Polyodon spathula (Mississippi paddlefish): 121313780
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Entry
121313780 CDS
T07273
Name
(RefSeq) thrombospondin-4-like
KO
K04659
thrombospondin 2/3/4/5
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04145
Phagosome
pspa04510
Focal adhesion
pspa04512
ECM-receptor interaction
pspa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121313780
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
121313780
09144 Cellular community - eukaryotes
04510 Focal adhesion
121313780
09142 Cell motility
04820 Cytoskeleton in muscle cells
121313780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121313780
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pspa04147
]
121313780
00536 Glycosaminoglycan binding proteins [BR:
pspa00536
]
121313780
Membrane trafficking [BR:
pspa04131
]
Endocytosis
Phagocytosis
Opsonins
121313780
Exosome [BR:
pspa04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
121313780
Exosomal proteins of colorectal cancer cells
121313780
Exosomal proteins of bladder cancer cells
121313780
Glycosaminoglycan binding proteins [BR:
pspa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121313780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
COMP
EGF_CA
EGF_3
cEGF
Sialidase
PigL_N
Motif
Other DBs
NCBI-GeneID:
121313780
NCBI-ProteinID:
XP_041102512
LinkDB
All DBs
Position
1:9431265..9453123
Genome browser
AA seq
956 aa
AA seq
DB search
MTLWKGLLFILQVVLLLRSSLSVPGEYKVYNLLSNPGYITEIVQQGLTAPSVNDVYILST
FKLQPKSGTTIFGLYSPKDNTKYFEFFVLGKLNRAILRNLKSDGKVNVITFNNVQLADGK
RHTVLFRLSGLEQGSSTVELYVDCSLIDTVRDLPTAFTGLPQGPNSLELRTLQKRPLDTL
EELKLVIGGSLTRVAALQECLLQQSDSAQNIVHGNSGISGDTGRQLITQMNQLTQVIGEL
KEVMRQQVKETAFLRNTISECQACGLGGIGPGIPDFDSKPKCTPGSCFRDDLCRETEAGF
ECGPCPDGYTGDGVHCDDVDECRFNPCFPGVRCVNTVPGFRCDACPVGYTGPIVKGLGIT
YAKTTKQVCVDIDECNNGKNGGCAPNSICTNTKGSFRCGGCKAGYIGDQAKGCRPERSCG
NGQLNTCHIHAQCVVERDGNISCVCGIGWAGNGYQCGKDTDIDGYPDEELKCKDIFCRKD
NCMYVPNSGQEDADQDGYGNACDDDADGDGIPNEQDNCVLNPNIDQKNSDLDSLGDACDN
CRTAVNPDQRDTDNDGKGDACDDDMDGDGIKNFLDNCQRVPNLDQKDRDNDGVGDACDSC
IDVSNPNQSDIDNDLVGDSCDTNQDSDGDGHQDSKDNCPNVINSSQLDTDKDGIGDECDD
DDDNDGIPDILPPGPDNCRLVPNRDQIDDNGDGVGDICESDFDQDTVIDRIDICPENAEV
TLTDFRAYQTVVLDPEGDAQIDPNWVVLNQGMEIVQTMNSDPGLAIGYTAFNGVDFEGTF
HVNTVTDDDYAGFIFGYQDSSSFYVVMWKQTEQTYWQATPFRAVAEPGIQLKAVKSKTGP
GEHLRNSLWHTGDSTDQVRLLWKDPRNVGWKDKVSYRWFLQHRPQVGYIRVRFYEGSELV
ADSGVTIDTTMRGGRLGVFCFSQENIIWSNLKYRCNDTIPEDFQEFRAQHFGSDAV
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atgactctgtggaaagggctgttattcattttgcaggttgttttactgttacgctccagt
ttgtccgtaccaggagaatacaaagtttacaacctgctttcaaaccctggatacataaca
gagatcgtgcagcagggactcacggctccctctgtaaatgacgtctacattctttcaacg
tttaaactgcagcccaagtctggcaccactatctttggcctctactctccaaaggataac
