Polyodon spathula (Mississippi paddlefish): 121314216
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Entry
121314216 CDS
T07273
Name
(RefSeq) chondroitin sulfate proteoglycan 4-like
KO
K08115
chondroitin sulfate proteoglycan 4
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pspa00535
]
121314216
04091 Lectins [BR:
pspa04091
]
121314216
Proteoglycans [BR:
pspa00535
]
Cell surface proteoglycans
Others
121314216
Lectins [BR:
pspa04091
]
C-Type lectins
Others
121314216
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Laminin_G_2
Laminin_G_1
Cadherin_4
TMEM154
DUF3377
Motif
Other DBs
NCBI-GeneID:
121314216
NCBI-ProteinID:
XP_041103180
LinkDB
All DBs
Position
1:complement(11916875..11945348)
Genome browser
AA seq
2392 aa
AA seq
DB search
MYFFTNFPTRLLSWQGLVAVFVLIRLALGASFYGDGYMELKTVETWSRSSLYVRFRTSRP
SGMLFLAAGHTDYCLVELHSTRLQVKLDLGSGERILRSEKGTPLNDLAWHTAELQHENNS
VTLTVDKHFQTSVKMPGQLLDLSIQEGLYVGGTGGLDKPYLVTEPSGFRGCIDELLFNQH
NLLSSLRSYYGFKHVYEVSLGCSPQFFASEDDPVSFFSSKAYISFPLWNVREGGVFECVV
HTSAEQGLLLYNSARQGDFVAMEIREGLIIAVVGKGGSKNELSSLSQVNDRKWHYVKLQF
TSRNLQLTVDEETVKTSLSSHSKGLSLMGPLFIGGIDDSTLAEVRNRGLVSVSGKRARGG
SFKGCLKDIKANSEKMGLKNAVVTKDISVGCEPEKEPDPTVQATPTTVPLPQVPYTSAAI
PTSAKPQDKKHGSFLALNNLVVPEGGRASLGSKHIKVSLEFKKLGIRQSQIIFKIQEQPV
HGQLRLDIDQDQEENTFSMLDLWHGRVMYIHGGSEDPLDFFMFSVIVSSKKEVPPYLKGN
KQYRFNISITPTNDAPELTLLEGNLFVLLENSKKPLTADVLKATDIDSNSTELVFSVLGN
LNADAGYLENTKNPGKAVNTFSHPDLEEGRIQYVHSGVRNSRIVLRVSDGDKVSNTVVLR
IMAIPLDYNIANNTGVEVTQGEVALISTNHLAVQTNAVKQELDIRYDIIEPPKYGEVQRW
HSSGEWKPTNTFSQRTLERERVRYVSTYQELQSSNAADNFKCKVSIGSLASEELVFPVTV
KWVQYKLLKNNALEIDKVKRVALNSEHLHAVVKGVTVAENNLYYRLLTLPKKGKLLLNHK
VLKKNSTFSQRNVTEQKVEYELVERPREDSQDMFTFQVISKHAHSGVYDFKLAIKADVNS
IILTNTGLSLTEGESKLITKEELFSETLITKEMFYKITSSPKYGKLKRINLSDSASSNDN
MTAFTNADILGERILYVHDDSETIHDEFTFIASLDKSGAEAAAVESSFNISIELKNDEKP
VRVVDKIFHVARNGQKLLTVEDLCYHDGDSDFDDGQLLYTRRGIPNGDLVLVNDTSHKLY
QFHQEDLELRRVLFLHRGTDYGRFVLFVTDGKHYTSSLLEVSAHEPYIQIANSTGLLVQK
GHAVSFSAANFSVATNMDVRDDKEVTYKLFLLPKHGGLYINDLLVDSFTQRDLRRGQLVY
QHDNSNNLVDRFNFTVKVKNVRLDAGVFVRVYLESHQRPPKVVRNSTLLVEEGKPVKISK
RKLEVVHEDSLPVEIVYTVKIAPAYGYIRSFAEGEEQYLGSEQAPIQSFTQQDINDGNIQ
YVQVTADQHKDSMELQVSNGVTEVGGIQVCIDVIPRLIPLTVSSITLKEGSAKALTEDII
QVTNQHFAGLDFEYSLWKHPQHGQIEHSRTPGVKLLVFTRKQVQQEFIYYVHDDSETTSD
NFTIIANDTELQKQSQPCTVYVNITPVNDEAPVITANTILKVWVSSVTEITQADLNSEDK
DSPPEELNYVITPPSNGHLALKSSANKSILNFTQAHVNNGEVVFVHSGAMSGGFSFQVSD
GLNFAPRQIFSVTARALLLRLDTNQHLQVFPGSLTPISSEDLQAVTNDDDGAGNRTITFT
LVSSPTLGRLVRVEPDNSTVEISTFTQAMVDEGVIAYEQTNLESIGWSAEDSFRFTVSSP
PASLDPHVFNIAISYENTGPEQRSLLLANTGAVVTEGEKVLIDKSMLDASNLLVKLPEAQ
RHSYEVWYEVTSLPQHGVITVGQRNLTKEKPNFSQFILNKYGITYQHDDSESLQDHFTFG
VWLNLKSKTASRPLDGSEVIEEVFNVTVTPVNDQPPELKTKSPGLRVVQGNKELLVPEHL
