Polyodon spathula (Mississippi paddlefish): 121314092
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Entry
121314092 CDS
T07273
Name
(RefSeq) integrin beta-1-like isoform X1
KO
K05719
integrin beta 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03271
Virion - Rotavirus
pspa04145
Phagosome
pspa04510
Focal adhesion
pspa04512
ECM-receptor interaction
pspa04514
Cell adhesion molecules
pspa04530
Tight junction
pspa04810
Regulation of actin cytoskeleton
pspa04820
Cytoskeleton in muscle cells
pspa05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03271 Virion - Rotavirus
121314092
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121314092
04514 Cell adhesion molecules
121314092
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
121314092
09144 Cellular community - eukaryotes
04510 Focal adhesion
121314092
04530 Tight junction
121314092
09142 Cell motility
04820 Cytoskeleton in muscle cells
121314092
04810 Regulation of actin cytoskeleton
121314092
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
121314092
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121314092
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pspa04147
]
121314092
04515 Cell adhesion molecules [BR:
pspa04515
]
121314092
04090 CD molecules [BR:
pspa04090
]
121314092
Membrane trafficking [BR:
pspa04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
121314092
Exosome [BR:
pspa04147
]
Exosomal proteins
Proteins found in most exosomes
121314092
Cell adhesion molecules [BR:
pspa04515
]
Integrins
Integrin beta subunits
121314092
CD molecules [BR:
pspa04090
]
Proteins
121314092
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
Integrin_B_tail
Integrin_b_cyt
EGF_integrin
I-EGF_1
EGF_2
DUF6451
vWA_SIBA-E
Motif
Other DBs
NCBI-GeneID:
121314092
NCBI-ProteinID:
XP_041102892
LinkDB
All DBs
Position
4:6524668..6556744
Genome browser
AA seq
839 aa
AA seq
DB search
MNNIWKSKDISLATKCRLVSGIVFPIATYGCETWMLKKMDLKSLFICMLLGCLLCYSNAQ
QDGNDCIKANAKSCGECIQVGANCGWCTEPDFLKQGEPTSARCDVLESLKKRCKEIENPR
GDKKVVLNKAVTNRNHGTDERKPEDITQIQPQKMELTLRSGEPQTFELKFKRAEDYPIDL
YYLMDLSFSMKDDLENVKNLGTNLMREMQDITSDFRIGFGSFVEKTVMPYISTTPAKLLN
PCTGDQNCTSPFSYKNVLKLTNNGNQFNTLVGQQQISGNLDSPEGGFDAIMQVAVCGEHI
GWRNVTRLLVFSTDAGFHFAGDGKLGGIVLPNDGKCHLENGMYTMSHYYDYPSIAHLVQK
LSDNNIQTIFAVTEEFQPVYKELKNLIPKSAVGTLSSNSSNVIKLIIDAYNSLSSEVILE
NSKLPEGVTINYVSHCKNGLVNTGENGRKCSNISIGDEVMFNISITAHKCPKKGQEETVK
IKPLGFTEEVEIKLKFVCECECHDKGIPNSPKCNDGNGTFECGACRCNEGRIGRLCECST
EEVNSDDLDANCRRDNGTDICSTNGDCICGECVCKKRDNPSEIYSGKYCECDNFNCDRSN
NMICGGNGECVCRVCKCSPSYTGSACDCSLNTSTCLAKNGQICNGRGNCECGTCKCTDPK
FQGPTCEICPTCPGVCAEHKECVQCRTFNTGEKKDTCEADCSYFNLTKVNDRDKLPQPGQ
ATALTHCKERDASDCWFYFTYGVNNTENDIHVHVVDVLECPTGPDIIPIVAGVVAGIVLI
GLALLLIWKLLMIIHDRREFAKFEKEKMNAKWDTQENPIYKSPINKFKNPSYGRKAAAV