accaagtattttgagttttttgtgcttgggaaactcaacagagcaattctacgaaatttg
aagagcgatggcaaggtaaacgtgatcacattcaacaacgtccagctggctgatggaaag
cgacacactgtgctgtttaggctgagtgggttagagcaaggatccagcacagtggagctg
tacgttgactgcagccttatagacacagtgagggacttaccaacagcattcaccggactg
ccacaaggacccaactcgctggagctgcggacactccagaaaagaccactggacactctg
gaggagctgaaactagtaattgggggttcccttacaagagtagcagcactccaagaatgc
ctactgcagcaaagcgactctgcacagaatatagtgcatgggaactctggaatttcaggt
gacactgggcgacagctgattacccagatgaatcagctgacacaggttattggagagctg
aaagaagtaatgaggcaacaggtgaaagaaacagctttcctgaggaacaccatatccgaa
tgccaggcctgtgggttgggtggaattggtcctggaatcccagactttgactctaaaccc
aagtgcactccgggctcttgtttccgtgatgacctgtgtagagagacagaggctggattc
gagtgtggtccatgccctgatggatacacaggagacggggttcattgtgatgatgttgat
gagtgtcgatttaacccatgtttccctggggtccgttgtgttaacactgtgccaggattt
aggtgtgatgcatgtcctgtggggtatactggtcccattgtcaagggattagggatcacc
tatgccaagactactaaacaggtctgtgttgatattgacgaatgtaacaatggcaaaaat
ggaggctgtgcaccaaactccatctgtacaaacactaagggttcattccgctgtggaggt
tgtaaggctgggtacatcggagaccaagccaagggctgcaggccagaaagaagctgtgga
aacgggcagctgaacacctgccacatccatgcgcagtgcgtcgtggagagagatgggaac
atcagctgcgtgtgtggcattggctgggctggcaatggttatcagtgtggaaaggataca
gatattgacggctaccctgatgaagagctcaagtgtaaagatatattctgtagaaaggat
aactgcatgtatgttccaaactccggacaagaagatgcagaccaggacggatacgggaat
gcttgtgatgacgatgcagatggtgacggcattcccaacgagcaggataactgtgttctg
aaccccaacatcgaccagaagaacagtgatttggatagcttgggggacgcctgtgataac
tgccgcactgcagtgaaccctgaccagagggacactgacaatgacggcaagggagacgcc
tgcgatgatgacatggatggggacggcatcaagaatttcctggacaactgccagcgtgtc
cccaatcttgaccagaaggacagagacaatgatggagtgggggacgcctgtgacagctgt
attgacgtcagcaacccaaaccagtcagatatcgataacgatctcgtgggagactcctgt
gatacaaaccaagacagtgatggagatgggcaccaggacagcaaggacaattgccccaac
gtaattaacagctcccagctggacacagacaaggatgggataggagatgagtgtgacgat
gatgatgacaacgatggcattcctgatatccttccaccgggaccagacaactgtagactg
gtgcccaaccgagaccagattgatgacaacggggatggagtaggtgacatctgtgaaagt
gattttgaccaggacacagtgattgacaggatcgatatctgtcccgagaacgcggaggtc
actctaacagatttcagagcctaccagactgtcgtcctcgaccccgagggagatgctcag
attgatcccaactgggtggttctcaatcagggaatggagattgtacagaccatgaacagt
gatcctggactggcaattggttacactgccttcaatggagttgactttgagggcactttc
catgtgaacactgtgactgatgatgactatgctggcttcatcttcggctaccaggacagc
tccagcttctacgtggtcatgtggaagcagacagaacaaacctattggcaagccacgccg
tttagagccgtggctgaacctggcattcagctcaaggctgtcaagtcaaagactggccct
ggggagcacctgcgtaactctctgtggcacacaggcgactccacagaccaggtgaggctg
ctgtggaaggacccgcgcaacgtgggctggaaggacaaggtctcctaccgctggttcctg
cagcacagaccccaggtggggtacatcagggtacgcttttatgaaggctctgaactagtg
gctgattctggagtgactattgacaccaccatgcgcgggggaaggcttggtgtgttttgc
ttctcccaggagaatatcatttggtccaacctgaagtatcgctgcaatgatacaatccct
gaggactttcaggagttcagagcccagcactttggaagtgacgctgtttaa
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