NVVDLDNPPEDIKYTIISKPNNGFLAMGSSINDSIMTFTQADINRGRVWFVQDGSTFSGV
FYFSVTDGKHRPLYKLFNLEVTEITIFLSNNTDVVLEQGQTSVVITNEQLAAETNGKNTT
IHYLVTTPPQFGKLLITTEPVTHFEQEDLLQGRLSYQMTNLTSSRDSFEFTVFTSESNLT
EQVLNITVKPLITLSQDTRVPNEIAFKLRSSMLNATQLSVLSGSDPHFEIVVPPTHSKIL
KSKKLKHGPSEPVLSFTLKDLEMGIVSLESKANMTAVQEMNDSFTFVLHAESTQPAIGVF
LYVIVPYDPSLVPVVTTKSPRLTTASVITNQTALGEPQLPFSVEPPVVTKEPTKPVTRWK
GRNRWGNPNRVAIPEPAVPDVASEKQERTPKTPVVEAAAHPSRASNPLLIILPLLACLLL
VVILVVLIIMFRHRKEKQKPLIQNHPNNTTAPSSPSPCQPERSLAVPSVTVTPLLKGREA
GADMGPRGIALETCGSPQETSLQLCTWNNLDPETLQHCRTSHPTLRNNQYWV
NT seq
7179 nt
NT seq
+upstream
nt +downstream
nt
atgtacttctttacaaactttccgacgaggttattgtcctggcaaggactggtggccgtg
ttcgtattgatcaggcttgcattaggagcctctttctatggtgacggctacatggagctt
aaaacggtggagacgtggtcccgctcgtccctgtatgtcaggttccgcacctccagaccc
agtggcatgctcttcctggcagcagggcacacagactactgcctggtggagctgcattcc
actcgcttacaggtgaagttggacttgggatctggtgagcgcatacttcgctcggagaaa
ggcaccccattgaatgatctggcctggcacacagcagaactgcagcatgaaaataatagc
gtgaccctgactgtggacaagcactttcaaacgagtgtcaaaatgccagggcagctgctt
gatctcagcatccaggagggtctgtacgtgggaggcaccggaggtctggacaaaccgtac
ctcgtcacggagcccagcggctttcgagggtgcatcgatgagctcctgtttaaccagcat
aatctgctgtcctcgctcagatcctattacgggttcaaacatgtctacgaggtgtccttg
ggctgcagccctcagttctttgccagtgaagacgacccggttagtttcttcagctccaaa
gcttatatttctttcccactttggaatgtgcgagagggaggagtgtttgagtgcgtggtc
cacacatcagctgagcaaggacttcttctgtacaactctgctcgtcaaggagactttgta
gccatggagatccgagaagggctgatcattgcggtcgtgggaaaaggtgggagtaaaaat
gagctttcatcccttagtcaggttaatgataggaaatggcattacgtcaaactacagttt
acatcaaggaaccttcagcttaccgtggatgaggagactgtgaaaacaagcctcagttcc
cacagcaagggtctcagtctgatgggtcccctctttatagggggtatagatgatagcact
ctagcagaagtccggaatcggggcttggtctcagtctcaggaaagcgtgccagaggaggg
tcctttaaaggctgcctgaaagacatcaaggccaactctgagaaaatgggcctaaagaat
gctgtggttactaaagacatttccgtggggtgtgaaccagaaaaggagccagaccctaca
gtgcaagccacccccactactgtccccctgcctcaagtcccgtacacatctgctgccatt
ccaacaagcgccaaacctcaggataagaagcatggcagcttcctggccctcaataacctt
gtggttccagaagggggccgtgcatctctcgggtccaagcacattaaagtcagcctggaa
ttcaagaagctgggtattcgtcagtcacagatcatttttaagatccaagagcagcctgtc
catgggcagctgaggttggatattgatcaggatcaagaagaaaacactttctccatgttg
gacctctggcatggtagggttatgtacattcacggtggttcagaggatccccttgacttt
tttatgttttctgtcattgtcagcagcaagaaagaagtcccaccctatctaaagggaaat
aagcaatacagatttaacatcagcataacccccaccaatgatgccccagagctgactctc
cttgaaggtaacctctttgtattgttggagaactcaaagaagcctctaacagctgatgtg
ttgaaagccactgacatcgacagcaattctacagagctggtgttttcagtgctgggtaac
ctgaatgcagatgctggctatcttgaaaacactaagaaccccggtaaagctgtcaatact
ttctcgcaccctgacttggaggaaggaagaatccagtatgttcatagtggggtgagaaac
tccaggattgtgttaagagtcagtgacggggataaagtgagcaacaccgtggtcctgcga
ataatggccataccgctggattataacattgcaaacaacacaggcgtggaagtgacgcaa
