KEGG   Polyodon spathula (Mississippi paddlefish): 121314039
Entry
121314039         CDS       T07273                                 
Name
(RefSeq) WD repeat-containing protein 48
  KO
K15361  WD repeat-containing protein 48
Organism
pspa  Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:pspa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    121314039
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pspa03400]
    121314039
DNA repair and recombination proteins [BR:pspa03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   FA (Fanconi anemia) pathway
    Other FA pathway factors
     121314039
SSDB
Motif
Pfam: WD40_Prp19 DUF3337 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 WD40_MABP1-WDR62_2nd EIF3I Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_IFT122_1st Beta-prop_SPT8 Beta-prop_SCAP NBCH_WD40 Beta-prop_EIPR1 Beta-prop_DCAF12 ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_DCAF4 WD_LRWD1 Beta-prop_Vps41 WDR54 Beta-prop_IP5PC_F Beta-prop_HPS5 WD40_RFWD3 Beta-prop_NUP159_NUP214 Nucleoporin_N RAWUL WD40_like Tfb2_C
Other DBs
NCBI-GeneID: 121314039
NCBI-ProteinID: XP_041102757
LinkDB
Position
4:complement(1312867..1338577)
AA seq 677 aa
MAAHHRQNAAGRRKVQVSYVIRDEVEKYNRNGVNALQLDPTLNRLFTAGRDSIIRIWSVN
QHKQDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYV
KALAYAKDKEVVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQMG
TVIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKSLLLNRDGTQCLSGSSDGTIRLWSLG
QQRCIATYRVHDEGVWALQVNEAFTHVYSGGRDRKIYCTDLRNPDIRVLICEEKAPVLKM
ELDRSADPPPALWVSTTKSSVNKWSLKGIHNFRASGEYDNDCSAPLTPLCTQPEQVIKGG
ASIIQCHILNDKRHILTKDTNNNVAYWDVLKACKGEDLGKIEFDEEIKQRFKMVYVPNWF
SVDLKTGMLTITLDESDCFAAWVSAKDAGFTSPDGSDPKLNLGGLLLQALLEYWPRTHIS
QVDEEENEVNHVNGEQEPRIQKGNGYFQVPPHTPVIFGEAGGRTLFRLLCRDSGGETESM
LLNETVPQWVIDITVDKNMPKFNKIPFYLQPHSSSGAKTLKKDRLSASDMLQVRKVMEHV
YEKIINLDNESQITSASNNEKPGEQEKEEDIAMLAEEKIELLCQDQVLDPNMDLRTVKHF
IWKSGGDLTLHYRQKSI
NT seq 2034 nt   +upstreamnt  +downstreamnt
atggcggctcatcacaggcagaatgcagctgggcgcaggaaagtccaggtgtcctatgta
atacgggatgaagtagagaaatacaatcgcaatggggtgaacgcactgcagctggacccc
acattgaaccggctgttcactgccggccgagactccatcatcagaatctggagtgtgaac
cagcacaagcaagacccctacatagcatcaatggagcatcacacagactgggtcaatgac
atcgtactttgttgtaatggaaaaactttaatatccgcttcctcagacaccactgtcaaa
gtctggaatgcacacaaaggattttgcatgtcaacactgcggacacacaaggactatgtg
aaagcgctggcatatgcaaaggataaagaggtggtggcatcagcagggctggacagacag
atattcctttgggatgtaaataccctcacagcactgactgcctcaaacaacacggtcacc
acttcctccctgagtgggaacaaggactccatctacagtcttgccatgaatcagatggga
acagtaatcgtttccgggtccacagagaaggttctgcgagtgtgggacccacggacctgt
gcaaagctaatgaagctgaaaggacacacagacaatgtaaagtctttgttattaaacaga
gatggaacacagtgcttatcaggcagctccgatgggacaatccgcctgtggtccctgggc
cagcagagatgtatagccacgtaccgagtccacgatgaaggggtctgggctctgcaagta
aacgaggctttcacccacgtttactcaggaggacgggacaggaagatctactgcacagac
ctgcgcaatccagacatcagggtgctcatctgcgaggaaaaggcaccggttctgaagatg
gaactggacagatctgcagacccccctccagctctctgggtgtccaccacaaagtcctcc
gtaaacaaatggtccctgaaaggtattcacaatttccgagcatctggtgaatatgacaat
gactgtagcgctcccctgacacccctgtgcacacaacctgaacaagtgatcaaaggggga
gctagtattattcagtgccacatcctgaatgataagagacacatacttaccaaggacacc
aacaacaatgtggcatattgggatgtacttaaggcctgcaagggagaagatctgggaaag
atagaatttgatgaagaaattaaacaacggttcaaaatggtatatgtgccaaactggttc
tcagtagacctgaaaactgggatgctgacgatcactttggatgagagcgactgttttgct
gcctgggtgtctgctaaggatgctgggtttaccagtccagatggttcagatcccaaatta
aacctgggtgggctgttgcttcaagctctgttggaatactggccaagaacacatatcagc
caagtggatgaagaagaaaatgaagtaaaccacgttaacggtgagcaggagccccgaata
cagaaaggaaatgggtatttccaggtgccgccccacacgccggtcatctttggtgaagca
ggggggaggactctgttcagattactgtgtcgagattcagggggtgaaacagaatccatg
cttctcaacgagactgttccgcaatgggttattgacatcactgtggataaaaacatgcct
aaattcaacaaaatccctttctacctccaacctcattcctcttcaggagcgaagacatta
aagaaggatcgactatcagctagcgacatgctgcaggtcaggaaggtgatggaacacgtg
tacgagaagattatcaacctggacaacgagtcccagataaccagcgcctccaataacgaa
aagcctggagagcaggagaaggaggaggacatcgccatgctggcagaggagaagattgag
ctgctgtgtcaggaccaggttttggatccgaacatggacttgagaacagtgaagcatttc
atctggaagagtggcggagacctgaccctccattaccgacagaaatctatatga

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