Polyodon spathula (Mississippi paddlefish): 121313544
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Entry
121313544 CDS
T07273
Symbol
pex1
Name
(RefSeq) peroxisome biogenesis factor 1
KO
K13338
peroxin-1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04146
Peroxisome
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
121313544 (pex1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121313544 (pex1)
Membrane trafficking [BR:
pspa04131
]
Autophagy
Pexophagy
Other pexophagy associated proteins
121313544 (pex1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
PEX-2N
PEX-1N
AAA_lid_3
AAA_16
AAA_14
nSTAND3
TIP49
AAA_22
NACHT
RuvB_N
AAA_33
AAA_28
AAA_5
IstB_IS21
RNA_helicase
AAA_18
AAA_7
ABC_tran
AAA_2
Mg_chelatase
Sigma54_activ_2
Sigma54_activat
Bac_DnaA
T2SSE
Zeta_toxin
AAA_29
DUF815
AAA_25
Parvo_NS1
ATPase_2
ATPase
SLFN-g3_helicase
APS_kinase
AAA_17
cobW
IPT
AAA_23
Motif
Other DBs
NCBI-GeneID:
121313544
NCBI-ProteinID:
XP_041102153
LinkDB
All DBs
Position
3:complement(85379175..85398431)
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AA seq
1278 aa
AA seq
DB search
MFVSHGIQPVTLAFTNTKNCFLNLTSSLATQLRLQENQAIELSWGLHQSVFLSWTRCQRS
AFLEENVVEINRQLGDKLGIKDQEQAFLRPCFQVLSMQQVFVEPLSADDWEILELHSSTL
EQRLLDQIRIVYPNGVFPVWVDQHTVIYIKIGSLTPAAPYGRLEQLTELIVSPKLRHTED
SLLDFSSRAGRNPNVSKFQNTYGDRNIDIPATKSALGTKMTENQEENIQNIPGNQKVCTS
GRITNLRSLIRYMFTGSTDSNKEIPSVPSVPSVLTDSVFRVCRSSPFSTDHQNTAYVNQA
TTVHILPWNHQSQDGDCCQSVMTYGKLTKLLSPNELKEKAKLNMLQPDKRKSSGNSENAT
GKQSSSGRSQEDIEPTVVRIICHGAEDQEYTKKFSYGNEKLYCGKVWIPESLRRRLNIEV
CAAVRLRPLKSTPVIASTVRLQPLQMLPHKVNDQDVRSAFLHGLQAQRNDKMSWLTGRAS
YVQLPVNEVQVEFCLTVITPEAVSCRSDEMFLLSSSLIQETDIQVMMQPPTKEADTITVK
DEIDQTLSFSTLRCLGGVEEVGRTAFEHIIHSLRGRPLSQELLFVAPGLRNGALLLTGPK
GSGKTALANALCREAADKLDAYVEVIDCKQLRGKRCETVRKKLEEAFAEAVWRQPSLLLL
DDLDHIAGAVTSPEQEQGPEAVLGKQLAQTLKDLASDTVVHGSLIALIATSQSERSLHPS
LVSVQGSHFFQCFTSIKPPSQVQRNEILRAVIQNKSSIAEETWQVIDTQSLARETEGFVA
RDFTLLVERAIHASVVNNRNTSTQELFLATCDFHQALKGFTPSSLRNANLHTPKDLGWER
VGGLHEVRQLLMDTIQLPAKYPALFANLPIRQRSGVLLYGAPGTGKTLLAAAVAKESGMN
FISIKGPELLSKYIGASEQAVRDVFNRAQAAKPCILFFDEFDSIAPRRGHDSTGVTDRVV
NQILTQLDGVEGLQGVYVLAATSRPDLIDPALLRPGRLDKSLYCPPPDQGARKEILGALS
LSVPLAEDVDFDLIAANTELFTGADLKAVLYNAQLEAVHSNLATCLLDVGSGSDSDVSLS
SMIFLNHSSGSDDSNGEVEGELERSLVCLESSELVLEDPRQNAWRLYFGSSYESELGNQT
PSELCLSGPNSMTHEITGASIRDVVSCQMPVLMSSLQEGYQELNQEQAEQLRAEINNIRS
NYRNRHMEEQLHLQSGHSKPAVLICQSHLLTALSNTRPSIPHQDWTKYTDLYNSFGNSCE
GKSQGGPNFKTGQRVTLA
NT seq
3837 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtcagccatgggattcagccagttacgctggcttttacgaacacaaaaaactgt
tttctgaatctcacttcaagtcttgcaacacagcttcgccttcaagagaaccaagcaatt
gagctttcctggggtttgcatcagtctgtattccttagctggacaagatgtcaacgcagt
gctttcctggaggaaaatgttgtggagataaacagacaacttggggacaaacttggaatc
aaggatcaggagcaggcatttcttaggccctgtttccaagtcctgtccatgcagcaggta
tttgttgaaccactctctgctgacgactgggaaatattggaacttcatagttcaacacta
gaacaacgcctcctcgaccagattaggattgtgtatccaaatggagtcttcccagtgtgg
gtagaccagcacacagtcatttatattaaaataggatctctcacacctgccgctccctat
ggccgactggagcaactcactgaacttattgtctcgcctaagctacgccatactgaggac
agtctcttagatttctcctctcgagctgggagaaaccccaatgtaagcaaattccaaaac
acgtatggagatagaaatatagatataccagccactaaatcagcacttggaactaagatg
accgaaaatcaagaagaaaacattcagaacatacccggaaatcagaaagtctgtacatct
