Polyodon spathula (Mississippi paddlefish): 121314001
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Entry
121314001 CDS
T07273
Name
(RefSeq) collagen alpha-1(XXVIII) chain-like
KO
K23619
collagen type XXVIII alpha
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pspa01002
]
121314001
Peptidases and inhibitors [BR:
pspa01002
]
Peptidase inhibitors
Family I2: Kunitz - BPTI family
121314001
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
Motif
Other DBs
NCBI-GeneID:
121314001
NCBI-ProteinID:
XP_041102700
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Position
4:87557350..87602782
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AA seq
1379 aa
AA seq
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MVLRNGLDVKVLDLDFQKDPFTGTDVASQNVDLGMNPDVAHGQNRKKTGWKRSSLILRDE
GKVMLCPLDIAFIMDSSESATNIMFEREKAFVQDFGERVMQMTSPSGMKLNTRLAVLQYS
SIVKIEHPFRDWQNIQVFKNRVRSMVYIGHGTYSSYAITNTTQLFEAETKPGSVKVALLM
TDGVDHPRNPDILGAAATVKNYGIKLFTIGLSALAYESTSIVKLRSIASIPAEQYVHSLT
DPYLQDKLLEQLSRIVVDGCQQPKLQCVCEAGEKGAPGSPGNDGRDGDKGEKGSKLSFSP
MRLRPVSHLLHADQVADYMRLGANMPQEDGTTLYVRCLGVQQAISALGDETFCNICAAFQ
PQVLRKKLDRAMGMECSSPVTELSEALGAATVPPILQLSQSPSQSIPSAHAQPPPSHSRS
PSSEMAKQVRCSRKVREIMDLKAQMAWVLELLAWKQTPSTHLNSSPSPCSFSKFLDAILA
PLWLQGIRVLNYLVDLFPVAGRVSLASMDFLEIKALRANLVLWGERGECGVPGTKGDRGP
EGPPAPRGPRGEKGLIGPTGDQGPEGIPGPKGDRGPTGASGPPGDNGIGFPGPKGDKGSQ
GRPGLTGPIGIGEPGPPGLPGIQGNKGSLGEGLPGAKGDRGYEGPRGTRGLPGLGIKGEK
GDFGPTGLPGSAGLPGIGIQGEKGNQGPAGLIGSRGLPGIGFSGPKLVGGSGLVPHGADL
VGLRADVLTPSPVSKEGDLLLHEVKVELQSRCLHALQHLLERCKGSFIASLSTLRPVSIA
CWTRCVRPAKLIVPQQQLPQLALLLWAKPLPDCGCCVESLLLHALQLGDTAPPSLSFTGQ
SLLPANDVPIDSLVECPTVPGSLSIPCPPLPSREPLQPEPGHDSGLPRGSPDDPHRNGDA
GPQGRAGINGIPGEKGAVGQKGETGSQGPVGPEGAPGKGISGEKGDKGDRGPRGLPGLQG
QVGAMGPKGVTGNTGQPGKPGLSVRGFQGPTGEPGPVGPPGPVGVPGIGIPGPKGERGLP
GPPGSIGPKGDGYPGIQGLPGLPGLPGEAGPEGKGLPGSKGDRGLPGFPGPVGPHGVGLK
GSVGQAGPPGPPGLPGEDIQGPKGEPGFQGVPGPRGPPGEGFPGEKGDRGFSGVRGRQGD
KGELGEPGPTGTPGMPGQKGDMGLTREEIIKIIREICGCVKCKESPLELMFVIDSSESIG
PENLEVVKNFVSDLIVLLNQVGTHIGVLQYSHIYEVVVNLQQHSSQDDMKAAVYSMTYLG
EGTYTASAIKRATQIFQASRPGVRKVTILITDGQADRRDPVKLEAAVREAHFAKIEIFVI
GVLNRTDSFYLDFKNEVNMIASDPVEEHIYLIDESMTFPALDMLLFYTIDIILCLLFDA
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atggttctcaggaatggtctagatgtgaaggttctcgatcttgattttcagaaggatccg
ttcacgggaacggacgttgcatcccaaaatgttgacctaggaatgaacccagatgtagcc
catggacagaacagaaaaaagacgggttggaaaagaagtagccttatactaagagatgaa
ggaaaggtgatgctctgtcctttagacattgccttcatcatggatagctctgaaagtgct
acgaatatcatgtttgagagggagaaggcttttgttcaggattttggtgaaagagtaatg
cagatgacgtcaccttctggcatgaaattaaacaccaggttggcagtgttacagtacagt
agtattgtgaagatagagcaccccttccgagactggcaaaacattcaagtcttcaaaaac
cgggtccgctcaatggtatatatagggcatggtacatattcatcctatgcaatcactaac
accacccaactgtttgaagcggaaacgaagcctggcagtgtcaaagtggcattactgatg
actgatggagtggaccaccccaggaacccagacatcttgggagcagcagctactgttaag
aactatggcatcaagctctttaccattgggttatcagcccttgcttatgaaagcaccagt
attgtcaaactgcgctccatagctagtatcccagccgaacaatatgtgcatagcctgact
gatccataccttcaagataaactccttgagcaattgagtagaattgttgttgatgggtgt
cagcagccaaagttgcagtgtgtttgtgaagcaggagagaaaggagctccaggaagtccg
ggcaatgatggtcgtgatggtgataaaggtgaaaaaggatccaagctgagctttagccct
atgcggcttcggcctgtgtctcacctgttgcacgctgaccaggtggctgactacatgcgg
ttaggggcaaatatgccccaggaggatgggactacattgtatgtgcggtgcttgggtgtc