ggagaagtggccttgattagtaccaaccacctggcagtacagactaatgcagtaaaacag
gagctagatatccggtatgatatcattgagccccccaagtatggggaagtgcagaggtgg
cactccagcggagagtggaaacccaccaacacattctcccagcgcacacttgaacgtgaa
cgtgtgcgatatgtgagcacttaccaggaacttcagtctagcaatgctgctgacaatttc
aaatgtaaagtcagtatcggaagcctggccagtgaggaactggtctttccagttacagtg
aaatgggttcagtataaactactgaaaaacaatgcgctagaaattgacaaagtaaagaga
gtggcactaaattcagaacacctccatgctgttgttaaaggcgtgacagtagcggaaaac
aatctgtattacaggcttttgacgttacccaagaaaggcaaacttctgctcaaccacaaa
gtgttgaagaaaaactcaacttttagccaaagaaatgtcactgagcagaaagtagaatac
gagctggtggaaagaccacgtgaagactcacaggacatgtttaccttccaggttatctcc
aaacatgcacattcaggggtctatgatttcaaacttgccatcaaggcagatgtcaacagc
atcatcctaaccaatactgggctttctttaaccgagggagaaagcaaactgatcacaaaa
gaggaattgttttcagaaaccctgatcacaaaagaaatgttctacaaaatcacaagcagc
cccaaatatgggaagttaaagcgtataaacctttctgactctgcctccagcaatgacaac
atgacagcgttcaccaacgcggatatcctgggagaacgcattctgtacgtccacgatgac
tctgaaaccatccatgatgagtttactttcattgcatccctcgacaagtccggggcggag
gctgcagctgtggagagctcctttaacatttccattgagctgaagaatgacgaaaagcca
gtgcgtgttgttgataagatctttcatgtggccagaaatggtcagaaactgttaactgtg
gaagatctctgctatcatgatggggactctgattttgacgatggccagctgttgtacact
cgacggggaataccgaacggggacctggtccttgtgaatgacacctctcacaagctctac
cagttccatcaggaagacctggagctgaggcgtgtcttattcttgcaccgtgggacagat
tacgggcgtttcgtgttgttcgtgactgatggaaagcattatacatcatcactgctggaa
gtcagtgcacacgaaccctacatccaaatagccaacagtacagggctgctggtacaaaaa
ggacatgcagtgtctttcagtgcagccaacttcagtgtggccaccaacatggatgtaaga
gatgataaggaggtcacctacaaattgtttcttctaccaaagcatggcggactgtatata
aatgatcttctagtggattctttcacccagcgcgatttgagaaggggtcagctggtctat
caacatgacaacagtaacaacttggtggacagattcaactttactgtgaaggttaagaat
gttcgtctggatgctggagtttttgtccgagtgtatttggagagtcaccagcgcccccca
aaggtggtgcgcaacagcactcttctggtagaagaggggaagcctgtgaagatcagcaaa
agaaaacttgaggttgtgcatgaagatagcttgcctgtggaaatcgtttacactgttaag
atcgctcctgcctacggatacatccgcagctttgctgaaggggaggagcaatatttgggg
agtgaacaagcccctatccagagcttcacacagcaagacattaacgacggcaacatccag
tatgtgcaggtcactgcggatcagcacaaggacagcatggagctgcaggtctccaacgga
gtaactgaagttgggggaatccaggtctgcattgatgttatacctcgtctaatcccactg
acagtgtccagcatcacgctaaaggaaggatcggccaaggctctgacggaggacatcatt
caagttaccaaccagcacttcgctggcctggactttgagtactctctatggaagcatccg
cagcatgggcagatagagcactcccgaacccctggcgtgaagctccttgtgttcacgaga
aagcaggtacagcaggagttcatttattatgtgcatgatgacagcgagacgacatctgat
aattttaccatcattgccaatgacactgagctccagaaacagagccagccctgcactgtc
tatgtaaacattacgccagtgaatgatgaggcgccagttataactgccaacacaatatta
aaggtgtgggtgagctcagttactgagataacacaagcagacctgaactctgaagacaag
gactctcccccagaagagctgaactatgtcattaccccccccagcaacggccacctagct
ctcaagagctctgcaaacaagagcatcctgaacttcacacaggcacatgttaacaacggg
gaggtagtgtttgtacacagcggagccatgtctggtggatttagtttccaggtgagcgat