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacatctggaagagcaaagacatcagcctggcaaccaaatgcagattggtcagt
gggatagttttcccaatagcaacatatggctgcgaaacctggatgctgaaaaagatggat
ttaaaatccctttttatatgcatgctactgggatgtttgctgtgttacagtaatgctcaa
caagatggaaatgactgtattaaagccaatgcaaagtcatgtggggagtgtatacaagtt
ggtgcaaattgtggatggtgtactgaaccagattttttaaaacaaggggagccgacctct
gcaaggtgtgatgttcttgaatctctcaaaaaacgttgtaaagagattgaaaaccccaga
ggcgataaaaaagtggtcctgaacaaggcagtaacaaaccgcaatcatggcacagatgaa
cggaaaccagaagatatcacgcagattcagccccagaaaatggaattaaccctgcgatca
ggtgaaccccagacctttgaactgaaattcaagagagcggaagactaccccattgatctc
tattaccttatggatctctcattctccatgaaggatgatttggaaaatgtgaagaatctc
ggaactaatctgatgcgtgaaatgcaagacattacttctgattttagaattggtttcggc
tcctttgtggagaaaactgtgatgccctacatcagcaccaccccagccaagcttctgaac
ccttgcactggtgaccaaaactgtaccagccccttcagctacaaaaatgtcctcaagctc
accaacaatggaaaccagttcaatactcttgtaggacagcagcagatttctggaaacttg
gattctcctgaaggtggttttgatgccataatgcaggttgctgtctgtggtgagcatatt
ggctggcgaaatgtcacccgattgttggtgttctccactgatgcgggattccactttgct
ggagatgggaaactgggtggaatagttctgccaaatgatggaaagtgccatctggaaaat
ggcatgtacaccatgagtcattactacgactatccctctattgcccaccttgtacagaaa
ttaagtgacaacaacatccagaccatctttgctgtgacagaagaatttcagcctgtttac
aaggaactgaagaatctcattccgaagtctgctgtaggaactctctcttccaactccagc
aatgtaatcaagctgattatcgatgcttataattctctgtcttcagaagtaatccttgag
aacagcaagcttccagagggggtgactattaactatgtttcacattgcaagaatgggctc
gtcaacactggagaaaacggaagaaaatgttccaacatttccattggagatgaagtcatg
tttaatatcagtattactgcacacaaatgtccaaagaaaggccaggaagaaacagtcaag
atcaaaccactgggcttcacggaagaagttgaaatcaaacttaagtttgtctgcgagtgc
gagtgccacgacaagggaattccaaacagcccaaaatgcaacgatggcaacgggacattt
gagtgtggtgcctgcaggtgtaatgaaggccgtattggtaggctttgcgagtgcagcaca
gaagaagtgaacagtgatgacctggatgcgaactgtcgacgggacaatggcacagatatc
tgcagtaccaatggagactgtatctgtggagaatgtgtttgcaaaaagagggataacccc
agcgaaatctactccggcaaatactgcgagtgtgacaacttcaactgtgacaggtcaaac
aacatgatctgtggtggaaatggcgaatgtgtctgcagggtatgcaaatgctcccccagc
tataccggcagtgcctgtgactgctcgctgaacacatccacatgtttagcaaagaatgga
cagatctgcaacggcagaggaaattgtgaatgcggcacctgcaaatgcacagatccaaaa
ttccagggaccaacctgtgagatatgccccacgtgcccaggagtgtgtgccgagcataag
gagtgtgtacagtgcagaacctttaatacaggagagaagaaagacacctgtgaggcagac
tgctcgtatttcaacctcaccaaggtgaacgatcgggacaagctgccccagccgggccag
gccacagcactgactcactgtaaagagagggatgcgagcgactgctggttttacttcacc
tacggcgtcaacaacacagaaaatgacatccatgtgcatgttgttgacgtactagagtgt
cctactggaccggacattatcccgattgtggcaggtgtggtcgctggcatcgtgctgatc
ggtctcgctctcctgctcatctggaagctgctcatgatcatccacgacagaagggagttt
gctaagtttgaaaaggaaaagatgaatgctaaatgggacacgcaagagaatccaatttac
aagagtcctattaataagttcaagaatccaagctatggacgtaaagccgctgctgtctaa
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integrated database retrieval system