cagcaagccatttcagccctaggggacgagacattctgcaacatctgtgcggccttccag
ccccaggtgcttcgcaaaaagcttgacagggccatggggatggaatgttcatcccctgtg
actgagctgtcagaggccctaggagctgccacagttccccccatcctccaactgtcccag
agcccctcacagagtattccctctgcacacgctcagccgccaccatctcacagccgctcc
ccatcatcagagatggcgaagcaggtcaggtgctcgaggaaggtgagggaaataatggac
ctgaaggcacagatggcctgggtcctggagttgttggcatggaagcagactcccagcacc
cacctcaatagcagcccctccccctgctccttttcgaagtttttggatgcaatcctagct
cccttgtggctgcaagggatcagggtgctgaactacctggttgatctgttcccagtcgca
ggaagggtgagcctggcttcaatggacttcctggagataaaggctctgagggcaaacctg
gtgttatggggtgaaagaggtgaatgtggggtccctgggacaaaaggagatagggggcct
gaaggaccacctgcaccaaggggacccagaggagagaaaggtttaattggaccaacaggg
gaccaaggccctgaaggaatccctggacctaaaggggatcgtggtccaactggtgcctct
ggccccccaggcgataatggtattggatttcctgggccaaagggggacaaaggttcacag
ggcagacctggacttactggtccaataggcattggggaaccaggaccaccgggtcttcca
gggatacaggggaacaaaggatctctaggagaaggacttcctggtgcaaagggggacaga
gggtacgaaggacccagaggaactcgtggcttaccaggattggggattaagggtgagaag
ggtgattttggacctactgggcttcctggatcagctggccttccaggaattgggattcag
ggagaaaaggggaaccaaggtcctgcaggcctaattggttctagagggctaccagggata
ggatttagtggcccaaaactggttggtgggagtgggctagtcccgcacggtgctgatctt
gtcggactccgtgcggatgtcttgacccccagcccggtgtccaaggaaggtgacctcctt
cttcacgaagtgaaggttgagcttcagtcccgctgcctccatgcattgcagcacctgttg
gagagatgcaagggaagctttattgcttctttatcgacactgcgtcccgtgtcaatcgcg
tgctggacaaggtgcgttcggccggcgaaactcatagtacctcagcaacagctcccacag
ttggctctattgctctgggcaaagccgttgccagactgcggttgctgcgtcgagagtctt
ttactccacgctttgcagttgggggacacagctcccccatcactgtcctttactggacag
tcgttgcttccagcgaacgatgtccccatcgactccttggtagaatgtccaaccgtacca
gggtcactgtcaatcccgtgtccaccactgccaagcagggaaccccttcagcccgaacca
ggacatgacagtggtctcccacgaggctctcctgacgaccctcaccggaatggggatgca
gggccacagggtcgggctggaattaatgggattccaggggagaaaggggctgtaggacaa
aagggtgaaacaggttctcaaggaccggtgggacctgagggggctcctggaaaaggaata
tctggagaaaagggagacaaaggggacagggggcctagaggattacctggattacaggga
caagtcggagcaatggggcctaagggtgtgacaggaaatactggccaacctgggaagcca
ggcctgtctgttcggggatttcaagggccaacaggtgagccaggtccggtaggaccacct
ggaccagtcggggtcccaggaattggaatacctggaccaaagggtgaaagaggattgcct
ggacctccaggatcaattggaccaaaaggggacggctatcccggcattcagggactgcct
ggattgccagggcttccaggagaagcaggccctgaaggaaaagggctgcctggttcaaag
ggagaccgaggattaccaggctttccaggaccagttggaccccatggagttggactcaag
ggatctgttggtcaggctggtccaccaggacccccaggtttacctggagaggatatacaa
ggacccaagggagagccaggatttcagggagtgcctgggcctaggggcccaccaggtgaa
ggcttcccaggagagaagggggatcgtggattttcaggagttcgagggaggcagggtgac
aaaggagaacttggagagcctgggccaactggaacaccagggatgcctggacagaaagga
gatatgggccttactagagaagaaatcatcaaaataatcagagaaatctgtggttgtgta
aaatgtaaagaaagtcctcttgaactgatgtttgtgattgacagttcagaaagcatcgga
ccagaaaacttagaagttgtcaaaaactttgtcagcgacctgatagttcttctgaatcaa
gtaggcacccatattggtgttctgcaatacagccacatttatgaagttgtggtcaacctc
cagcagcactcaagccaagatgacatgaaggcagcggtttactcaatgacatatctcggg
gaaggcacctacacagcaagcgccataaagagagctacccaaatcttccaggcctccagg
ccaggggttaggaaagtgacaatacttataacagatggacaggcagacaggcgtgacccg
gtgaaactggaggccgcggtgagggaggcccattttgccaaaattgaaatatttgtgatt
ggagtattgaacaggactgactccttttacctcgacttcaagaacgaagtgaatatgatt
gcctcggatccagttgaggagcatatttatctgattgatgagtctatgacatttccagct
ttggacatgctgctattctacacgattgacattatcctttgtctgctgtttgatgcatag
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