ggtagaattactaatttaaggagcttgattagatacatgtttacagggagcacagacagc
aacaaagagattccctctgttccgtctgttccatctgttctcacagactctgtattcaga
gtctgcaggagttcaccgttctctacagaccatcagaacacagcgtatgtaaaccaagca
accactgttcacattctgccatggaaccaccagtcacaggatggagactgttgccagtct
gtaatgacgtatggcaagctaacaaaactgttgtcaccaaatgagctcaaagaaaaggca
aaactgaacatgctgcagccggacaagaggaaaagcagtgggaactctgaaaatgcaact
ggaaaacaatcctcatctggtcgtagtcaggaagatattgaacccactgttgtcaggatc
atatgccatggggctgaagaccaggaatacacgaagaagttcagttacgggaatgaaaaa
ctatattgtggaaaggtttggattcctgaaagcttgagaagaaggttgaacattgaagtg
tgtgcagctgtaaggttacgtccattgaaatccacccctgtgatagcatccactgtccgg
ctgcagcccttacaaatgctgcctcataaagtaaatgaccaggatgtcagatctgctttc
ctccacgggcttcaagctcagagaaatgacaagatgtcatggttaacaggaagggcgagc
tacgtgcagttacctgtgaacgaagtccaggtagaattttgcctgactgtgattacgcct
gaggctgtgagctgcagatcagatgagatgtttctgttgtcttccagtttgatacaagag
acagacatacaggtaatgatgcagcctccaactaaagaagcagacacgataacagtcaaa
gatgaaatcgaccagactctttctttttcaacacttaggtgtttgggaggagtagaagaa
gtgggtcgcacagctttcgagcatattattcacagcctgagggggcgccctctctctcaa
gagctgctgtttgtagctccaggtctaagaaatggagctcttctgttaactggacccaag
ggtagtggaaagacagctcttgcaaatgccttgtgtagagaagcagctgataaactggat
gcctatgtggaagtgattgattgcaaacaactgcgaggtaagaggtgtgaaacggttcgt
aagaagctggaggaggcgtttgcagaggctgtgtggagacagccctcccttctcctcctg
gatgacctggatcacattgctggagctgttacctcaccagagcaagagcagggcccagag
gctgttctgggaaaacagcttgcacagactctgaaggatctagccagtgacactgttgtc
catgggagtctgattgccctgatagccacgagccagagtgagcgttctttacacccctct
cttgtgtcggtgcaagggtctcacttctttcagtgctttactagcatcaagcctcccagt
caggtccaaaggaatgaaatcctgagggctgtgattcagaataaaagcagcattgctgaa
gaaacatggcaggtgattgacactcagtctctcgccagagagacagaagggtttgttgcg
agagatttcaccttgctggtagagagagccatacatgccagtgtggtcaacaacaggaac
acatcaacacaagagttgtttttggctacctgtgactttcaccaagcactcaaaggcttt
acaccgtcctcactgagaaacgctaacctgcacaccccgaaggacctgggctgggagcgt
gtcgggggcttgcatgaagtcagacagctgctcatggataccattcagttgccagcaaag
taccctgcattgtttgcaaatctgcccattcgccagcggtcaggagtgctcttgtatgga
gcccccggcacagggaagaccttgttagctgctgcagtcgccaaagagagcggaatgaat
ttcattagcattaagggtcctgagcttctcagcaaatacattggagcaagtgagcaggca
gttcgagatgtctttaacagagcacaggcagcaaagccctgcattctgttctttgatgag
tttgactccattgcccctcgcagaggccatgatagcactggagtcactgaccgagtggtc
aaccaaatactaactcagctggatggagtggaaggattgcaaggtgtgtatgtattggca
gccaccagtcgccctgacttgatagatccagctttattgagacctggccggctggataag
tctttatactgccctccacctgaccagggagctcggaaagagatcctgggtgccctcagt
ctgtctgtgcccttggcagaggatgtggattttgacctcattgctgctaatacagagtta
ttcactggggctgacctgaaggctgtactctacaatgctcaactggaggcagtccactcc
aacctggctacatgcttgcttgacgtgggctctggttcagacagtgatgttagcctgtcc
tccatgatcttcctgaaccacagcagcggctctgacgactctaacggagaggtagaaggt
gagctggagcgctccttggtctgtctggaatcctcggagctggttcttgaggaccctcgg
cagaacgcttggcgcctgtacttcggcagctcctacgagtctgagctgggaaaccagacc
ccctcggaactgtgtttgtctggaccaaattcaatgactcatgagattactggtgcctca
ataagggatgtggtgtcctgtcagatgccagtgctcatgtcatcactacaagagggttat
caagaacttaatcaggagcaggccgagcagctgcgagctgagatcaacaacatcaggtcc
aactacagaaacaggcatatggaggaacagctccacttgcagtcgggacacagtaaacct
gctgtcttaatctgccaatctcatctgctgacagcattgtcaaacaccagaccatcaata
cctcatcaagactggacaaaatacacagatctatacaattcctttgggaactcctgtgaa
ggcaagtctcagggtgggcctaatttcaaaaccgggcaaagagttactctagcctag
DBGET
integrated database retrieval system