ggtttgaactttgcccctcgacagatcttcagtgtcacagccagagctctgctcctccgc
ttggacacaaaccagcatcttcaggtatttccagggtctctaactcccatttcatcagaa
gatttgcaagccgttacgaatgatgatgatggagcaggaaaccgcaccataaccttcacg
ctagtcagctctcccacactggggaggctggtcagagtcgagcctgacaactccactgtg
gaaatctccactttcacgcaagccatggtggatgagggtgtgattgcttatgaacagact
aacctggagtctataggatggagtgcagaggactcctttagattcactgtgtcctctccg
cctgcctctctggatcctcatgtatttaacatcgccatctcttatgaaaacactggtcct
gaacaacggagtcttctgcttgcaaacacaggtgccgtggttacagagggtgagaaagtg
ctgattgataaatccatgctggatgcttccaacctcctggtgaagctgcctgaagcacag
cgccactcttacgaagtctggtatgaagtcacttctttaccccagcatggtgtgatcact
gtcggacaacgcaacctcaccaaagagaagcccaacttctcccagttcattctcaacaag
tatggaattacctaccagcacgatgactctgagtctctgcaggaccactttaccttcggt
gtgtggttaaacctgaagagcaagactgcctccagacccctggatggaagtgaagtgatt
gaagaggtcttcaatgttaccgtcacaccagtcaacgaccagcctccagagctgaagacg
aagtctccaggcctaagggtcgtgcagggcaacaaagagttgcttgttccagagcatttg
aacgttgtggacttagataatcctccagaagatatcaaatacaccataatcagtaaaccc
aacaatggctttctagcgatgggcagcagcattaacgattccatcatgaccttcactcag
gctgacatcaaccgtggcagagtgtggtttgtccaggatggaagcacgttctcaggagtc
ttctacttcagtgtcacggatggcaagcacaggccgctgtacaaactgttcaatttggag
gtgacagagattaccattttcctttctaacaacacagacgtagtgctggagcagggtcaa
acttctgtggtcatcaccaatgagcaattagcagcagagaccaatggtaaaaacactaca
atccactatctggttacaacccctccacagtttggaaagcttctcatcactactgaacca
gtcacacattttgagcaagaagaccttttacaaggaagactatcctatcaaatgactaat
ctaacatcctcccgggatagctttgaattcactgtctttacttctgagagtaatctgact
gaacaggtccttaatattacagttaaacctttgataaccttaagccaagacacaagggtc
ccaaatgaaattgcatttaaattgaggagcagcatgctcaatgccacacagttatcggtc
ctgagtggtagcgatccacactttgaaatagtagtgcctccaacacacagcaaaatttta
aagtccaaaaagcttaaacatggaccttcagagcctgttctgtctttcactctcaaagac
cttgagatggggatcgtgtcacttgagtctaaagccaacatgacagcagtccaggaaatg
aatgattcgttcacctttgttcttcatgcagagagcactcaacctgcgatcggtgttttt
ctgtatgttattgtgccatatgatccgtcattggtgccagttgtcacaaccaaaagccct
cgattgactactgcatcagttataactaaccagaccgccttaggtgagccccaattacca
ttttcagtagagccccctgtggttactaaggaaccgaccaagcctgttaccagatggaaa
ggtaggaaccgctggggaaaccccaatagagttgctatccctgagccagcagtgccagat
gtagcctcggagaagcaggagagaacgcccaagacccctgttgtggaagctgcagctcat
cccagcagggcctccaaccccctgctcatcatactgcccctgctggcttgcctcctcctc
gtagttattctggtggtgttgattataatgttcagacacagaaaagagaagcagaagcct
ctaattcagaaccaccccaacaacaccactgccccaagcagcccgagcccgtgtcagcct
gagaggagcctggccgtcccgtcggtcactgtgacaccactgctgaaaggaagggaggcc
ggtgcagacatggggccacgaggaattgcattggagacctgtggcagcccacaagagacc
tccctgcagctctgtacttggaacaacctggacccagagactctgcagcactgccggacc
tcacacccaaccctgcgcaacaaccagtactgggtgtag
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integrated database retrieval system
