagctactgcgctccattcccagcaatatcagtgtgcaagtcttggtagcaaggaag
catgctatgggagcgaatgtctcggctgttgaagctctccaacacctcgaagatttcaac
cagaaactagaggaggcctcttcagcagtgatcagagccaatgaaactgtgaagcgaaca
aatgaactgttcagtgattctgcaaagactgctaatgcagcagagaaaaaggttaaagaa
gtggaaacacaaaccagcctgctctttgaacggctgaaaccgctgaaaatgctggaagat
aacttgagcagaaacttgtctgagattaaggaactgataaaccaggcacgaaaacaagca
gcttcaattaaagtggcagtggctgctgaacaagactgtgtacgtgcctacaaaccagac
atctcctccagcaactacaacactctgacgctgatcgtgaaaacatcccagcccgacaac
ttgctcttctacttgggcagcagcaccaatgttgatttcatggctctggaaatgcgacgt
ggaaaggtgtcttttctctgggatgtaggctctggatttgcaaagttggagtaccctgat
attcagattaacaatgacaagtggcacaggattagtgcaaccaggtttggaaagactggt
tctcttacagttcaagaattgaaatcttcacagacccccactgtaaagacagcaacctcc
tctggcacatcgactgtgctagatgtgaataaatccactcttgtctttgtggggggtctt
ggtggtcaaattaagaaatctttggctgtgaaagtgacccacttcagaggctgcgtggga
gaagcttcacttaatgggaaaaatattgggctgtggaattacgcagagagagaaggcaaa
tgtaggggctgcttcatgagtccccaggatgaagacacttccttccattttgatggcagt
gggtattccgttgttgaaaaggctcttcgctcaacagttacacaagtagtgatgcttttc
aaaaccttctctccaaatggattgctgctttacctcgcttctaatggaacgagagatttc
acgtctatcgagctggtggatggcaaagtcaggctgacctttgagctaggatccggaccg
ctcagtctcatcacagataagacatacaacagtggaaactggtataaaattgctttccat
cgtaccaaacagaaaggctacttggctgtgatggatgcatatgttcctacaaacagagaa
accaaagagggcactacctctggttctgcctcagatctcaatcgttcagacaaggacccc
atttacattggtgggctgcctcgctcaagacctgtcaggagacagcttgtcaccagatct
tacgtgggctgcatcaaaaatgtggagatcgcccgctctaactttgacttgctgaaggag
tcctatggggtcaagaagggctgtatattggagccaattcgcagtgtgacagtcttcaat
gagggattccttgaacttcaccccatgtctctggcacctgaatcagaacttatggctacc
ttctccacaaagaacgacaccggcattatcctggctggaatcagcaaaggaggaacgcgc
agacgaaggcagacgcacctgcccttttttgcagttatgcttatcaatggccaagtggag
gtccacatgaatacaggagagaaaggccacactagaaaagctgtgataaaatctcctgct
ggaagctacagtgatggagaggaccattctgtcatcctgcatcgcagcaagaggttgttg
actgtgcaggtggacgaaggaagcctggctgagatgagacttgctccgtcagcagagagc
agccctctcaatgtctccagcttctacatcggaggtgttccaaatggcgatggcgctgac
atgctcaagacagacaaatccttttacggctgtatcaggaacctgggctacaacatggaa
ctcctggacctcaccactgcagtgaggtatcataacatagacatggacagctgcctgctg
gaggagaggcccaagccagtcatccagccagaggagggtgatctagagtctgagctccag
ccatctcctactccagccaggcctgtcaccactattgaacagagcttcaaaacccagggc
ccagccaagtgtgtagaagaagagattccagtaagtgtccccaatgcccaccagtttggt
ctgaccagaaatagtcacatggttctgtcttttgatgagagcacaataagaagaaagttt
tccatccagttaaccttccgaacctttgcatcaagtggtctggtttacttcatggcccat
caaaaccaggttgattatgcagctttgcagttgatggaggggtccttgcattttatctat
gacctcggcaagggttcagcgagagtgacgcttccacatgtagttaatgacggccagtgg
cacacagtgaaaacagactttgctaagaagaaagctacaatcactgttgatgggaaggag
tcgtctcctgtcggggctgtgggagatgggaacaccttggatgtggaagggaagctttac
ctgggaggtctccctctggacttcactgccaagaagattggaaatgtgacgcacagtgtt
cccgcctgcatcaacaatgtaatgttgaataacaagccactggaccgagacaatcccatc
tctgtatatgcagtaaacaggtgttacgaggcagctcaagagggcacacactttgatgga
actggatttgcagctttagcaaaaggctacaaagtcaggtcagatttgattatctcattg
gagttccgcacgccactgcagagtggagtcctgctgggaataagcagtgccaaggtggat
gcagtaggactggaacttgtcgatggcaaggttttatttcatgtgaacaatggggcagga
agaataaccactacctacagtccaagtgactccagcagcctctgtgacgggaagtggcac
aaactcctggctaacaaaagcaagcattggttcagtataaccatcgatggacatacggtt
cgggcacacaacccctatccccagtccacatctgctgagaccaacaacccaatctatgtg
ggaggttttcctggtgatgtgaaacagaactgtctcactatcaagactccatttcagggc
tgcatgaggaacctcaggcttgtcaaaggagagcacagtgaggcctactacttcagcgga
gcttttgaactccgtggggttttccccaactcctgcccaggtgctgagcactaa
DBGET
integrated database retrieval system
